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Search of human proteins with 19923082
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923082 expressed in prostate and testis [Homo sapiens]
(126 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923082 expressed in prostate and testis [Homo sapiens] 271 1e-73
gi|222136622 prostate and testis expressed 3 [Homo sapiens] 53 5e-08
gi|190886439 hypothetical protein LOC138240 [Homo sapiens] 42 2e-04
gi|9955935 acrosomal vesicle protein 1 isoform j precursor [Homo... 41 3e-04
gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo... 40 4e-04
gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo... 40 4e-04
gi|4501879 acrosomal vesicle protein 1 isoform a precursor [Homo... 40 4e-04
gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo... 40 4e-04
gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo... 40 4e-04
gi|9955927 acrosomal vesicle protein 1 isoform b precursor [Homo... 40 4e-04
gi|221554530 prostate and testis expressed 4 [Homo sapiens] 37 0.003
gi|50845399 lymphocyte antigen 6 complex G5B [Homo sapiens] 36 0.007
gi|219881540 hypothetical protein LOC199870 isoform 4 [Homo sapi... 27 5.4
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 27 5.4
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 27 5.4
gi|221139693 hypothetical protein LOC199870 isoform 5 [Homo sapi... 27 5.4
gi|22749341 hypothetical protein LOC199870 isoform 3 [Homo sapiens] 27 5.4
gi|45593147 EGF-like-domain, multiple 9 [Homo sapiens] 26 7.0
gi|45545431 EGF-like-domain, multiple 9 [Homo sapiens] 26 7.0
gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens] 26 7.0
gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens] 26 9.2
>gi|19923082 expressed in prostate and testis [Homo sapiens]
Length = 126
Score = 271 bits (692), Expect = 1e-73
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MDKSLLLELPILLCCFRALSGSLSMRNDAVNEIVAVKNNFPVIEIVQCRMCHLQFPGEKC 60
MDKSLLLELPILLCCFRALSGSLSMRNDAVNEIVAVKNNFPVIEIVQCRMCHLQFPGEKC
Sbjct: 1 MDKSLLLELPILLCCFRALSGSLSMRNDAVNEIVAVKNNFPVIEIVQCRMCHLQFPGEKC 60
Query: 61 SRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCADVKGIRWSVYLVNFRCCRSHD 120
SRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCADVKGIRWSVYLVNFRCCRSHD
Sbjct: 61 SRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCADVKGIRWSVYLVNFRCCRSHD 120
Query: 121 LCNEDL 126
LCNEDL
Sbjct: 121 LCNEDL 126
>gi|222136622 prostate and testis expressed 3 [Homo sapiens]
Length = 98
Score = 53.1 bits (126), Expect = 5e-08
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 46 VQCRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCADVK-GI 104
+QC CHL+ ++C RG G+CTA EACM+ R+++R+ +++M C K C D+ +
Sbjct: 21 LQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRN-TLQISYMVCQKFCRDMTFDL 79
Query: 105 RWSVYLVNFRCCRSHDLCN 123
R Y+ C +++ CN
Sbjct: 80 RNRTYV---HTCCNYNYCN 95
>gi|190886439 hypothetical protein LOC138240 [Homo sapiens]
Length = 161
Score = 41.6 bits (96), Expect = 2e-04
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 48 CRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCAD------V 101
CR C+L P C G C A + C + + G W + GC KN ++ V
Sbjct: 81 CRACNLSLPFHGCLLDLGTCQAEPGQYCK-EEVHIQGGIQWYSVKGCTKNTSECFKSTLV 139
Query: 102 KGIRWSVYLVNFRCCRSHDLCN 123
K I LV CC +H LCN
Sbjct: 140 KRILQLHELVTTHCC-NHSLCN 160
>gi|9955935 acrosomal vesicle protein 1 isoform j precursor [Homo
sapiens]
Length = 121
Score = 40.8 bits (94), Expect = 3e-04
