Search of human proteins with 20070130

Search of human proteins with 20070130

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|20070130 basic transcription factor 3 isoform B [Homo
sapiens]
         (162 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|20070130 basic transcription factor 3 isoform B [Homo sapiens]     316   6e-87
gi|83641885 basic transcription factor 3 isoform A [Homo sapiens]     316   6e-87
gi|56847620 basic transcription factor 3-like 4 isoform 1 [Homo ...   249   7e-67
gi|211057406 basic transcription factor 3-like 4 isoform 2 [Homo...   146   9e-36
gi|163965362 nascent polypeptide-associated complex alpha subuni...    39   0.002
gi|163965366 nascent polypeptide-associated complex alpha subuni...    39   0.002
gi|5031931 nascent polypeptide-associated complex alpha subunit ...    39   0.002
gi|163965364 nascent polypeptide-associated complex alpha subuni...    39   0.002
gi|226437579 NAC alpha domain containing [Homo sapiens]                38   0.004
gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]     38   0.004
gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]     38   0.004
gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]     38   0.004
gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]     38   0.004
gi|148747351 protein kinase C and casein kinase substrate in neu...    30   1.2  
gi|207113124 dynein, cytoplasmic 1, intermediate chain 1 isoform...    29   1.6  
gi|187937176 NACHT, leucine rich repeat and PYD containing 7 iso...    29   2.0  
gi|75709196 NACHT, leucine rich repeat and PYD containing 7 isof...    29   2.0  
gi|46049100 NACHT, leucine rich repeat and PYD containing 7 isof...    29   2.0  
gi|207028748 N-myc downstream regulated 1 [Homo sapiens]               28   2.6  
gi|37655183 N-myc downstream regulated 1 [Homo sapiens]                28   2.6  
gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens]       28   2.6  
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]                   28   2.6  
gi|169160859 PREDICTED: similar to actin, gamma 1 [Homo sapiens]       28   3.5  
gi|5729850 guanine nucleotide binding protein (G protein), alpha...    28   3.5  
gi|118722347 over-expressed breast tumor protein [Homo sapiens]        28   3.5  
gi|22749049 Leber congenital amaurosis 5-like [Homo sapiens]           28   4.5  
gi|75677325 kinase suppressor of ras [Homo sapiens]                    27   5.9  
gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]             27   5.9  
gi|8924258 gamma-aminobutyric acid (GABA) receptor, theta precur...    27   7.7  
gi|87298937 centrosomal protein 110kDa [Homo sapiens]                  27   7.7  

>gi|20070130 basic transcription factor 3 isoform B [Homo sapiens]
          Length = 162

 Score =  316 bits (809), Expect = 6e-87
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIE 60
           MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIE
Sbjct: 1   MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIE 60

Query: 61  EVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRR 120
           EVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRR
Sbjct: 61  EVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRR 120

Query: 121 LAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN 162
           LAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN
Sbjct: 121 LAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN 162


>gi|83641885 basic transcription factor 3 isoform A [Homo sapiens]
          Length = 206

 Score =  316 bits (809), Expect = 6e-87
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIE 60
           MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIE
Sbjct: 45  MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIE 104

Query: 61  EVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRR 120
           EVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRR
Sbjct: 105 EVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRR 164

Query: 121 LAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN 162
           LAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN
Sbjct: 165 LAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN 206


>gi|56847620 basic transcription factor 3-like 4 isoform 1 [Homo
           sapiens]
          Length = 158

 Score =  249 bits (636), Expect = 7e-67
 Identities = 128/158 (81%), Positives = 140/158 (88%), Gaps = 1/158 (0%)

Query: 6   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMF 65
           MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQ SLKKL VNNI+GIEEVNM 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 66  TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL 125
            + GTVIHFNNPKVQASL+ANTF ITGHAE K +TEMLP IL+QLGADSLTSLR+LAE  
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 126 PKQSVDGKAPLATG-EDDDDEVPDLVENFDEASKNEAN 162
           P+Q +D KAP     +++DD+VPDLVENFDEASKNEAN
Sbjct: 121 PRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN 158


>gi|211057406 basic transcription factor 3-like 4 isoform 2 [Homo
           sapiens]
          Length = 100

 Score =  146 bits (368), Expect = 9e-36
 Identities = 73/100 (73%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 64  MFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAE 123
           M  + GTVIHFNNPKVQASL+ANTF ITGHAE K +TEMLP IL+QLGADSLTSLR+LAE
Sbjct: 1   MIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAE 60

