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Search of human proteins with 197313662
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197313662 leprecan-like 1 isoform b [Homo sapiens]
(527 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197313662 leprecan-like 1 isoform b [Homo sapiens] 1081 0.0
gi|27764882 leprecan-like 1 isoform a [Homo sapiens] 1081 0.0
gi|186928835 leprecan 1 isoform 1 [Homo sapiens] 542 e-154
gi|226371643 leprecan 1 isoform 2 [Homo sapiens] 531 e-151
gi|28466983 leprecan-like 2 [Homo sapiens] 397 e-110
gi|5453601 cartilage associated protein precursor [Homo sapiens] 100 6e-21
gi|5454038 synaptonemal complex protein SC65 [Homo sapiens] 82 9e-16
gi|13375891 hypothetical protein LOC79701 isoform 1 [Homo sapiens] 55 2e-07
gi|33589818 prolyl 4-hydroxylase, alpha III subunit precursor [H... 40 0.004
gi|217272863 prolyl 4-hydroxylase, alpha II subunit isoform 1 pr... 36 0.076
gi|217272861 prolyl 4-hydroxylase, alpha II subunit isoform 2 pr... 36 0.076
gi|63252893 prolyl 4-hydroxylase, alpha II subunit isoform 2 pre... 36 0.076
gi|63252891 prolyl 4-hydroxylase, alpha II subunit isoform 2 pre... 36 0.076
gi|4758868 prolyl 4-hydroxylase, alpha II subunit isoform 1 prec... 36 0.076
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 34 0.38
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 34 0.38
gi|63252886 prolyl 4-hydroxylase, alpha I subunit isoform 1 prec... 34 0.38
gi|217272851 prolyl 4-hydroxylase, alpha I subunit isoform 3 pre... 34 0.38
gi|217272849 prolyl 4-hydroxylase, alpha I subunit isoform 2 pre... 34 0.38
gi|63252888 prolyl 4-hydroxylase, alpha I subunit isoform 2 prec... 34 0.38
gi|13489073 egl nine homolog 1 [Homo sapiens] 33 0.64
gi|19923142 karyopherin beta 1 [Homo sapiens] 33 0.84
gi|28973797 hypothetical protein LOC79701 isoform 2 [Homo sapiens] 32 1.1
gi|145701012 EGL nine (C.elegans) homolog 2 [Homo sapiens] 32 1.9
gi|16604260 EGL nine (C.elegans) homolog 2 [Homo sapiens] 32 1.9
gi|58197558 tudor domain containing 6 [Homo sapiens] 31 2.4
gi|224809329 FK506 binding protein 5 isoform 1 [Homo sapiens] 30 4.2
gi|224809327 FK506 binding protein 5 isoform 1 [Homo sapiens] 30 4.2
gi|4758384 FK506 binding protein 5 isoform 1 [Homo sapiens] 30 4.2
gi|82799486 phosphodiesterase 4B isoform 1 [Homo sapiens] 30 4.2
>gi|197313662 leprecan-like 1 isoform b [Homo sapiens]
Length = 527
Score = 1081 bits (2796), Expect = 0.0
Identities = 527/527 (100%), Positives = 527/527 (100%)
Query: 1 MEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYF 60
MEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYF
Sbjct: 1 MEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYF 60
Query: 61 VEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPI 120
VEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPI
Sbjct: 61 VEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPI 120
Query: 121 ENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPAS 180
ENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPAS
Sbjct: 121 ENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPAS 180
Query: 181 IEAREDLTMFVKRHKLESELIKSAAEGLGFSYTEPNYWIRYGGRQDENRVPSGVNVEGAE 240
IEAREDLTMFVKRHKLESELIKSAAEGLGFSYTEPNYWIRYGGRQDENRVPSGVNVEGAE
Sbjct: 181 IEAREDLTMFVKRHKLESELIKSAAEGLGFSYTEPNYWIRYGGRQDENRVPSGVNVEGAE 240
Query: 241 VHGFSMGKKLSPKIDRDLREGGPLLYENITFVYNSEQLNGTQRVLLDNVLSEEQCRELHS 300
VHGFSMGKKLSPKIDRDLREGGPLLYENITFVYNSEQLNGTQRVLLDNVLSEEQCRELHS
Sbjct: 241 VHGFSMGKKLSPKIDRDLREGGPLLYENITFVYNSEQLNGTQRVLLDNVLSEEQCRELHS 300
Query: 301 VASGIMLVGDGYRGKTSPHTPNEKFEGATVLKALKSGYEGRVPLKSARLFYDISEKARRI 360
