Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 194306569
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194306569 replication factor C 5 isoform 3 [Homo sapiens]
(255 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194306571 replication factor C 5 isoform 2 [Homo sapiens] 498 e-141
gi|194306569 replication factor C 5 isoform 3 [Homo sapiens] 498 e-141
gi|194306567 replication factor C 5 isoform 2 [Homo sapiens] 498 e-141
gi|6677723 replication factor C 5 isoform 1 [Homo sapiens] 498 e-141
gi|31563534 replication factor C 2 isoform 1 [Homo sapiens] 160 1e-39
gi|31881687 replication factor C 4 [Homo sapiens] 152 4e-37
gi|4506491 replication factor C 4 [Homo sapiens] 152 4e-37
gi|28882049 replication factor C 2 isoform 2 [Homo sapiens] 119 3e-27
gi|108773789 replication factor C 3 isoform 2 [Homo sapiens] 71 1e-12
gi|4506489 replication factor C 3 isoform 1 [Homo sapiens] 71 1e-12
gi|27501458 CTF18, chromosome transmission fidelity factor 18 ho... 39 0.006
gi|148612818 protein kinase, cGMP-dependent, type I isoform 1 [H... 31 0.92
gi|10835242 protein kinase, cGMP-dependent, type I isoform 2 [Ho... 31 0.92
gi|105990532 apolipoprotein B precursor [Homo sapiens] 31 1.2
gi|216548193 RAD54-like protein [Homo sapiens] 31 1.2
gi|216548186 RAD54-like protein [Homo sapiens] 31 1.2
gi|134304844 hepatic nuclear factor-1-alpha [Homo sapiens] 30 2.0
gi|47578107 delangin isoform B [Homo sapiens] 30 2.0
gi|47578105 delangin isoform A [Homo sapiens] 30 2.0
gi|4505541 USO1 homolog, vesicle docking protein [Homo sapiens] 30 2.7
gi|34787409 hypothetical protein LOC57148 [Homo sapiens] 30 2.7
gi|19923268 protein-kinase, interferon-inducible double stranded... 29 4.6
gi|157412263 cyclin M1 [Homo sapiens] 28 5.9
gi|41393547 neuroblastoma-amplified protein [Homo sapiens] 28 7.8
>gi|194306571 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 498 bits (1283), Expect = e-141
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 60
MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF
Sbjct: 65 MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 124
Query: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 120
TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL
Sbjct: 125 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 184
Query: 121 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 180
VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN
Sbjct: 185 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 244
Query: 181 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 240
ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL
Sbjct: 245 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 304
Query: 241 IAAFQVTRDLIVAEA 255
IAAFQVTRDLIVAEA
Sbjct: 305 IAAFQVTRDLIVAEA 319
>gi|194306569 replication factor C 5 isoform 3 [Homo sapiens]
Length = 255
Score = 498 bits (1283), Expect = e-141
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 60
MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF
Sbjct: 1 MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 60
Query: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 120
TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL
Sbjct: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 120
Query: 121 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 180
VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN
Sbjct: 121 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 180
Query: 181 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 240
ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL
Sbjct: 181 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 240
Query: 241 IAAFQVTRDLIVAEA 255
IAAFQVTRDLIVAEA
Sbjct: 241 IAAFQVTRDLIVAEA 255
>gi|194306567 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 498 bits (1283), Expect = e-141
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 60
MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF
Sbjct: 65 MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 124
Query: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 120
TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL
Sbjct: 125 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 184
Query: 121 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 180
VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN
Sbjct: 185 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 244
Query: 181 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 240
ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL
Sbjct: 245 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 304
Query: 241 IAAFQVTRDLIVAEA 255
IAAFQVTRDLIVAEA
Sbjct: 305 IAAFQVTRDLIVAEA 319
>gi|6677723 replication factor C 5 isoform 1 [Homo sapiens]
Length = 340
Score = 498 bits (1283), Expect = e-141
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 60
MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF
Sbjct: 86 MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 145
Query: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 120
TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL
Sbjct: 146 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 205
Query: 121 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 180
VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN
Sbjct: 206 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 265
Query: 181 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 240
ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL
Sbjct: 266 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 325
Query: 241 IAAFQVTRDLIVAEA 255
IAAFQVTRDLIVAEA
Sbjct: 326 IAAFQVTRDLIVAEA 340
>gi|31563534 replication factor C 2 isoform 1 [Homo sapiens]
Length = 354
Score = 160 bits (404), Expect = 1e-39
Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 2/242 (0%)
Query: 2 VLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKF 60
+LELNAS+DRGID++R I FA + KG K++ILDEAD+MT AQ ALRR +E +
