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Search of human proteins with 194688142
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194688142 SEBOX homeobox isoform 1 [Homo sapiens]
(216 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194688142 SEBOX homeobox isoform 1 [Homo sapiens] 455 e-128
gi|140972151 SEBOX homeobox isoform 2 [Homo sapiens] 384 e-107
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 77 9e-15
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 74 7e-14
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 72 4e-13
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 72 4e-13
gi|46249382 paired-like homeobox 2a [Homo sapiens] 72 4e-13
gi|12707580 paired-like homeobox 2b [Homo sapiens] 72 5e-13
gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Hom... 72 5e-13
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom... 70 1e-12
gi|24497589 aristaless related homeobox [Homo sapiens] 67 2e-11
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 67 2e-11
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 66 3e-11
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 66 3e-11
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 66 3e-11
gi|57232759 intestine-specific homeobox [Homo sapiens] 65 3e-11
gi|7706659 paired related homeobox 2 [Homo sapiens] 65 3e-11
gi|169881277 PROP paired-like homeobox 1 [Homo sapiens] 65 4e-11
gi|13994335 Mix-like homeobox protein 1 [Homo sapiens] 65 6e-11
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 64 1e-10
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 64 1e-10
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 64 1e-10
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 64 1e-10
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 64 1e-10
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 64 1e-10
gi|4557489 cone-rod homeobox protein [Homo sapiens] 63 2e-10
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 62 4e-10
gi|34365783 visual system homeobox 2 [Homo sapiens] 61 8e-10
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 61 8e-10
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 60 1e-09
>gi|194688142 SEBOX homeobox isoform 1 [Homo sapiens]
Length = 216
Score = 455 bits (1171), Expect = e-128
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MGGSGVGTAWHGPLARPSGTLPFASSMPSPVDASSADGGSGLGSHRRKRTTFSKGQLLEL 60
MGGSGVGTAWHGPLARPSGTLPFASSMPSPVDASSADGGSGLGSHRRKRTTFSKGQLLEL
Sbjct: 1 MGGSGVGTAWHGPLARPSGTLPFASSMPSPVDASSADGGSGLGSHRRKRTTFSKGQLLEL 60
Query: 61 ERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSC 120
ERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSC
Sbjct: 61 ERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSC 120
Query: 121 SLPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAG 180
SLPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAG
Sbjct: 121 SLPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAG 180
Query: 181 ASEVHPSLERATPQTSLGSLSDLIYALAIVVNVDHS 216
ASEVHPSLERATPQTSLGSLSDLIYALAIVVNVDHS
Sbjct: 181 ASEVHPSLERATPQTSLGSLSDLIYALAIVVNVDHS 216
>gi|140972151 SEBOX homeobox isoform 2 [Homo sapiens]
Length = 215
Score = 384 bits (985), Expect = e-107
Identities = 186/212 (87%), Positives = 189/212 (89%), Gaps = 3/212 (1%)
Query: 8 TAWHG---PLARPSGTLPFASSMPSPVDASSADGGSGLGSHRRKRTTFSKGQLLELERAF 64
T W G P PS + + + DGGSGLGSHRRKRTTFSKGQLLELERAF
Sbjct: 4 TGWTGLCLPPVNPSRVSSSSLETSTTESIFAHDGGSGLGSHRRKRTTFSKGQLLELERAF 63
Query: 65 AAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSCSLPD 124
AAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSCSLPD
Sbjct: 64 AAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSCSLPD 123
Query: 125 TLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAGASEV 184
TLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAGASEV