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 1 MDKSLLLELPILLCCFRALSGSLSMRNDAVNEIVAVKNNFPVIEIVQCRMCHLQFPGEKC 60
M++ LLL LL R S + + +++ +V+ P I+ C C KC
Sbjct: 1 MNRFLLLMSLYLLGSARGTSSQPNELSGSIDHQTSVQQ-LPGT-ILNCYTCAYMNDQGKC 58
Query: 61 SRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCADVK----GIRWSVYLVNFRCC 116
RG G C + CM+ ++F+ G GC C + G R + CC
Sbjct: 59 LRGEGTCITQNSQQCMLKKIFE-GGKLQFMVQGCENMCPSMNLFSHGTRMQII-----CC 112
Query: 117 RSHDLCNE 124
R+ CN+
Sbjct: 113 RNQSFCNK 120
>gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo
sapiens]
Length = 210
Score = 40.4 bits (93), Expect = 4e-04
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 45 IVQCRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCADVK-- 102
I+ C C KC RG G C + CM+ ++F+ G GC C +
Sbjct: 132 ILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFE-GGKLQFMVQGCENMCPSMNLF 190
Query: 103 --GIRWSVYLVNFRCCRSHDLCNE 124
G R + CCR+ CN+
Sbjct: 191 SHGTRMQII-----CCRNQSFCNK 209
>gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo
sapiens]
Length = 176
Score = 40.4 bits (93), Expect = 4e-04
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 45 IVQCRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCADVK-- 102
I+ C C KC RG G C + CM+ ++F+ G GC C +
Sbjct: 98 ILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFE-GGKLQFMVQGCENMCPSMNLF 156
Query: 103 --GIRWSVYLVNFRCCRSHDLCNE 124
G R + CCR+ CN+
Sbjct: 157 SHGTRMQII-----CCRNQSFCNK 175
>gi|4501879 acrosomal vesicle protein 1 isoform a precursor [Homo
sapiens]
Length = 265
Score = 40.4 bits (93), Expect = 4e-04
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 45 IVQCRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCADVK-- 102
I+ C C KC RG G C + CM+ ++F+ G GC C +
Sbjct: 187 ILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFE-GGKLQFMVQGCENMCPSMNLF 245
Query: 103 --GIRWSVYLVNFRCCRSHDLCNE 124
G R + CCR+ CN+
Sbjct: 246 SHGTRMQII-----CCRNQSFCNK 264
>gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo
sapiens]
Length = 170
Score = 40.4 bits (93), Expect = 4e-04
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 45 IVQCRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCADVK-- 102
I+ C C KC RG G C + CM+ ++F+ G GC C +
Sbjct: 92 ILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFE-GGKLQFMVQGCENMCPSMNLF 150
Query: 103 --GIRWSVYLVNFRCCRSHDLCNE 124
G R + CCR+ CN+
Sbjct: 151 SHGTRMQII-----CCRNQSFCNK 169
>gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo
sapiens]
Length = 195
Score = 40.4 bits (93), Expect = 4e-04
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 45 IVQCRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCADVK-- 102
I+ C C KC RG G C + CM+ ++F+ G GC C +
Sbjct: 117 ILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFE-GGKLQFMVQGCENMCPSMNLF 175
Query: 103 --GIRWSVYLVNFRCCRSHDLCNE 124
G R + CCR+ CN+
Sbjct: 176 SHGTRMQII-----CCRNQSFCNK 194
>gi|9955927 acrosomal vesicle protein 1 isoform b precursor [Homo
sapiens]
Length = 246
Score = 40.4 bits (93), Expect = 4e-04
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 45 IVQCRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCADVK-- 102
I+ C C KC RG G C + CM+ ++F+ G GC C +
Sbjct: 168 ILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFE-GGKLQFMVQGCENMCPSMNLF 226
Query: 103 --GIRWSVYLVNFRCCRSHDLCNE 124
G R + CCR+ CN+
Sbjct: 227 SHGTRMQII-----CCRNQSFCNK 245
>gi|221554530 prostate and testis expressed 4 [Homo sapiens]
Length = 98
Score = 37.4 bits (85), Expect = 0.003