Query: 124 ALPKQSVDGKAPLATG-EDDDDEVPDLVENFDEASKNEAN 162
             P+Q +D KAP     +++DD+VPDLVENFDEASKNEAN
Sbjct: 61  QFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN 100


>gi|163965362 nascent polypeptide-associated complex alpha subunit
           isoform b [Homo sapiens]
          Length = 215

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 29/137 (21%), Positives = 64/137 (46%), Gaps = 14/137 (10%)

Query: 12  AKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTV 71
           A+L A   I  +  ++ K+       +  +KK + ++ KLG+  ++G+  V +  ++  +
Sbjct: 51  AQLAAAAEIDEEPVSKAKQ-------SRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNIL 103

Query: 72  IHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVD 131
                P V  S A++T+ + G A+ + L++       QL A     ++   EA+     +
Sbjct: 104 FVITKPDVYKSPASDTYIVFGEAKIEDLSQQA-----QLAAAEKFKVQ--GEAVSNIQEN 156

Query: 132 GKAPLATGEDDDDEVPD 148
            + P    E +++EV +
Sbjct: 157 TQTPTVQEESEEEEVDE 173


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 29/137 (21%), Positives = 64/137 (46%), Gaps = 14/137 (10%)

Query: 12   AKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTV 71
            A+L A   I  +  ++ K+       +  +KK + ++ KLG+  ++G+  V +  ++  +
Sbjct: 1914 AQLAAAAEIDEEPVSKAKQ-------SRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNIL 1966

Query: 72   IHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVD 131
                 P V  S A++T+ + G A+ + L++       QL A     ++   EA+     +
Sbjct: 1967 FVITKPDVYKSPASDTYIVFGEAKIEDLSQQA-----QLAAAEKFKVQ--GEAVSNIQEN 2019

Query: 132  GKAPLATGEDDDDEVPD 148
             + P    E +++EV +
Sbjct: 2020 TQTPTVQEESEEEEVDE 2036


>gi|5031931 nascent polypeptide-associated complex alpha subunit
           isoform b [Homo sapiens]
          Length = 215

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 29/137 (21%), Positives = 64/137 (46%), Gaps = 14/137 (10%)

Query: 12  AKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTV 71
           A+L A   I  +  ++ K+       +  +KK + ++ KLG+  ++G+  V +  ++  +
Sbjct: 51  AQLAAAAEIDEEPVSKAKQ-------SRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNIL 103

Query: 72  IHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVD 131
                P V  S A++T+ + G A+ + L++       QL A     ++   EA+     +
Sbjct: 104 FVITKPDVYKSPASDTYIVFGEAKIEDLSQQA-----QLAAAEKFKVQ--GEAVSNIQEN 156

Query: 132 GKAPLATGEDDDDEVPD 148
            + P    E +++EV +
Sbjct: 157 TQTPTVQEESEEEEVDE 173


>gi|163965364 nascent polypeptide-associated complex alpha subunit
           isoform b [Homo sapiens]
          Length = 215

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 29/137 (21%), Positives = 64/137 (46%), Gaps = 14/137 (10%)

Query: 12  AKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTV 71
           A+L A   I  +  ++ K+       +  +KK + ++ KLG+  ++G+  V +  ++  +
Sbjct: 51  AQLAAAAEIDEEPVSKAKQ-------SRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNIL 103

Query: 72  IHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVD 131
                P V  S A++T+ + G A+ + L++       QL A     ++   EA+     +
Sbjct: 104 FVITKPDVYKSPASDTYIVFGEAKIEDLSQQA-----QLAAAEKFKVQ--GEAVSNIQEN 156

Query: 132 GKAPLATGEDDDDEVPD 148
            + P    E +++EV +
Sbjct: 157 TQTPTVQEESEEEEVDE 173


>gi|226437579 NAC alpha domain containing [Homo sapiens]
          Length = 1562

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 27/136 (19%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 16   AQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFN 75
            AQ   GG      K K      +  +KK + ++ KLG+  I G+  + +  ++  +    
Sbjct: 1394 AQAPAGGSEETIAKAK-----QSRSEKKARKAMSKLGLRQIQGVTRITIQKSKNILFVIA 1448

Query: 76   NPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAP 135
             P V  S A++T+ + G A+ + L++     +++  A+        +  +P+ +   +  
Sbjct: 1449 KPDVFKSPASDTYVVFGEAKIEDLSQQ----VHKAAAEKFKVPSEPSALVPESAPRPRVR 1504