Sbjct: 124 TLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAGASEV 183
Query: 185 HPSLERATPQTSLGSLSDLIYALAIVVNVDHS 216
HPSLERATPQTSLGSLSDLIYALAIVVNVDHS
Sbjct: 184 HPSLERATPQTSLGSLSDLIYALAIVVNVDHS 215
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 77.4 bits (189), Expect = 9e-15
Identities = 65/190 (34%), Positives = 87/190 (45%), Gaps = 36/190 (18%)
Query: 29 SPVDASSADGGSGLG--------SHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAW 80
SP + + +GG GLG HRR RTTF+ QL +LERAF A YP++ + E LA
Sbjct: 4 SPGEGPATEGG-GLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAA 62
Query: 81 VTCLPEAKVQVWFQKRWAK-----IIKNRKSGILSPG-SECPQSSCSLPDTLQQPWDPQM 134
LPE +VQVWFQ R AK +++ + +P E P + P + P +P +
Sbjct: 63 KVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWL 122
Query: 135 PGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAG-----------ASE 183
PP G P+ P PGL Q G A AP + G A E
Sbjct: 123 GPGPPAVPGLPRLLG-------PGPGL---QASFGPHAFAPTFADGFALEEASLRLLAKE 172
Query: 184 VHPSLERATP 193
+L+RA P
Sbjct: 173 HAQALDRAWP 182
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 74.3 bits (181), Expect = 7e-14
Identities = 61/183 (33%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 24 ASSMPSPVDASSADGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTC 83
+S +PSP++ AD S G RR RTTF+ QL ELE+ F YP++ E LA T
Sbjct: 195 SSDLPSPLE--KADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTD 252
Query: 84 LPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSCSLP-----DTLQQPWDPQMPGQP 138
L EA+VQVWFQ R AK K + G + ++ LP + Q +P G
Sbjct: 253 LTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNN 312
Query: 139 PPSSGTPQRTSVCRH-SSCPAPGLSPRQGWEGAKAVAPWGSAGASEVHPSLERATPQTSL 197
+S P C +C +P P GA +V + S + H QT +
Sbjct: 313 GAASPVPACVVPCDPVPACMSPHAHP--PGSGASSVTDFLSVSGAGSH------VGQTHM 364
Query: 198 GSL 200
GSL
Sbjct: 365 GSL 367
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 72.0 bits (175), Expect = 4e-13
Identities = 53/170 (31%), Positives = 75/170 (44%), Gaps = 8/170 (4%)
Query: 21 LPFASSMPSPVDASSADGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAW 80
LP + +P ++ + RR RTTFS QL ELE+ F YP++ E LA
Sbjct: 134 LPLSPGLPDSMELAK-----NKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLAL 188
Query: 81 VTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSCSLPDTLQQPWDPQMPGQ--P 138
T L EA+VQVWFQ R AK K + G + G ++ + + PQ+
Sbjct: 189 RTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWA 248
Query: 139 PPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAGASEVHPSL 188
P SG+P + P+P +SP G+ A G S HP +
Sbjct: 249 SPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVA-GFMGVPAPSAAHPGI 297
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 72.0 bits (175), Expect = 4e-13
Identities = 62/172 (36%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Query: 15 ARPSGTLPFASSMPSPVDASSADGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNIST 74
ARPS LP P+ +A ++ HRR RTTF+ QL ELERAF YP++ +
Sbjct: 109 ARPSPGLPVG---PATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS 165
Query: 75 HEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSCSLPDTLQQPWDPQM 134
E LA LPE +VQVWFQ R AK + K L S Q S L + P
Sbjct: 166 REELAGKVNLPEVRVQVWFQNRRAKWRRQEK---LEVSSMKLQDSPLLSFSRSPPSATLS 222
Query: 135 PGQPPPSSGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAGASEVHP 186
P P SG PA G P + W G P G A A + P
Sbjct: 223 PLGAGPGSG-----------GGPAGGALPLESWLGPP--LPGGGATALQSLP 261
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 72.0 bits (175), Expect = 4e-13
Identities = 56/160 (35%), Positives = 68/160 (42%), Gaps = 21/160 (13%)
Query: 46 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 105
RR RTTF+ QL ELER FA YP+I T E LA L EA+VQVWFQ R AK K +
Sbjct: 91 RRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 150
Query: 106 SG-----------------ILSPGSECPQSSCS-LPDTLQQPWDPQMPGQPPPSSGTPQR 147