VASGIMLVGDGYRGKTSPHTPNEKFEGATVLKALKSGYEGRVPLKSARLFYDISEKARRI
Sbjct: 301 VASGIMLVGDGYRGKTSPHTPNEKFEGATVLKALKSGYEGRVPLKSARLFYDISEKARRI 360
Query: 361 VESYFMLNSTLYFSYTHMVCRTALSGQQDRRNDLSHPIHADNCLLDPEANECWKEPPAYT 420
VESYFMLNSTLYFSYTHMVCRTALSGQQDRRNDLSHPIHADNCLLDPEANECWKEPPAYT
Sbjct: 361 VESYFMLNSTLYFSYTHMVCRTALSGQQDRRNDLSHPIHADNCLLDPEANECWKEPPAYT 420
Query: 421 FRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAVTKGK 480
FRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAVTKGK
Sbjct: 421 FRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAVTKGK 480
Query: 481 RCAVALWFTLDPLYRELERIQADEVIAILDQEQQGKHELNINPKDEL 527
RCAVALWFTLDPLYRELERIQADEVIAILDQEQQGKHELNINPKDEL
Sbjct: 481 RCAVALWFTLDPLYRELERIQADEVIAILDQEQQGKHELNINPKDEL 527
>gi|27764882 leprecan-like 1 isoform a [Homo sapiens]
Length = 708
Score = 1081 bits (2796), Expect = 0.0
Identities = 527/527 (100%), Positives = 527/527 (100%)
Query: 1 MEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYF 60
MEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYF
Sbjct: 182 MEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYF 241
Query: 61 VEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPI 120
VEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPI
Sbjct: 242 VEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPI 301
Query: 121 ENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPAS 180
ENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPAS
Sbjct: 302 ENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPAS 361
Query: 181 IEAREDLTMFVKRHKLESELIKSAAEGLGFSYTEPNYWIRYGGRQDENRVPSGVNVEGAE 240
IEAREDLTMFVKRHKLESELIKSAAEGLGFSYTEPNYWIRYGGRQDENRVPSGVNVEGAE
Sbjct: 362 IEAREDLTMFVKRHKLESELIKSAAEGLGFSYTEPNYWIRYGGRQDENRVPSGVNVEGAE 421
Query: 241 VHGFSMGKKLSPKIDRDLREGGPLLYENITFVYNSEQLNGTQRVLLDNVLSEEQCRELHS 300
VHGFSMGKKLSPKIDRDLREGGPLLYENITFVYNSEQLNGTQRVLLDNVLSEEQCRELHS
Sbjct: 422 VHGFSMGKKLSPKIDRDLREGGPLLYENITFVYNSEQLNGTQRVLLDNVLSEEQCRELHS 481
Query: 301 VASGIMLVGDGYRGKTSPHTPNEKFEGATVLKALKSGYEGRVPLKSARLFYDISEKARRI 360
VASGIMLVGDGYRGKTSPHTPNEKFEGATVLKALKSGYEGRVPLKSARLFYDISEKARRI
Sbjct: 482 VASGIMLVGDGYRGKTSPHTPNEKFEGATVLKALKSGYEGRVPLKSARLFYDISEKARRI 541
Query: 361 VESYFMLNSTLYFSYTHMVCRTALSGQQDRRNDLSHPIHADNCLLDPEANECWKEPPAYT 420
VESYFMLNSTLYFSYTHMVCRTALSGQQDRRNDLSHPIHADNCLLDPEANECWKEPPAYT
Sbjct: 542 VESYFMLNSTLYFSYTHMVCRTALSGQQDRRNDLSHPIHADNCLLDPEANECWKEPPAYT 601
Query: 421 FRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAVTKGK 480
FRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAVTKGK
Sbjct: 602 FRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAVTKGK 661
Query: 481 RCAVALWFTLDPLYRELERIQADEVIAILDQEQQGKHELNINPKDEL 527
RCAVALWFTLDPLYRELERIQADEVIAILDQEQQGKHELNINPKDEL
Sbjct: 662 RCAVALWFTLDPLYRELERIQADEVIAILDQEQQGKHELNINPKDEL 708
Score = 43.5 bits (101), Expect = 5e-04
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 26/169 (15%)
Query: 19 LQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYFVEDTECRTLC-------- 70
L+L +P Y +G Y + D+E A+R E ALR + E RT C
Sbjct: 34 LELEPGPLQPFDLLYASGAAAYYSGDYERAVRDLEAALRSHR-RLREIRTRCARHCAARH 92
Query: 71 --------EGP-QRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPIE 121
EGP + L +A Y + + +H ++ + R P
Sbjct: 93 PLPPPPPGEGPGAELPLFRSLLGRARCYRSCETQRLGGPASRHRVSEDVRSDFQRRVP-- 150
Query: 122 NFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYES 170
Y+YLQ AY ++ + KA+E A + + +P+ ++ N++ Y +
Sbjct: 151 ------YNYLQRAYIKLNQLEKAVEAAHTFFVANPEHMEMQQNIENYRA 193
>gi|186928835 leprecan 1 isoform 1 [Homo sapiens]
Length = 736
Score = 542 bits (1397), Expect = e-154