Query: 136  LATGEDDDDEVPDLVE 151
            L   E++++E  ++ E
Sbjct: 1505 LECKEEEEEEEEEVDE 1520


>gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1522

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 27/136 (19%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 16   AQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFN 75
            AQ   GG      K K      +  +KK + ++ KLG+  I G+  + +  ++  +    
Sbjct: 1354 AQAPAGGSEETIAKAK-----QSRSEKKARKAMSKLGLRQIQGVTRITIQKSKNILFVIA 1408

Query: 76   NPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAP 135
             P V  S A++T+ + G A+ + L++     +++  A+        +  +P+ +   +  
Sbjct: 1409 KPDVFKSPASDTYVVFGEAKIEDLSQQ----VHKAAAEKFKVPSEPSALVPESAPRPRVR 1464

Query: 136  LATGEDDDDEVPDLVE 151
            L   E++++E  ++ E
Sbjct: 1465 LECKEEEEEEEEEVDE 1480


>gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1522

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 27/136 (19%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 16   AQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFN 75
            AQ   GG      K K      +  +KK + ++ KLG+  I G+  + +  ++  +    
Sbjct: 1354 AQAPAGGSEETIAKAK-----QSRSEKKARKAMSKLGLRQIQGVTRITIQKSKNILFVIA 1408

Query: 76   NPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAP 135
             P V  S A++T+ + G A+ + L++     +++  A+        +  +P+ +   +  
Sbjct: 1409 KPDVFKSPASDTYVVFGEAKIEDLSQQ----VHKAAAEKFKVPSEPSALVPESAPRPRVR 1464

Query: 136  LATGEDDDDEVPDLVE 151
            L   E++++E  ++ E
Sbjct: 1465 LECKEEEEEEEEEVDE 1480


>gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1562

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 27/136 (19%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 16   AQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFN 75
            AQ   GG      K K      +  +KK + ++ KLG+  I G+  + +  ++  +    
Sbjct: 1394 AQAPAGGSEETIAKAK-----QSRSEKKARKAMSKLGLRQIQGVTRITIQKSKNILFVIA 1448

Query: 76   NPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAP 135
             P V  S A++T+ + G A+ + L++     +++  A+        +  +P+ +   +  
Sbjct: 1449 KPDVFKSPASDTYVVFGEAKIEDLSQQ----VHKAAAEKFKVPSEPSALVPESAPRPRVR 1504

Query: 136  LATGEDDDDEVPDLVE 151
            L   E++++E  ++ E
Sbjct: 1505 LECKEEEEEEEEEVDE 1520


>gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1522

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 27/136 (19%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 16   AQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFN 75
            AQ   GG      K K      +  +KK + ++ KLG+  I G+  + +  ++  +    
Sbjct: 1354 AQAPAGGSEETIAKAK-----QSRSEKKARKAMSKLGLRQIQGVTRITIQKSKNILFVIA 1408

Query: 76   NPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAP 135
             P V  S A++T+ + G A+ + L++     +++  A+        +  +P+ +   +  
Sbjct: 1409 KPDVFKSPASDTYVVFGEAKIEDLSQQ----VHKAAAEKFKVPSEPSALVPESAPRPRVR 1464

Query: 136  LATGEDDDDEVPDLVE 151
            L   E++++E  ++ E
Sbjct: 1465 LECKEEEEEEEEEVDE 1480


>gi|148747351 protein kinase C and casein kinase substrate in
           neurons 2 [Homo sapiens]
          Length = 486

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 28/186 (15%)

Query: 2   KETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSL-------KKLGVN 54
           ++ +  +EK  K   ++  G        ++V  +    ++K+L+F         K L ++
Sbjct: 199 QDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLS 258

Query: 55  NISG-----------------IEEVNMF-TNQGTVIHFNNPKVQASLAANTFTITGHAET 96
           N++G                 +E++  F  N G  +  N P+ +   A    T++   + 
Sbjct: 259 NVAGYKAIYHDLEQSIRAADAVEDLRWFRANHGPGMAMNWPQFEEWSADLNRTLSRREKK 318

Query: 97  KQLTEMLPSILNQLGADSLTSLRRLAEALPK---QSVDGKAPLATGEDDDDEVPDLVENF 153
           K    +  + +NQ G  SL S       +P    QS   ++     ED+DD    + E  
Sbjct: 319 KATDGVTLTGINQTGDQSLPSKPSSTLNVPSNPAQSAQSQSSYNPFEDEDDTGSTVSEKD 378