+ S + +S+CS PD+ P PG P
Sbjct: 151 AASAKGAAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLSPSPL 210
Query: 148 TSVCRHSSCPAPGLSPRQG--WEGAKAVAPWG-SAGASEV 184
P PG P +G W G G AGA+E+
Sbjct: 211 PVALGSGPGPGPGPQPLKGALWAGVAGGGGGGPGAGAAEL 250
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 71.6 bits (174), Expect = 5e-13
Identities = 54/142 (38%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Query: 46 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 105
RR RTTF+ QL ELER FA YP+I T E LA L EA+VQVWFQ R AK K +
Sbjct: 99 RRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER 158
Query: 106 SGILSP-----GSECPQSSCSLPDTLQQ--PWDPQMPGQPPPSSGTPQRTSVCRHSSCPA 158
+ + GS +S S D ++ DP G P P+ P T C +
Sbjct: 159 AAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPN---PNPTPSCGANGGGG 215
Query: 159 PGLSPRQGWEGAKAVAPWGSAG 180
G SP A P G G
Sbjct: 216 GGPSPAGAPGAAGPGGPGGEPG 237
>gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Homo
sapiens]
Length = 377
Score = 71.6 bits (174), Expect = 5e-13
Identities = 71/209 (33%), Positives = 91/209 (43%), Gaps = 21/209 (10%)
Query: 9 AWHGPLARPS-GTLPFASSMPSPVDASSADGGSGLGSHRRKRTTFSKGQLLELERAFAAW 67
A H P RPS L A + + A GS RR RT F+ QL LE+ F
Sbjct: 31 AQHAPDYRPSVHALTLAERLADII--LEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKT 88
Query: 68 PYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKS---GILSPGSECP------QS 118
YP++ E LA T LPEA+VQVWF+ R AK K ++S L E ++
Sbjct: 89 HYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKA 148
Query: 119 SCSLPDT-LQQPWDPQMPGQPPPS----SGTPQRTSVCRHSSCPAPGLSPRQGWEGAKAV 173
PDT L P++PG PP+ S + Q S P PR G E KA
Sbjct: 149 EAPTPDTQLDTEQPPRLPGSDPPAELHLSLSEQSASESAPEDQPDREEDPRAGAEDPKAE 208
Query: 174 APWGSAGASEVHPSLERATPQT-SLGSLS 201
S GA +R +P+ S GSL+
Sbjct: 209 K---SPGADSKGLGCKRGSPKADSPGSLT 234
>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
sapiens]
Length = 382
Score = 70.1 bits (170), Expect = 1e-12
Identities = 62/178 (34%), Positives = 80/178 (44%), Gaps = 18/178 (10%)
Query: 39 GSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWA 98
GS RR RT F+ QL LE+ F YP++ E LA T LPEA+VQVWF+ R A
Sbjct: 65 GSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRA 124
Query: 99 KIIKNRKS---GILSPGSECP------QSSCSLPDT-LQQPWDPQMPGQPPPS----SGT 144
K K ++S L E ++ PDT L P++PG PP+ S +
Sbjct: 125 KFRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLS 184
Query: 145 PQRTSVCRHSSCPAPGLSPRQGWEGAKAVAPWGSAGASEVHPSLERATPQT-SLGSLS 201
Q S P PR G E KA S GA +R +P+ S GSL+
Sbjct: 185 EQSASESAPEDQPDREEDPRAGAEDPKAEK---SPGADSKGLGCKRGSPKADSPGSLT 239
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 66.6 bits (161), Expect = 2e-11
Identities = 46/112 (41%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 33 ASSADGGSGL--GSHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQ 90
++ +D GL RR RTTF+ QL ELERAF YP++ T E LA L EA+VQ
Sbjct: 314 SAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 373
Query: 91 VWFQKRWAKIIKNRKSGILS--PGSECPQSSCSLPDTLQQPWDPQMPGQPPP 140
VWFQ R AK K K+G + PG P P + P P + P P
Sbjct: 374 VWFQNRRAKWRKREKAGAQTHPPGLPFPG-----PLSATHPLSPYLDASPFP 420
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 66.6 bits (161), Expect = 2e-11
Identities = 46/131 (35%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 46 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 105
RR RTTF+ QL LER F YP+ E LA L EA+VQVWFQ R AK +N +
Sbjct: 95 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER 154
Query: 106 SGILSPGSECPQSSCSLPDTLQQPWDPQMPGQPPP--SSGTPQRTSVCRHSSCPAPGLSP 163
+ + + + +S ++QP P+ +P S GT S S SP
Sbjct: 155 AMLANKNASLLKSYSGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMATYSATCANNSP 214
Query: 164 RQGWEGAKAVA 174
QG A ++A
Sbjct: 215 AQGINMANSIA 225
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 65.9 bits (159), Expect = 3e-11
