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Search of human proteins with 20336212
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20336212 guanidinoacetate N-methyltransferase isoform b
[Homo sapiens]
(269 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20336212 guanidinoacetate N-methyltransferase isoform b [Homo... 574 e-164
gi|4503909 guanidinoacetate N-methyltransferase isoform a [Homo ... 404 e-113
gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo s... 34 0.15
gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo ... 31 0.99
gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo ... 31 0.99
gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo ... 31 0.99
gi|148664226 plakophilin 2 isoform 2b [Homo sapiens] 31 1.3
gi|156627563 regulator of G-protein signaling 7 [Homo sapiens] 30 2.2
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens] 30 2.2
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens] 30 2.2
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens] 30 2.2
gi|169167080 PREDICTED: hypothetical protein [Homo sapiens] 29 3.8
gi|239753606 PREDICTED: hypothetical protein [Homo sapiens] 29 3.8
gi|113416229 PREDICTED: hypothetical protein [Homo sapiens] 29 3.8
gi|239748180 PREDICTED: hypothetical protein [Homo sapiens] 29 3.8
gi|239742074 PREDICTED: hypothetical protein XP_002342429 [Homo ... 29 3.8
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 28 6.4
gi|169204982 PREDICTED: hypothetical protein [Homo sapiens] 28 8.4
gi|169205503 PREDICTED: hypothetical protein [Homo sapiens] 28 8.4
gi|169204452 PREDICTED: hypothetical protein [Homo sapiens] 28 8.4
gi|116256455 zinc finger protein 429 [Homo sapiens] 28 8.4
gi|123701326 zinc finger protein 831 [Homo sapiens] 28 8.4
gi|8923009 non-SMC element 4 homolog A [Homo sapiens] 28 8.4
>gi|20336212 guanidinoacetate N-methyltransferase isoform b [Homo
sapiens]
Length = 269
Score = 574 bits (1480), Expect = e-164
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK 60
MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK
Sbjct: 1 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK 60
Query: 61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 120
GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV
Sbjct: 61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 120
Query: 121 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS 180
APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS
Sbjct: 121 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS 180
Query: 181 KYSDITIMFEVRPPEVPHGSPGSDLGWGWEGAAGATLLPGEGPFLTPWVGWTVLVHLEIK 240
KYSDITIMFEVRPPEVPHGSPGSDLGWGWEGAAGATLLPGEGPFLTPWVGWTVLVHLEIK
Sbjct: 181 KYSDITIMFEVRPPEVPHGSPGSDLGWGWEGAAGATLLPGEGPFLTPWVGWTVLVHLEIK 240
Query: 241 VLCLAQWLPGAVAQVYNPSTVEGRGGQIA 269
VLCLAQWLPGAVAQVYNPSTVEGRGGQIA
Sbjct: 241 VLCLAQWLPGAVAQVYNPSTVEGRGGQIA 269
>gi|4503909 guanidinoacetate N-methyltransferase isoform a [Homo
sapiens]
Length = 236
Score = 404 bits (1039), Expect = e-113
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK 60
MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK
Sbjct: 1 MSAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK 60
Query: 61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 120
GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV
Sbjct: 61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 120