Identities = 265/522 (50%), Positives = 354/522 (67%), Gaps = 14/522 (2%)
Query: 1 MEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYF 60
MEMQQN++ Y+ +GV+ D E +PHM+ + GV+ Y + + A+ H E AL+EYF
Sbjct: 177 MEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYF 236
Query: 61 VEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPI 120
V ECR LCEGP ++ Y YL Y A L++AI DHY+QVL C+ CV ELA+ P R P
Sbjct: 237 VAYEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSREKPF 296
Query: 121 ENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPAS 180
E+FLP HY+YLQFAYY +G Y +A+ECAK YLL P+DE + N+ YY ++L + S
Sbjct: 297 EDFLPSHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYYAAMLGEE-HTRS 355
Query: 181 IEAREDLTMFVKRHKLESELIKSAAEGLGFSYTEPNYWI------------RYGGRQDEN 228
I RE + +R LE EL+ A + G + +P+ W + R+
Sbjct: 356 IGPRESAKEYRQRSLLEKELLFFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAV 415
Query: 229 RVPSGVNVEGAEVHGFSMGK-KLSPKIDRDLREGGPLLYENITFVYNSEQLNGTQRVLLD 287
R+ + E+ K K S + R REGGPLLYE I+ NS+ LNG+QRV++D
Sbjct: 416 RISQEIGNLMKEIETLVEEKTKESLDVSRLTREGGPLLYEGISLTMNSKLLNGSQRVVMD 475
Query: 288 NVLSEEQCRELHSVASGIMLVGDGYRGKTSPHTPNEKFEGATVLKALKSGYEGRVPLKSA 347
V+S+ +C+EL + + GDGYRG+TSPHTPNEKF G TV KALK G EG+VPL+SA
Sbjct: 476 GVISDHECQELQRLTNVAATSGDGYRGQTSPHTPNEKFYGVTVFKALKLGQEGKVPLQSA 535
Query: 348 RLFYDISEKARRIVESYFMLNSTLYFSYTHMVCRTALSGQQDRRNDLSHPIHADNCLLDP 407
L+Y+++EK RRI+ESYF L++ LYFSY+H+VCRTA+ Q R D SHP+H DNC+L+
Sbjct: 536 HLYYNVTEKVRRIMESYFRLDTPLYFSYSHLVCRTAIEEVQAERKDDSHPVHVDNCILNA 595
Query: 408 EANECWKEPPAYTFRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGG 467
E C KEPPAYTFRDYSA+LY+N DF+GG F FTE+DAKTVTA ++P+CGR + FSSG
Sbjct: 596 ETLVCVKEPPAYTFRDYSAILYLNGDFDGGNFYFTELDAKTVTAEVQPQCGRAVGFSSGT 655
Query: 468 ENPHGVKAVTKGKRCAVALWFTLDPLYRELERIQADEVIAIL 509
ENPHGVKAVT+G+RCA+ALWFTLDP + E +R+QAD+++ +L
Sbjct: 656 ENPHGVKAVTRGQRCAIALWFTLDPRHSERDRVQADDLVKML 697
Score = 40.4 bits (93), Expect = 0.004
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 128 YDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESL 171
Y+YLQ AY+++ + KA+ A + + +P+ ++ N+DYY+++
Sbjct: 146 YNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQQNLDYYQTM 189
>gi|226371643 leprecan 1 isoform 2 [Homo sapiens]
Length = 697
Score = 531 bits (1368), Expect = e-151
Identities = 263/515 (51%), Positives = 347/515 (67%), Gaps = 16/515 (3%)
Query: 1 MEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYF 60
MEMQQN++ Y+ +GV+ D E +PHM+ + GV+ Y + + A+ H E AL+EYF
Sbjct: 177 MEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYF 236
Query: 61 VEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPI 120
V ECR LCEGP ++ Y YL Y A L++AI DHY+QVL C+ CV ELA+ P R P
Sbjct: 237 VAYEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNCVTELASHPSREKPF 296
Query: 121 ENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPAS 180
E+FLP HY+YLQFAYY +G Y +A+ECAK YLL P+DE + N+ YY ++L + S
Sbjct: 297 EDFLPSHYNYLQFAYYNIGNYTQAVECAKTYLLFFPNDEVMNQNLAYYAAMLGEE-HTRS 355
Query: 181 IEAREDLTMFVKRHKLESELIKSAAEGLGFSYTEPNYWI------------RYGGRQDEN 228
I RE + +R LE EL+ A + G + +P+ W + R+
Sbjct: 356 IGPRESAKEYRQRSLLEKELLFFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAV 415
Query: 229 RVPSGVNVEGAEVHGFSMGK-KLSPKIDRDLREGGPLLYENITFVYNSEQLNGTQRVLLD 287
R+ + E+ K K S + R REGGPLLYE I+ NS+ LNG+QRV++D
Sbjct: 416 RISQEIGNLMKEIETLVEEKTKESLDVSRLTREGGPLLYEGISLTMNSKLLNGSQRVVMD 475
Query: 288 NVLSEEQCRELHSVASGIMLVGDGYRGKTSPHTPNEKFEGATVLKALKSGYEGRVPLKSA 347
V+S+ +C+EL + + GDGYRG+TSPHTPNEKF G TV KALK G EG+VPL+SA