Identities = 51/135 (37%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 46 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 105
RR RTTF+ QL ELE+AF YP+I T E LA T L EA+VQVWF R A+ K
Sbjct: 218 RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG 277
Query: 106 SGILS------PGSECPQSSCSLPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAP 159
+ L+ PG P +LP P+ Q+P P++ Q H P P
Sbjct: 278 ANQLAAFNHLLPGGFPPTGMPTLP-----PY--QLPDSTYPTTTISQDGGSTVHRPQPLP 330
Query: 160 GLSPRQGWEGAKAVA 174
+ QG A A A
Sbjct: 331 PSTMHQGGLAAAAAA 345
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 65.9 bits (159), Expect = 3e-11
Identities = 51/135 (37%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 46 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 105
RR RTTF+ QL ELE+AF YP+I T E LA T L EA+VQVWF R A+ K
Sbjct: 216 RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG 275
Query: 106 SGILS------PGSECPQSSCSLPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAP 159
+ L+ PG P +LP P+ Q+P P++ Q H P P
Sbjct: 276 ANQLAAFNHLLPGGFPPTGMPTLP-----PY--QLPDSTYPTTTISQDGGSTVHRPQPLP 328
Query: 160 GLSPRQGWEGAKAVA 174
+ QG A A A
Sbjct: 329 PSTMHQGGLAAAAAA 343
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 65.9 bits (159), Expect = 3e-11
Identities = 51/135 (37%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 46 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 105
RR RTTF+ QL ELE+AF YP+I T E LA T L EA+VQVWF R A+ K
Sbjct: 218 RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG 277
Query: 106 SGILS------PGSECPQSSCSLPDTLQQPWDPQMPGQPPPSSGTPQRTSVCRHSSCPAP 159
+ L+ PG P +LP P+ Q+P P++ Q H P P
Sbjct: 278 ANQLAAFNHLLPGGFPPTGMPTLP-----PY--QLPDSTYPTTTISQDGGSTVHRPQPLP 330
Query: 160 GLSPRQGWEGAKAVA 174
+ QG A A A
Sbjct: 331 PSTMHQGGLAAAAAA 345
>gi|57232759 intestine-specific homeobox [Homo sapiens]
Length = 245
Score = 65.5 bits (158), Expect = 3e-11
Identities = 48/133 (36%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 41 GLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKI 100
G S RR RTTF+ QL ELE+ F YP++ LA LPEA+VQ+WFQ + AK
Sbjct: 78 GRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKW 137
Query: 101 IKNRKSGILSPGSECPQSSCSLP---DTLQQPW-DPQMPGQPPPSSGTPQRTSVCRHSSC 156
K K G L + ++S +LP D W + PP+S P +
Sbjct: 138 RKQEKIGNLGAPQQLSEASVALPTNLDVAGPTWTSTALRRLAPPTSCCPSAQDQLASAWF 197
Query: 157 PA-PGLSPRQGWE 168
PA L P WE
Sbjct: 198 PAWITLLPAHPWE 210
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 65.5 bits (158), Expect = 3e-11
Identities = 49/144 (34%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 9 AWHGPLARPSGTLPFASSMPSPVDASSADGGSGLG---SHRRKRTTFSKGQLLELERAFA 65
A G PSG + + P + S GS RR RTTF+ QL LER F
Sbjct: 65 AREGAAREPSGGSSGSEAAPQDGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFE 124
Query: 66 AWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILSPGSECPQSSCSLPDT 125
YP+ E LA L EA+VQVWFQ R AK +N ++ + S S SL +
Sbjct: 125 RTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLAS-------RSASLLKS 177
Query: 126 LQQPWDPQMPGQPPPSSGTPQRTS 149
Q + P P P++ +P S
Sbjct: 178 YSQEAAIEQPVAPRPTALSPDYLS 201
>gi|169881277 PROP paired-like homeobox 1 [Homo sapiens]
Length = 226
Score = 65.1 bits (157), Expect = 4e-11
Identities = 45/104 (43%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 44 SHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKN 103
S RR RTTFS QL +LE AF YP+I E LA T L EA++QVWFQ R AK K
Sbjct: 68 SRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQ 127
Query: 104 RKSGILSPGSECPQSSCS--LPDTLQQPWDPQMPGQPPPSSGTP 145
+S +L P + ++ S LP++ P+ P PPP + P
Sbjct: 128 ERS-LLQPLAHLSPAAFSSFLPESTACPYSYAAP--PPPVTCFP 168
>gi|13994335 Mix-like homeobox protein 1 [Homo sapiens]
Length = 232
Score = 64.7 bits (156), Expect = 6e-11
Identities = 41/91 (45%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 17 PSGTLPFASSMPSPVDASSADGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTHE 76