Query: 154 DEASKN 159
           D  +KN
Sbjct: 379 DTKAKN 384


>gi|207113124 dynein, cytoplasmic 1, intermediate chain 1 isoform c
           [Homo sapiens]
          Length = 608

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 17/69 (24%), Positives = 34/69 (49%)

Query: 77  PKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPL 136
           P   +S + +T +  G  ++  L  +    L++LG   +T +  L   +   S + + PL
Sbjct: 78  PMSPSSKSVSTPSEAGSQDSGDLGPLTRRRLHKLGVSKVTQVDFLPREVVSYSKETQTPL 137

Query: 137 ATGEDDDDE 145
           AT + ++DE
Sbjct: 138 ATHQSEEDE 146


>gi|187937176 NACHT, leucine rich repeat and PYD containing 7
           isoform 3 [Homo sapiens]
          Length = 1037

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 98  QLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDD 143
           QL   L ++L QL  D L S + L  A P + V  K P +  E+ D
Sbjct: 5   QLEWTLQTLLEQLNEDELKSFKSLLWAFPLEDVLQKTPWSEVEEAD 50


>gi|75709196 NACHT, leucine rich repeat and PYD containing 7 isoform
           2 [Homo sapiens]
          Length = 980

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 98  QLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDD 143
           QL   L ++L QL  D L S + L  A P + V  K P +  E+ D
Sbjct: 5   QLEWTLQTLLEQLNEDELKSFKSLLWAFPLEDVLQKTPWSEVEEAD 50


>gi|46049100 NACHT, leucine rich repeat and PYD containing 7 isoform
           1 [Homo sapiens]
          Length = 1009

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 98  QLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDD 143
           QL   L ++L QL  D L S + L  A P + V  K P +  E+ D
Sbjct: 5   QLEWTLQTLLEQLNEDELKSFKSLLWAFPLEDVLQKTPWSEVEEAD 50


>gi|207028748 N-myc downstream regulated 1 [Homo sapiens]
          Length = 394

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 1   MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIE 60
           ++E  + ++ +  L   V +   GT +  + V+    T  D  +     K   N +   E
Sbjct: 27  LQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVI---LTYHDIGMNH---KTCYNPLFNYE 80

Query: 61  EVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSL 118
           ++   T    V H + P  Q   A+       +    QL EMLP +L Q G  S+  +
Sbjct: 81  DMQEITQHFAVCHVDAPGQQDGAASFPAGYM-YPSMDQLAEMLPGVLQQFGLKSIIGM 137


>gi|37655183 N-myc downstream regulated 1 [Homo sapiens]
          Length = 394

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 1   MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIE 60
           ++E  + ++ +  L   V +   GT +  + V+    T  D  +     K   N +   E
Sbjct: 27  LQEFDVQEQDIETLHGSVHVTLCGTPKGNRPVI---LTYHDIGMNH---KTCYNPLFNYE 80

Query: 61  EVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSL 118
           ++   T    V H + P  Q   A+       +    QL EMLP +L Q G  S+  +
Sbjct: 81  DMQEITQHFAVCHVDAPGQQDGAASFPAGYM-YPSMDQLAEMLPGVLQQFGLKSIIGM 137


>gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens]
          Length = 1208

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 51  LGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQL 110
           + + +I+G + + +   Q      + P ++ ++   +      AE  +    +PS     
Sbjct: 588 IALQSITGSQRIEIEELQNEEEELSPPLMEYNINVKSHPEIQFAEINKDGTSIPS----- 642

Query: 111 GADSLTSLRRLAEALPKQSVDGKAPLATGEDD-DDEVPDLVENFDEASKNEAN 162
              S  SL+ L E   KQ    K      +D  +D+VP +VE  ++  K +AN
Sbjct: 643 -ESSTESLKDLQEVKSKQRKKKKTKNKKNKDSKEDQVPYVVEKEEQLRKEQAN 694


>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
          Length = 1417

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 16/138 (11%)

Query: 2    KETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFS-------------- 47
            K+   + EKL K++ +          +++KV+  T TA   K++                
Sbjct: 948  KQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIM 1007

Query: 48   -LKKLGVNNISGIEEVNMFTNQ-GTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPS 105
             LK+ G N    + +++M  +Q  T +      V+        T T   E  Q  E+L +
Sbjct: 1008 HLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQHSTETELTEALQKREVLET 1067

Query: 106  ILNQLGADSLTSLRRLAE 123
             L     +  ++LR+L E
Sbjct: 1068 ELQNAHGELKSTLRQLQE 1085


>gi|169160859 PREDICTED: similar to actin, gamma 1 [Homo sapiens]
          Length = 152

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 32 VVHRTATADDKKLQFSLK 49
          +V RTATADDKKL+ S K
Sbjct: 1  MVQRTATADDKKLEKSYK 18


>gi|5729850 guanine nucleotide binding protein (G protein), alpha
           inhibiting activity polypeptide 3 [Homo sapiens]
          Length = 354

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 9   EKLAKLQAQVRIG----GKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNM 64
           EK AK    + +G    GK T  ++ K++H    ++D+  Q+ +     N I  I  + +
Sbjct: 28  EKAAKEVKLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYS-NTIQSI--IAI 84

Query: 65  FTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGAD 113
               G +        +A  A   F + G AE   +T  L  ++ +L  D
Sbjct: 85  IRAMGRLKIDFGEAARADDARQLFVLAGSAEEGVMTPELAGVIKRLWRD 133


>gi|118722347 over-expressed breast tumor protein [Homo sapiens]
          Length = 384

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 93  HAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEV 146
           HA+   +  +    L+   A + T L+ L + LP Q +D +  LA GE++  E+
Sbjct: 42  HAQGPAVLSLGSLCLDTNQAPNWTGLQTLLQQLPPQDIDERYCLALGEEERAEL 95


>gi|22749049 Leber congenital amaurosis 5-like [Homo sapiens]
          Length = 670

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 13/113 (11%)

Query: 9   EKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQ 68
           + L KL     +  +     K  ++     A+DKK+Q   K+L +N          F+ Q
Sbjct: 243 QALQKLSEDKNLAEREELTHKLSIITTKMDANDKKIQSLEKQLRLN-------CRAFSRQ 295

Query: 69  GTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRL 121
             +      + + +LAA T T T   E K L + L     +L   ++ S R L
Sbjct: 296 LAI------ETRKTLAAQTATKTLQVEVKHLQQKLKEKDRELEIKNIYSHRIL 342


>gi|75677325 kinase suppressor of ras [Homo sapiens]
          Length = 762

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 79  VQASLAANTFTITGHAETKQLTEMLPS--ILNQLGADSLTSLRRLAEALPKQSVDGKAPL 136
           +  SL  N F I+  A    L E      + +Q  AD L       EA   ++ + +A  
Sbjct: 379 IAESLKENAFNISAFAHAAPLPEAADGTRLDDQPKADVL-------EAHEAEAEEPEAGK 431

Query: 137 ATGEDDDDEVPDL 149
           +  EDD+DEV DL
Sbjct: 432 SEAEDDEDEVDDL 444


>gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]
          Length = 4116

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 8    QEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTN 67
            Q +L  LQ Q+ +  + TA+   K+   T  AD KKL     +   N  + I +      
Sbjct: 2697 QRELTALQPQLILTSEETAKMMVKIEAETREADGKKLLVQADEKEANVAAAIAQGIKNEC 2756

Query: 68   QGTVIHFNNPKVQASLAA 85
            +G +     P ++A+LAA
Sbjct: 2757 EGDLAE-AMPALEAALAA 2773


>gi|8924258 gamma-aminobutyric acid (GABA) receptor, theta precursor
           [Homo sapiens]
          Length = 632

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 104 PSILNQLGADSLTSLRRLAEAL-PKQSVDGKAPLATGEDDDD 144
           P  L  L + S  +    +E+L P  S+ G+APLATGE   D
Sbjct: 411 PESLGSLTSTSEQAQLATSESLSPLTSLSGQAPLATGESLSD 452


>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
          Length = 2325

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 14/55 (25%), Positives = 32/55 (58%)

Query: 98   QLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVEN 152
            ++++ + ++ +++  +  TSL+ L + LP+   D +A L   E+ + E+  L EN
Sbjct: 2152 EISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKEN 2206


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.126    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,027,001
Number of Sequences: 37866
Number of extensions: 186468
Number of successful extensions: 632
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 30
length of query: 162
length of database: 18,247,518
effective HSP length: 94
effective length of query: 68
effective length of database: 14,688,114
effective search space: 998791752
effective search space used: 998791752
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.