Sbjct: 476 GVISDHECQELQRLTNVAATSGDGYRGQTSPHTPNEKFYGVTVFKALKLGQEGKVPLQSA 535
Query: 348 RLFYDISEKARRIVESYFMLNSTLYFSYTHMVCRTALSGQQDRRNDLSHPIHADNCLLDP 407
L+Y+++EK RRI+ESYF L++ LYFSY+H+VCRTA+ Q R D SHP+H DNC+L+
Sbjct: 536 HLYYNVTEKVRRIMESYFRLDTPLYFSYSHLVCRTAIEEVQAERKDDSHPVHVDNCILNA 595
Query: 408 EANECWKEPPAYTFRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGG 467
E C KEPPAYTFRDYSA+LY+N DF+GG F FTE+DAKTVTA ++P+CGR + FSSG
Sbjct: 596 ETLVCVKEPPAYTFRDYSAILYLNGDFDGGNFYFTELDAKTVTAEVQPQCGRAVGFSSGT 655
Query: 468 ENPHGVKAVTKGKRCAVALWFTLDPLYRELERIQA 502
ENPHGVKAVT+G+RCA+ALWFTLDP R ER++A
Sbjct: 656 ENPHGVKAVTRGQRCAIALWFTLDP--RHSERVRA 688
Score = 40.4 bits (93), Expect = 0.004
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 128 YDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESL 171
Y+YLQ AY+++ + KA+ A + + +P+ ++ N+DYY+++
Sbjct: 146 YNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQQNLDYYQTM 189
>gi|28466983 leprecan-like 2 [Homo sapiens]
Length = 736
Score = 397 bits (1021), Expect = e-110
Identities = 214/533 (40%), Positives = 318/533 (59%), Gaps = 32/533 (6%)
Query: 1 MEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYF 60
++M++++ YR +GV D E PH +Y+ G++ + +A+ E+AL+
Sbjct: 188 LQMREDMAKYRRMSGVRPQSFRDLETPPHWAAYDTGLELLGRQEAGLALPRLEEALQGSL 247
Query: 61 VEDTECRTLCEGPQRF----EEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGR 116
+ CR CEGP+ EE + + GLYEAIA H++QVL C+ CV E ATRPGR
Sbjct: 248 AQMESCRADCEGPEEQQGAEEEEDGAASQGGLYEAIAGHWIQVLQCRQRCVGETATRPGR 307
Query: 117 LSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSI 176
P+ +FLP L A+ +VG +A+E + LL +P+DE ++ Y++ L +
Sbjct: 308 SFPVPDFLPNQLRRLHEAHAQVGNLSQAIENVLSVLLFYPEDEAAKRALNQYQAQLGE-- 365
Query: 177 DPASIEAREDLTMFVKRHKLESELIKSAAEGLGFSYTEPNYW---------IRYGGRQDE 227
+ RED+ F+ R E + A E LG S+ +P+ W +R R+D+
Sbjct: 366 PRPGLGPREDIQRFILRSLGEKRQLYYAMEHLGTSFKDPDPWTPAALIPEALREKLREDQ 425
Query: 228 NRVPSGVNVEGAEVHGFSMGKKLSPKIDRDLREGGPLLYENITFVYNSEQLNGTQRVLLD 287
+ P H K L+ D LL E +T +S QLNG++R +LD
Sbjct: 426 EKRPWD--------HEPVKPKPLTYWKD-------VLLLEGVTLTQDSRQLNGSERAVLD 470
Query: 288 NVLSEEQCRELHSVASGIMLVG--DGYRGKTSPHTPNEKFEGATVLKALKSGYEGRVPLK 345
+L+ +C L +A G GYRG+ SPHTP+E+FEG TVLKA + G V +
Sbjct: 471 GLLTPAECGVLLQLAKDAAGAGARSGYRGRRSPHTPHERFEGLTVLKAAQLARAGTVGSQ 530
Query: 346 SARLFYDISEKARRIVESYFMLNSTLYFSYTHMVCRTALSGQQDRRNDLSHPIHADNCLL 405
A+L ++SE+ R + ++YF L+ S+TH+VCR+A+ G+Q++R DLSHP+HADNC+L
Sbjct: 531 GAKLLLEVSERVRTLTQAYFSPERPLHLSFTHLVCRSAIEGEQEQRMDLSHPVHADNCVL 590
Query: 406 DPEANECWKEPPAYTFRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRMISFSS 465
DP+ ECW+EPPAYT+RDYS LLY+NDDF+GG+ FTE +A TVTA ++P+CGR+++FSS
Sbjct: 591 DPDTGECWREPPAYTYRDYSGLLYLNDDFQGGDLFFTEPNALTVTARVRPRCGRLVAFSS 650
Query: 466 GGENPHGVKAVTKGKRCAVALWFTLDPLYRELERIQADEVIAILDQEQQGKHE 518
G ENPHGV AVT+G+RCA+ALW T P +RE E I+A E++ +E++ + E
Sbjct: 651 GVENPHGVWAVTRGRRCALALWHTWAPEHREQEWIEAKELLQESQEEEEEEEE 703
>gi|5453601 cartilage associated protein precursor [Homo sapiens]
Length = 401
Score = 99.8 bits (247), Expect = 6e-21
Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 9/207 (4%)
Query: 3 MQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYFVE 62
M++N+ Y++ G E + D E K + + V+ Y +++ +I E AL ++F
Sbjct: 181 MKRNMAYYKSLPGAEDY-IKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKA 239
Query: 63 DTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPIEN 122
EC CEG + ++++ Y +IADHY++VL C+ +C L G P+E
Sbjct: 240 FYECLAACEGSREIKDFK------DFYLSIADHYVEVLECKIQCEENLTPVIGGY-PVEK 292
Query: 123 FLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDD-SIDPASI 181