P P +S+ SP A S S RRKRT+FS QL LE F YP+I E
Sbjct: 60 PGPAPPPPASLGSPAPPKGAAAPSA--SQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRE 117
Query: 77 HLAWVTCLPEAKVQVWFQKRWAKIIKNRKSG 107
LA +T LPE+++QVWFQ R AK R+SG
Sbjct: 118 RLAALTLLPESRIQVWFQNRRAK--SRRQSG 146
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 63.5 bits (153), Expect = 1e-10
Identities = 53/143 (37%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 19 GTLPFASSMPSPVDASSADGGSGLG---SHRRKRTTFSKGQLLELERAFAAWPYPNISTH 75
G L +S P + S D L RR RTTF+ QL ELERAF YP+I T
Sbjct: 189 GILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTR 248
Query: 76 EHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILS------PGSECPQSSCSLP-----D 124
E LA L EA+VQVWF R A+ K + L PG P + +LP +
Sbjct: 249 EELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSE 308
Query: 125 TLQQPWD-PQMPGQPPPSSGTPQ 146
T QP PQ P + PQ
Sbjct: 309 TSYQPTSIPQAVSDPSSTVHRPQ 331
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 63.5 bits (153), Expect = 1e-10
Identities = 53/143 (37%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 19 GTLPFASSMPSPVDASSADGGSGLG---SHRRKRTTFSKGQLLELERAFAAWPYPNISTH 75
G L +S P + S D L RR RTTF+ QL ELERAF YP+I T
Sbjct: 190 GILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTR 249
Query: 76 EHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILS------PGSECPQSSCSLP-----D 124
E LA L EA+VQVWF R A+ K + L PG P + +LP +
Sbjct: 250 EELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSE 309
Query: 125 TLQQPWD-PQMPGQPPPSSGTPQ 146
T QP PQ P + PQ
Sbjct: 310 TSYQPTSIPQAVSDPSSTVHRPQ 332
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 63.5 bits (153), Expect = 1e-10
Identities = 53/143 (37%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 19 GTLPFASSMPSPVDASSADGGSGLG---SHRRKRTTFSKGQLLELERAFAAWPYPNISTH 75
G L +S P + S D L RR RTTF+ QL ELERAF YP+I T
Sbjct: 190 GILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTR 249
Query: 76 EHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILS------PGSECPQSSCSLP-----D 124
E LA L EA+VQVWF R A+ K + L PG P + +LP +
Sbjct: 250 EELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSE 309
Query: 125 TLQQPWD-PQMPGQPPPSSGTPQ 146
T QP PQ P + PQ
Sbjct: 310 TSYQPTSIPQAVSDPSSTVHRPQ 332
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 63.5 bits (153), Expect = 1e-10
Identities = 53/143 (37%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 19 GTLPFASSMPSPVDASSADGGSGLG---SHRRKRTTFSKGQLLELERAFAAWPYPNISTH 75
G L +S P + S D L RR RTTF+ QL ELERAF YP+I T
Sbjct: 190 GILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTR 249
Query: 76 EHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILS------PGSECPQSSCSLP-----D 124
E LA L EA+VQVWF R A+ K + L PG P + +LP +
Sbjct: 250 EELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSE 309
Query: 125 TLQQPWD-PQMPGQPPPSSGTPQ 146
T QP PQ P + PQ
Sbjct: 310 TSYQPTSIPQAVSDPSSTVHRPQ 332
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 63.5 bits (153), Expect = 1e-10
Identities = 53/143 (37%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 19 GTLPFASSMPSPVDASSADGGSGLG---SHRRKRTTFSKGQLLELERAFAAWPYPNISTH 75
G L +S P + S D L RR RTTF+ QL ELERAF YP+I T
Sbjct: 190 GILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTR 249
Query: 76 EHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILS------PGSECPQSSCSLP-----D 124
E LA L EA+VQVWF R A+ K + L PG P + +LP +
Sbjct: 250 EELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSE 309
Query: 125 TLQQPWD-PQMPGQPPPSSGTPQ 146
T QP PQ P + PQ
Sbjct: 310 TSYQPTSIPQAVSDPSSTVHRPQ 332
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 63.5 bits (153), Expect = 1e-10
Identities = 53/143 (37%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 19 GTLPFASSMPSPVDASSADGGSGLG---SHRRKRTTFSKGQLLELERAFAAWPYPNISTH 75
G L +S P + S D L RR RTTF+ QL ELERAF YP+I T