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 30 VNEIVAVKNNFPVIEIV---QCRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDGN 86
+N ++ V +F ++ V +C C + G KC GRG C A E C F+ D +
Sbjct: 4 MNTLLLVSLSFLYLKEVMGLKCNTC-IYTEGWKCMAGRGTCIAKENELCSTTAYFRGDKH 62
Query: 87 PWLTFMGCLKNCADVKGIRWSVYLVNFRCCRSHDLCN 123
+ T M C C + + + + V C R + CN
Sbjct: 63 MYSTHM-CKYKCREEESSKRGLLRVTLCCDR--NFCN 96
>gi|50845399 lymphocyte antigen 6 complex G5B [Homo sapiens]
Length = 201
Score = 36.2 bits (82), Expect = 0.007
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 41 PVIEIVQCRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLK---- 96
PV +I C C ++ P C G CT ++ CMV ++ D GC +
Sbjct: 21 PVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIY-YDVKVRFIVRGCGQYISY 79
Query: 97 NCADVKGIRWSVYLVNFRCCRSHDLCN 123
C + + ++ Y +CC+ +D CN
Sbjct: 80 RCQEKRNTYFAEYWYQAQCCQ-YDYCN 105
>gi|219881540 hypothetical protein LOC199870 isoform 4 [Homo
sapiens]
Length = 278
Score = 26.6 bits (57), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 48 CRMCHLQFPGEKCSRGRGIC 67
C CH +FP E S+G+ +C
Sbjct: 7 CTKCHQRFPFEALSQGQQLC 26
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 26.6 bits (57), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 48 CRMCHLQFPGEKCSRGRGIC 67
C CH +FP E S+G+ +C
Sbjct: 7 CTKCHQRFPFEALSQGQQLC 26
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 26.6 bits (57), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 48 CRMCHLQFPGEKCSRGRGIC 67
C CH +FP E S+G+ +C
Sbjct: 7 CTKCHQRFPFEALSQGQQLC 26
>gi|221139693 hypothetical protein LOC199870 isoform 5 [Homo
sapiens]
Length = 227
Score = 26.6 bits (57), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 48 CRMCHLQFPGEKCSRGRGIC 67
C CH +FP E S+G+ +C
Sbjct: 7 CTKCHQRFPFEALSQGQQLC 26
>gi|22749341 hypothetical protein LOC199870 isoform 3 [Homo
sapiens]
Length = 307
Score = 26.6 bits (57), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 48 CRMCHLQFPGEKCSRGRGIC 67
C CH +FP E S+G+ +C
Sbjct: 7 CTKCHQRFPFEALSQGQQLC 26
>gi|45593147 EGF-like-domain, multiple 9 [Homo sapiens]
Length = 383
Score = 26.2 bits (56), Expect = 7.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 47 QCRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDG 85
QC +CH + G+ C + IC TT+ C G DG
Sbjct: 76 QC-ICHSGWAGKFCDKDEHIC--TTQSPCQNGGQCMYDG 111
>gi|45545431 EGF-like-domain, multiple 9 [Homo sapiens]
Length = 383
Score = 26.2 bits (56), Expect = 7.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 47 QCRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDG 85
QC +CH + G+ C + IC TT+ C G DG
Sbjct: 76 QC-ICHSGWAGKFCDKDEHIC--TTQSPCQNGGQCMYDG 111
>gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens]
Length = 1430
Score = 26.2 bits (56), Expect = 7.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 68 TATTEEACMVGRMFKRDGN--PWLTFMGCLKN 97
+A TE++ M G +++ GN PW F +KN
Sbjct: 1328 SANTEDSSMSGYLYRSKGNKKPWKHFWFVIKN 1359
>gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens]
Length = 719
Score = 25.8 bits (55), Expect = 9.2
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 56 PGEKCSRGRG--ICTATTEEACMVGRMFKRDGNPWLT 90
P + C+RGRG CT EA V + D W T
Sbjct: 653 PHQLCARGRGEQSCTCRAAEAAPVVKREPLDSPQWAT 689
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.141 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,056,108
Number of Sequences: 37866
Number of extensions: 205240
Number of successful extensions: 479
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 22
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.