F+ Y YLQFAYY++ + A CA +YLL +D+ + N+ YY+ D +
Sbjct: 293 FVATMYHYLQFAYYKLNDLKNAAPCAVSYLLFDQNDKVMQQNLVYYQYHRDTWGLSDEHF 352
Query: 182 EAREDLTMFVKRHKLESELIKSAAEGL 208
+ R + F L+ EL A E +
Sbjct: 353 QPRPEAVQFFNVTTLQKELYDFAKENI 379
Score = 48.1 bits (113), Expect = 2e-05
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 128 YDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESL--LDDSIDPASIEARE 185
Y +LQFAY++ KA+ A +LL HPDDE + N+ YY+SL +D I ++ E
Sbjct: 148 YKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPGAEDYIKDLETKSYE 207
Query: 186 DL 187
L
Sbjct: 208 SL 209
>gi|5454038 synaptonemal complex protein SC65 [Homo sapiens]
Length = 437
Score = 82.4 bits (202), Expect = 9e-16
Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Query: 10 YRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYFVEDTECRTL 69
Y+ V L D EA+P+ + VK Y + DF + E+AL EY C
Sbjct: 185 YQGMLDVADESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLAVFARCLAG 244
Query: 70 CEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPIENFLPLHYD 129
CEG +E + +K Y AIAD + + L C+ +C L G ++ F+ Y
Sbjct: 245 CEGA-----HEQVDFK-DFYPAIADLFAESLQCKVDCEANLTPNVGGYF-VDKFVATMYH 297
Query: 130 YLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYY 168
YLQFAYY++ + +A A +Y+L P D + N+ YY
Sbjct: 298 YLQFAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLVYY 336
Score = 50.1 bits (118), Expect = 5e-06
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 28 PHMESYNAGVKHYEADDFEMAIRHFEQALREY-FVEDTE--CRTLCEGPQRFEEYEYLGY 84
P +Y ++ YE + + + R+ E ALR + + D+E C C GP + + G
Sbjct: 35 PLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDSEAFCHANCSGPAPAAKPDPDGG 94
Query: 85 KAGLYEAIADHYMQVL---VCQHECVRELAT----RPGR--LSPIENFLPLHYDYLQFAY 135
+A + + +VL C C R L P R L ++ LP Y YL +A
Sbjct: 95 RADEWACELRLFGRVLERAACLRRCKRTLPAFQVPYPPRQLLRDFQSRLP--YQYLHYAL 152
Query: 136 YRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDP-ASIEAREDLTMFVKRH 194
++ KA+ A +L +P E ++YY+ +LD + + +EA+ +F++
Sbjct: 153 FKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDVADESLTDLEAQPYEAVFLRAV 212
Query: 195 KL 196
KL
Sbjct: 213 KL 214
>gi|13375891 hypothetical protein LOC79701 isoform 1 [Homo sapiens]
Length = 319
Score = 54.7 bits (130), Expect = 2e-07
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 423 DYSALLYMN---DDFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAVTKG 479
DY++LLY++ +DF GG F+F E A +++P+ GR+ F+SG EN H V+ V G
Sbjct: 240 DYTSLLYLSNYLEDFGGGRFMFMEEGANK---TVEPRAGRVSFFTSGSENLHRVEKVHWG 296
Query: 480 KRCAVALWFTLDP 492
R A+ + F+ +P
Sbjct: 297 TRYAITIAFSCNP 309
>gi|33589818 prolyl 4-hydroxylase, alpha III subunit precursor [Homo
sapiens]
Length = 544
Score = 40.4 bits (93), Expect = 0.004
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 129 DYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPASIEA 183
D+L FAY+R G AL ++ +LL PD++ + NV YE LL +S + EA
Sbjct: 231 DHLAFAYFRAGNVSCALSLSREFLLYSPDNKRMARNVLKYERLLAESPNHVVAEA 285
>gi|217272863 prolyl 4-hydroxylase, alpha II subunit isoform 1
precursor [Homo sapiens]
Length = 535
Score = 36.2 bits (82), Expect = 0.076
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 129 DYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDD 174
DYL +A +++G+ +ALE + L P E N+ Y+E LL++
Sbjct: 211 DYLSYAVFQLGDLHRALELTRRLLSLDPSHERAGGNLRYFEQLLEE 256
>gi|217272861 prolyl 4-hydroxylase, alpha II subunit isoform 2
precursor [Homo sapiens]
Length = 533
Score = 36.2 bits (82), Expect = 0.076
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 129 DYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDD 174