Sbjct: 190 GILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTR 249
Query: 76 EHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSGILS------PGSECPQSSCSLP-----D 124
E LA L EA+VQVWF R A+ K + L PG P + +LP +
Sbjct: 250 EELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSE 309
Query: 125 TLQQPWD-PQMPGQPPPSSGTPQ 146
T QP PQ P + PQ
Sbjct: 310 TSYQPTSIPQAVSDPSSTVHRPQ 332
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 63.2 bits (152), Expect = 2e-10
Identities = 54/166 (32%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 46 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNR- 104
RR+RTTF++ QL ELE FA YP++ E +A LPE++VQVWF+ R AK + R
Sbjct: 40 RRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQ 99
Query: 105 --KSGILSPGSECPQSSCSLPDTLQQPWDPQMPGQPPPSSGT-PQRTSVCRHSSCPAPGL 161
K PG + +P + P PS+ P + S P PG
Sbjct: 100 QQKQQQQPPGGQAK----------ARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGP 149
Query: 162 SPRQGWEGAKAVAPWGSAGASEVHPSLERATPQTSLGSLSDLIYAL 207
S V+ W A S + P +RA S SL+ YA+
Sbjct: 150 S-GSPTTAVATVSIWSPASESPL-PEAQRAGLVASGPSLTSAPYAM 193
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 62.0 bits (149), Expect = 4e-10
Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 46 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 105
RR+RTTF++ QL LE FA YP+I E +A LPE++VQVWF+ R AK + ++
Sbjct: 39 RRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 98
Query: 106 SGILSPGSECPQSSCSLPDTLQQPWDPQMPGQ---PPPSSGTPQRTSVCRHSSCPAPGLS 162
SG S P S P +++ + GQ P SS +S S+ PA +
Sbjct: 99 SG--SGTKSRPAKKKSSP--VRESSGSESSGQFTPPAVSSSASSSSSASSSSANPAAAAA 154
Query: 163 PRQGWEGAKAVAPWGSAGASEV 184
G A + + AS +
Sbjct: 155 AGLGGNPVAAASSLSTPAASSI 176
>gi|34365783 visual system homeobox 2 [Homo sapiens]
Length = 361
Score = 60.8 bits (146), Expect = 8e-10
Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 13 PLARPSGTLPFASSMPSPV-DASSAD---GGSGLGS-----HRRKRTTFSKGQLLELERA 63
PL R SG L + + S D SS+D S L RR RT F+ QL ELE+A
Sbjct: 107 PLGRASGPLDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKA 166
Query: 64 FAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 105
F YP++ E LA T LPE ++QVWFQ R AK K K
Sbjct: 167 FNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREK 208
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 60.8 bits (146), Expect = 8e-10
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 46 RRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRK 105
RR RTTF+ QL LER F YP+ E LA L EA+VQVWFQ R AK +N +
Sbjct: 95 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER 154
Query: 106 SGILSPGSECPQSSCSLPDTLQQPWDPQMPGQPPP----SSGTPQRTS 149
+ + + + +S ++QP P+ +P + +P R+S
Sbjct: 155 AMLANKNASLLKSYSGDVTAVEQPIVPRPAPRPTDYLSWGTASPYRSS 202
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 60.1 bits (144), Expect = 1e-09
Identities = 40/97 (41%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 28 PSPVDASSADGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEA 87
P+P A G +R RT F+ QL ELER+FA YP+I E LA L E+
Sbjct: 90 PNPSQAGQQQGQQ---KQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTES 146
Query: 88 KVQVWFQKRWAKIIKNRKS-------GILSPGSECPQ 117
+VQVWFQ R AK K +K+ G L P PQ
Sbjct: 147 RVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQ 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,057,212
Number of Sequences: 37866
Number of extensions: 640440
Number of successful extensions: 3797
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 193
Number of HSP's that attempted gapping in prelim test: 3251
Number of HSP's gapped (non-prelim): 719
length of query: 216
length of database: 18,247,518
effective HSP length: 98
effective length of query: 118
effective length of database: 14,536,650
effective search space: 1715324700
effective search space used: 1715324700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.