Query: 121 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS 180
APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS
Sbjct: 121 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS 180
Query: 181 KYSDITIMFE 190
KYSDITIMFE
Sbjct: 181 KYSDITIMFE 190
>gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo
sapiens]
Length = 291
Score = 33.9 bits (76), Expect = 0.15
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 248 LPGAVAQVYNPSTVEGRGGQI 268
LPGAVA NPST+ GRGG+I
Sbjct: 264 LPGAVAHACNPSTLGGRGGRI 284
>gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo
sapiens]
Length = 120
Score = 31.2 bits (69), Expect = 0.99
Identities = 15/22 (68%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 247 WLPGAVAQVYNPSTVEGRGGQI 268
WL G VA YNPST+ GRGG I
Sbjct: 81 WL-GPVAHTYNPSTLGGRGGWI 101
>gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo
sapiens]
Length = 120
Score = 31.2 bits (69), Expect = 0.99
Identities = 15/22 (68%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 247 WLPGAVAQVYNPSTVEGRGGQI 268
WL G VA YNPST+ GRGG I
Sbjct: 81 WL-GPVAHTYNPSTLGGRGGWI 101
>gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo
sapiens]
Length = 120
Score = 31.2 bits (69), Expect = 0.99
Identities = 15/22 (68%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 247 WLPGAVAQVYNPSTVEGRGGQI 268
WL G VA YNPST+ GRGG I
Sbjct: 81 WL-GPVAHTYNPSTLGGRGGWI 101
>gi|148664226 plakophilin 2 isoform 2b [Homo sapiens]
Length = 881
Score = 30.8 bits (68), Expect = 1.3
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 249 PGAVAQVYNPSTVEGRGGQI 268
PGAVA NPST+ G+GG+I
Sbjct: 472 PGAVAHACNPSTLGGQGGRI 491
>gi|156627563 regulator of G-protein signaling 7 [Homo sapiens]
Length = 487
Score = 30.0 bits (66), Expect = 2.2
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 15/140 (10%)
Query: 53 LAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVF--QRLRDWAPRQTHKV 110
L A+ RV GFGM + + P+ ++ + F + LR W + K
Sbjct: 316 LEASKEPSQQRVKRWGFGM----DEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKK 371
Query: 111 IPLKG-------LWED-VAPTLPDG-HFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLK 161
P+K +W++ +AP P + D YD + + + F + H ++L+K
Sbjct: 372 RPIKEVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMK 431
Query: 162 PGGVLTYCNLTSWGELMKSK 181
+ +++ EL+++K
Sbjct: 432 SDSYPRFIRSSAYQELLQAK 451
>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 211 GAAGATLLPGEGPFLTPWVGWTVLVHLEIKVLCLAQWLPGAVAQVYNPSTVEGRGGQ 267
G+ +TLLPG L P G TVL LE KV A+ + + E GGQ
Sbjct: 1042 GSIFSTLLPGANAMLAPPEGQTVLDGLEFKV---------ALGNTWKENLTELSGGQ 1089
>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 211 GAAGATLLPGEGPFLTPWVGWTVLVHLEIKVLCLAQWLPGAVAQVYNPSTVEGRGGQ 267
G+ +TLLPG L P G TVL LE KV A+ + + E GGQ
Sbjct: 1042 GSIFSTLLPGANAMLAPPEGQTVLDGLEFKV---------ALGNTWKENLTELSGGQ 1089
>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 211 GAAGATLLPGEGPFLTPWVGWTVLVHLEIKVLCLAQWLPGAVAQVYNPSTVEGRGGQ 267
G+ +TLLPG L P G TVL LE KV A+ + + E GGQ
Sbjct: 1042 GSIFSTLLPGANAMLAPPEGQTVLDGLEFKV---------ALGNTWKENLTELSGGQ 1089
>gi|169167080 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 29.3 bits (64), Expect = 3.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 193 PPEVPHGSPGSDLGWGWEGAAGATLLPGEG 222
P P GS G+ + W GAA A PG G
Sbjct: 88 PRPAPRGSTGAQVWWAGPGAAAAPPHPGSG 117
>gi|239753606 PREDICTED: hypothetical protein [Homo sapiens]
Length = 177
Score = 29.3 bits (64), Expect = 3.8