DYL +A +++G+ +ALE + L P E N+ Y+E LL++
Sbjct: 211 DYLSYAVFQLGDLHRALELTRRLLSLDPSHERAGGNLRYFEQLLEE 256
>gi|63252893 prolyl 4-hydroxylase, alpha II subunit isoform 2
precursor [Homo sapiens]
Length = 533
Score = 36.2 bits (82), Expect = 0.076
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 129 DYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDD 174
DYL +A +++G+ +ALE + L P E N+ Y+E LL++
Sbjct: 211 DYLSYAVFQLGDLHRALELTRRLLSLDPSHERAGGNLRYFEQLLEE 256
>gi|63252891 prolyl 4-hydroxylase, alpha II subunit isoform 2
precursor [Homo sapiens]
Length = 533
Score = 36.2 bits (82), Expect = 0.076
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 129 DYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDD 174
DYL +A +++G+ +ALE + L P E N+ Y+E LL++
Sbjct: 211 DYLSYAVFQLGDLHRALELTRRLLSLDPSHERAGGNLRYFEQLLEE 256
>gi|4758868 prolyl 4-hydroxylase, alpha II subunit isoform 1
precursor [Homo sapiens]
Length = 535
Score = 36.2 bits (82), Expect = 0.076
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 129 DYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDD 174
DYL +A +++G+ +ALE + L P E N+ Y+E LL++
Sbjct: 211 DYLSYAVFQLGDLHRALELTRRLLSLDPSHERAGGNLRYFEQLLEE 256
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 33.9 bits (76), Expect = 0.38
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 264 LLYENITFVYNSEQLNGTQRVLLDNVLSEEQCRELHSVASGIMLVGDGYRGKTSPHTPNE 323
LL + + S+Q +QR+L D LSEEQ R L ++L + R + T +
Sbjct: 3262 LLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLE---LQVLLESEKVRIREMSSTLDR 3318
Query: 324 KFEGATVLKALKSGYEGRVPLKSARLFYD----ISEKARRIVESYFMLNSTLYFSYTHMV 379
+ E L++ + R PL S L + + EK RIVE +LN T + +
Sbjct: 3319 ERELHAQLQSSDGTGQSRPPLPSEDLLKELQKQLEEKHSRIVE---LLNETEKYKLDSLQ 3375
Query: 380 CRTALSGQQDRRNDLSHPIHADNCLLDPEAN 410
R + ++DR+ +H + EAN
Sbjct: 3376 TRQQM--EKDRQ------VHRKTLQTEQEAN 3398
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 33.9 bits (76), Expect = 0.38
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 264 LLYENITFVYNSEQLNGTQRVLLDNVLSEEQCRELHSVASGIMLVGDGYRGKTSPHTPNE 323
LL + + S+Q +QR+L D LSEEQ R L ++L + R + T +
Sbjct: 3254 LLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLE---LQVLLESEKVRIREMSSTLDR 3310
Query: 324 KFEGATVLKALKSGYEGRVPLKSARLFYD----ISEKARRIVESYFMLNSTLYFSYTHMV 379
+ E L++ + R PL S L + + EK RIVE +LN T + +
Sbjct: 3311 ERELHAQLQSSDGTGQSRPPLPSEDLLKELQKQLEEKHSRIVE---LLNETEKYKLDSLQ 3367
Query: 380 CRTALSGQQDRRNDLSHPIHADNCLLDPEAN 410
R + ++DR+ +H + EAN
Sbjct: 3368 TRQQM--EKDRQ------VHRKTLQTEQEAN 3390
>gi|63252886 prolyl 4-hydroxylase, alpha I subunit isoform 1
precursor [Homo sapiens]
Length = 534
Score = 33.9 bits (76), Expect = 0.38
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 93 ADHYMQVLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYL 152
AD+Y L + + +R+L G +S I+ L DYL +A Y+ G+ KAL K L
Sbjct: 178 ADYYHTELWME-QALRQLDE--GEISTIDKVSVL--DYLSYAVYQQGDLDKALLLTKKLL 232
Query: 153 LCHPDDEDVLDNVDYYESLL 172
P+ + N+ Y+E ++
Sbjct: 233 ELDPEHQRANGNLKYFEYIM 252
>gi|217272851 prolyl 4-hydroxylase, alpha I subunit isoform 3
precursor [Homo sapiens]
Length = 516
Score = 33.9 bits (76), Expect = 0.38
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 93 ADHYMQVLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYL 152
AD+Y L + + +R+L G +S I+ L DYL +A Y+ G+ KAL K L
Sbjct: 178 ADYYHTELWME-QALRQLDE--GEISTIDKVSVL--DYLSYAVYQQGDLDKALLLTKKLL 232
Query: 153 LCHPDDEDVLDNVDYYESLL 172
P+ + N+ Y+E ++
Sbjct: 233 ELDPEHQRANGNLKYFEYIM 252
>gi|217272849 prolyl 4-hydroxylase, alpha I subunit isoform 2
precursor [Homo sapiens]
Length = 534
Score = 33.9 bits (76), Expect = 0.38
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 93 ADHYMQVLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYL 152
AD+Y L + + +R+L G +S I+ L DYL +A Y+ G+ KAL K L
Sbjct: 178 ADYYHTELWME-QALRQLDE--GEISTIDKVSVL--DYLSYAVYQQGDLDKALLLTKKLL 232
Query: 153 LCHPDDEDVLDNVDYYESLL 172
P+ + N+ Y+E ++
Sbjct: 233 ELDPEHQRANGNLKYFEYIM 252
>gi|63252888 prolyl 4-hydroxylase, alpha I subunit isoform 2
precursor [Homo sapiens]
Length = 534
Score = 33.9 bits (76), Expect = 0.38
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 93 ADHYMQVLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYL 152
AD+Y L + + +R+L G +S I+ L DYL +A Y+ G+ KAL K L
Sbjct: 178 ADYYHTELWME-QALRQLDE--GEISTIDKVSVL--DYLSYAVYQQGDLDKALLLTKKLL 232
Query: 153 LCHPDDEDVLDNVDYYESLL 172
P+ + N+ Y+E ++
Sbjct: 233 ELDPEHQRANGNLKYFEYIM 252
>gi|13489073 egl nine homolog 1 [Homo sapiens]
Length = 426
Score = 33.1 bits (74), Expect = 0.64
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 422 RDYSALLYMNDDFEG---GEFIFTEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAVTK 478
R + + Y+N D++ G + + K A I+PK R++ F S NPH V+
Sbjct: 322 RCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDRRNPHEVQP-AY 380
Query: 479 GKRCAVALWF 488
R A+ +W+
Sbjct: 381 ATRYAITVWY 390
>gi|19923142 karyopherin beta 1 [Homo sapiens]
Length = 876
Score = 32.7 bits (73), Expect = 0.84
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 85 KAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKA 144
KA + H++ +VC+ + R L + + L+Y Y++ Y +
Sbjct: 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME-TYMGPALFAIT 264
Query: 145 LECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPASIEARE 185
+E K+ + DE L ++++ ++ D+ +D A IEA E
Sbjct: 265 IEAMKSDI-----DEVALQGIEFWSNVCDEEMDLA-IEASE 299
>gi|28973797 hypothetical protein LOC79701 isoform 2 [Homo sapiens]
Length = 331
Score = 32.3 bits (72), Expect = 1.1
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 423 DYSALLYMN---DDFEGGEFIFTEMDA-KTVTASIKPKCGRMIS 462
DY++LLY++ +DF GG F+F E A KTV C RM+S
Sbjct: 240 DYTSLLYLSNYLEDFGGGRFMFMEEGANKTVERRAGCFCFRMMS 283
>gi|145701012 EGL nine (C.elegans) homolog 2 [Homo sapiens]
Length = 407
Score = 31.6 bits (70), Expect = 1.9
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 422 RDYSALLYMNDDFE----GGEF-IFTEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAV 476
R + + Y+N +++ GG IF E + V A+I+P R++ F S NPH VK
Sbjct: 306 RCITCIYYLNQNWDVKVHGGLLQIFPE--GRPVVANIEPLFDRLLIFWSDRRNPHEVKP- 362
Query: 477 TKGKRCAVALWF 488
R A+ +W+
Sbjct: 363 AYATRYAITVWY 374
>gi|16604260 EGL nine (C.elegans) homolog 2 [Homo sapiens]
Length = 407
Score = 31.6 bits (70), Expect = 1.9
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 422 RDYSALLYMNDDFE----GGEF-IFTEMDAKTVTASIKPKCGRMISFSSGGENPHGVKAV 476
R + + Y+N +++ GG IF E + V A+I+P R++ F S NPH VK
Sbjct: 306 RCITCIYYLNQNWDVKVHGGLLQIFPE--GRPVVANIEPLFDRLLIFWSDRRNPHEVKP- 362
Query: 477 TKGKRCAVALWF 488
R A+ +W+
Sbjct: 363 AYATRYAITVWY 374
>gi|58197558 tudor domain containing 6 [Homo sapiens]
Length = 2096
Score = 31.2 bits (69), Expect = 2.4
Identities = 58/252 (23%), Positives = 93/252 (36%), Gaps = 65/252 (25%)
Query: 297 ELHSVASGIMLVGDGYRGKTSPHTPNEKFEGATVLKALKSGYEGRVPL------------ 344
EL S+ LV D +G+ SP PN V K + ++PL
Sbjct: 1850 ELESIELQNSLVVDEEKGELSPVPPNVPLSQECVTKGAMELFTLQLPLSCEAEKQPELEL 1909
Query: 345 ---------KSARLFYDISEKARRIVESYFMLNSTLYFSYTHMVCRTALSGQQDRRNDLS 395
K L +S+KA+ + + M S+ S+ D + +S
Sbjct: 1910 PTAQLPLDDKMDPLSLGVSQKAQESMCTEDMRKSSCVESF-------------DDQRRMS 1956
Query: 396 HPIHADNCLLDP----EANECWKEPPAYTFRD-YSALLYMNDDFEGGEFIFTEMDAKTVT 450