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 192 RPPEVPHGSPGSDLGWGWEGAAGATLLPGEG 222
+PP PHG G GWG A L PG G
Sbjct: 44 QPPPGPHGGAGEGQGWG----GAAVLGPGPG 70
>gi|113416229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 29.3 bits (64), Expect = 3.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 193 PPEVPHGSPGSDLGWGWEGAAGATLLPGEG 222
P P GS G+ + W GAA A PG G
Sbjct: 88 PRPAPRGSTGAQVWWAGPGAAAAPPHPGSG 117
>gi|239748180 PREDICTED: hypothetical protein [Homo sapiens]
Length = 177
Score = 29.3 bits (64), Expect = 3.8
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 192 RPPEVPHGSPGSDLGWGWEGAAGATLLPGEG 222
+PP PHG G GWG A L PG G
Sbjct: 44 QPPPGPHGGAGEGQGWG----GAAVLGPGPG 70
>gi|239742074 PREDICTED: hypothetical protein XP_002342429 [Homo
sapiens]
Length = 177
Score = 29.3 bits (64), Expect = 3.8
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 192 RPPEVPHGSPGSDLGWGWEGAAGATLLPGEG 222
+PP PHG G GWG A L PG G
Sbjct: 44 QPPPGPHGGAGEGQGWG----GAAVLGPGPG 70
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 28.5 bits (62), Expect = 6.4
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 250 GAVAQVYNPSTVEGRGGQI 268
GAVA NPST+ GRGG I
Sbjct: 346 GAVAHACNPSTLGGRGGWI 364
>gi|169204982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 28.1 bits (61), Expect = 8.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 249 PGAVAQVYNPSTVEGRGGQI 268
P V NPST+ GRGGQI
Sbjct: 79 PSVVPHTCNPSTLGGRGGQI 98
>gi|169205503 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 28.1 bits (61), Expect = 8.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 249 PGAVAQVYNPSTVEGRGGQI 268
P V NPST+ GRGGQI
Sbjct: 79 PSVVPHTCNPSTLGGRGGQI 98
>gi|169204452 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 28.1 bits (61), Expect = 8.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 249 PGAVAQVYNPSTVEGRGGQI 268
P V NPST+ GRGGQI
Sbjct: 79 PSVVPHTCNPSTLGGRGGQI 98
>gi|116256455 zinc finger protein 429 [Homo sapiens]
Length = 674
Score = 28.1 bits (61), Expect = 8.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 250 GAVAQVYNPSTVEGRGGQI 268
G VA NPST+ GRGG+I
Sbjct: 646 GVVAHACNPSTLGGRGGRI 664
>gi|123701326 zinc finger protein 831 [Homo sapiens]
Length = 1677
Score = 28.1 bits (61), Expect = 8.4
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 157 FRLLKPGGVLTYCNLTSWGEL-MKSKYSDITIMFEVRPP------EVPHGSPGSDLGWGW 209
F LK LT+C L+ L + K ++ V P E P+G PGS+ GW W
Sbjct: 1174 FPSLKAEPRLTWCCLSRSVPLPAEQKAKAASVYLAVHFPGSSLRDEGPNGPPGSNGGWTW 1233
Query: 210 EGAAGATLLPGEG 222
PGEG
Sbjct: 1234 TS-------PGEG 1239
>gi|8923009 non-SMC element 4 homolog A [Homo sapiens]
Length = 385
Score = 28.1 bits (61), Expect = 8.4
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 57 ASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECND-------------GVFQRLRDWA 103
A K VLE + S+ +EA +D H+++ +D F LR
Sbjct: 106 AGDKLTEVLEEANTLFNEVSRAREAVLDAHFLVLASDLGIEKAKQLRSDLSSFDMLRYVE 165
Query: 104 PRQTHK-VIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLL 160
TH V PL+ E++ F+ I+YD++ + T T + F K H F L
Sbjct: 166 TLLTHMGVNPLEA--EELIRDEDSPDFEFIVYDSWKI---TGRTAENTFNKTHTFHFL 218
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,525,861
Number of Sequences: 37866
Number of extensions: 610529
Number of successful extensions: 1808
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1790
Number of HSP's gapped (non-prelim): 24
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.