+H +C DP E N C +E Y RD SAL+ + + E +
Sbjct: 1957 LHLHGADC--DPKTQNEMNICEEEFVEYKNRDAISALMPLFSEEESSD------------ 2002
Query: 451 ASIKPKCGRMISFSSGGENPHGVKAVTKGKRCAVALWFTLDPLYRELERIQADEVIAILD 510
K G S+ +N + +KA T G +C V W +L + + E IL+
Sbjct: 2003 -GSKHNNGLPDHISAQLQNTYTLKAFTVGSKCVV--WSSLRNTWSKCE---------ILE 2050
Query: 511 QEQQGKHELNIN 522
++G LN++
Sbjct: 2051 TAEEGTRVLNLS 2062
>gi|224809329 FK506 binding protein 5 isoform 1 [Homo sapiens]
Length = 457
Score = 30.4 bits (67), Expect = 4.2
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 18/167 (10%)
Query: 45 FEMAIRHFEQALREYFVEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQH 104
+E+ ++ FE+A + ++ E E +E + +K G Y Y ++ V
Sbjct: 243 YEVTLKSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKI-VSWL 298
Query: 105 ECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDN 164
E L+ + + S E+FL + L Y ++ EY KA+EC L +E L
Sbjct: 299 EMEYGLSEKESKAS--ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYR 356
Query: 165 -------VDYYESLLDD-----SIDPASIEAREDLTMFVKRHKLESE 199
++ +ES D ++P + AR ++M K+ K +E
Sbjct: 357 RGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403
>gi|224809327 FK506 binding protein 5 isoform 1 [Homo sapiens]
Length = 457
Score = 30.4 bits (67), Expect = 4.2
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 18/167 (10%)
Query: 45 FEMAIRHFEQALREYFVEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQH 104
+E+ ++ FE+A + ++ E E +E + +K G Y Y ++ V
Sbjct: 243 YEVTLKSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKI-VSWL 298
Query: 105 ECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDN 164
E L+ + + S E+FL + L Y ++ EY KA+EC L +E L
Sbjct: 299 EMEYGLSEKESKAS--ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYR 356
Query: 165 -------VDYYESLLDD-----SIDPASIEAREDLTMFVKRHKLESE 199
++ +ES D ++P + AR ++M K+ K +E
Sbjct: 357 RGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403
>gi|4758384 FK506 binding protein 5 isoform 1 [Homo sapiens]
Length = 457
Score = 30.4 bits (67), Expect = 4.2
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 18/167 (10%)
Query: 45 FEMAIRHFEQALREYFVEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQH 104
+E+ ++ FE+A + ++ E E +E + +K G Y Y ++ V
Sbjct: 243 YEVTLKSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKI-VSWL 298
Query: 105 ECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDN 164
E L+ + + S E+FL + L Y ++ EY KA+EC L +E L
Sbjct: 299 EMEYGLSEKESKAS--ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYR 356
Query: 165 -------VDYYESLLDD-----SIDPASIEAREDLTMFVKRHKLESE 199
++ +ES D ++P + AR ++M K+ K +E
Sbjct: 357 RGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403
>gi|82799486 phosphodiesterase 4B isoform 1 [Homo sapiens]
Length = 736
Score = 30.4 bits (67), Expect = 4.2
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 153 LCHPDDEDVLD----NVDYYESLLDDSIDPASIEAREDLTMFVKRHKLESELIKSAAEG 207
L PD +D+LD N ++Y+S++ S P E D +++ + E L + +EG
Sbjct: 633 LVQPDAQDILDTLEDNRNWYQSMIPQSPSPPLDEQNRDCQGLMEKFQFELTLDEEDSEG 691
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,404,258
Number of Sequences: 37866
Number of extensions: 918046
Number of successful extensions: 2102
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2059
Number of HSP's gapped (non-prelim): 46
length of query: 527
length of database: 18,247,518
effective HSP length: 107
effective length of query: 420
effective length of database: 14,195,856
effective search space: 5962259520
effective search space used: 5962259520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.