Sbjct: 102 MLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIY 161
Query: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 120
++ TRF L CN KII +QSRC R+ LT ++ RL +V+E+E+V ++DG++A+
Sbjct: 162 SKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAI 221
Query: 121 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 180
+ + GDMR+ALN LQST FG + E V+ P + ++ +N + AY+
Sbjct: 222 IFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKI 281
Query: 181 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 240
+ L L G + DI+ I +++ + ++ +++ G N +Q++ L
Sbjct: 282 LAHLWHL-GYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGL 340
Query: 241 IA 242
+A
Sbjct: 341 LA 342
>gi|31881687 replication factor C 4 [Homo sapiens]
Length = 363
Score = 152 bits (383), Expect = 4e-37
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 10/250 (4%)
Query: 2 VLELNASDDRGIDIIRGPILSFASTRTIFKKG-------FKLVILDEADAMTQDAQNALR 54
VLELNASD+RGI ++R + +FA + FK+VILDEAD+MT AQ ALR
Sbjct: 105 VLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALR 164
Query: 55 RVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISE 114
R +EK ++ TRFCLICNY+S+II L SRC++FRF PL+ ++ RL + ++E V IS+
Sbjct: 165 RTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISD 224
Query: 115 DGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQ 172
+G+ LV +S GD+R+A+ LQS T + GK +TE+ + G I + +
Sbjct: 225 EGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSG 284
Query: 173 DFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTN 232
F + +L +G A ++ ++H V + + + K+A+++ L+ G +
Sbjct: 285 SFDKLEAVVKDLID-EGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGAD 343
Query: 233 EKIQLSSLIA 242
E +QL SL A
Sbjct: 344 EHLQLISLCA 353
>gi|4506491 replication factor C 4 [Homo sapiens]
Length = 363
Score = 152 bits (383), Expect = 4e-37
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 10/250 (4%)
Query: 2 VLELNASDDRGIDIIRGPILSFASTRTIFKKG-------FKLVILDEADAMTQDAQNALR 54
VLELNASD+RGI ++R + +FA + FK+VILDEAD+MT AQ ALR
Sbjct: 105 VLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALR 164
Query: 55 RVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISE 114
R +EK ++ TRFCLICNY+S+II L SRC++FRF PL+ ++ RL + ++E V IS+
Sbjct: 165 RTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISD 224
Query: 115 DGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQ 172
+G+ LV +S GD+R+A+ LQS T + GK +TE+ + G I + +
Sbjct: 225 EGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSG 284
Query: 173 DFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTN 232
F + +L +G A ++ ++H V + + + K+A+++ L+ G +
Sbjct: 285 SFDKLEAVVKDLID-EGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGAD 343
Query: 233 EKIQLSSLIA 242
E +QL SL A
Sbjct: 344 EHLQLISLCA 353
>gi|28882049 replication factor C 2 isoform 2 [Homo sapiens]
Length = 320
Score = 119 bits (297), Expect = 3e-27
Identities = 65/200 (32%), Positives = 110/200 (55%), Gaps = 1/200 (0%)
Query: 43 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 102
D+MT AQ ALRR +E +++ TRF L CN KII +QSRC R+ LT ++ RL
Sbjct: 110 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 169
Query: 103 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDI 162
+V+E+E+V ++DG++A++ + GDMR+ALN LQST FG + E V+ P +
Sbjct: 170 NVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLV 229
Query: 163 ANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMAD 222
++ +N + AY+ + L L G + DI+ I +++ + ++
Sbjct: 230 KEMIQHCVNANIDEAYKILAHLWHL-GYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGY 288
Query: 223 IEYRLSVGTNEKIQLSSLIA 242
+++ G N +Q++ L+A
Sbjct: 289 THMKIAEGVNSLLQMAGLLA 308
>gi|108773789 replication factor C 3 isoform 2 [Homo sapiens]
Length = 305
Score = 70.9 bits (172), Expect = 1e-12
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 5/135 (3%)
Query: 3 LELNASDDRGID--IIRGPILSFASTR---TIFKKGFKLVILDEADAMTQDAQNALRRVI 57
LE+N SD D +I+ + + A ++ T ++ FK+V+L E D +T+DAQ+ALRR +
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 58 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 117
EK+ R L CN SK+IP ++SRC R + E + L V ++E +++
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLA 212
Query: 118 KALVTLSSGDMRRAL 132
L S ++R+AL
Sbjct: 213 HRLAEKSCRNLRKAL 227
>gi|4506489 replication factor C 3 isoform 1 [Homo sapiens]
Length = 356
Score = 70.9 bits (172), Expect = 1e-12
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 5/135 (3%)
Query: 3 LELNASDDRGID--IIRGPILSFASTR---TIFKKGFKLVILDEADAMTQDAQNALRRVI 57
LE+N SD D +I+ + + A ++ T ++ FK+V+L E D +T+DAQ+ALRR +
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 58 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 117
EK+ R L CN SK+IP ++SRC R + E + L V ++E +++
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLA 212
Query: 118 KALVTLSSGDMRRAL 132
L S ++R+AL
Sbjct: 213 HRLAEKSCRNLRKAL 227
>gi|27501458 CTF18, chromosome transmission fidelity factor 18
homolog [Homo sapiens]
Length = 975
Score = 38.5 bits (88), Expect = 0.006
Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 28/163 (17%)
Query: 2 VLELNASDDRGIDIIRGPILSFASTRTIFKKGFK--LVILDEADAMTQDAQNALRRVIEK 59
V+E+NASDDR ++ R I + ++ G K +++DE D A N L ++ +
Sbjct: 395 VVEMNASDDRSPEVFRTRIEAATQMESVLGAGGKPNCLVIDEIDGAPVAAINVLLSILNR 454
Query: 60 --------------------------FTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 93
C+ + + + L+ + F P
Sbjct: 455 KGPQEVGPQGPAVPSGGGRRRRAEGGLLMRPIICICNDQFAPSLRQLKQQAFLLHFPPTL 514
Query: 94 PELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQ 136
P +V RL+ V + + + AL + D+R +N LQ
Sbjct: 515 PSRLVQRLQEVSLRQGMRADPGVLAALCEKTDNDIRACINTLQ 557
>gi|148612818 protein kinase, cGMP-dependent, type I isoform 1 [Homo
sapiens]
Length = 671
Score = 31.2 bits (69), Expect = 0.92
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 27/127 (21%)
Query: 98 VPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHP 157
V L +V+E+ KV+++++G+K L T+ G + L IL Y CT
Sbjct: 136 VGSLVYVMEDGKVEVTKEGVK-LCTMGPGKVFGELAIL---------------YNCTRTA 179
Query: 158 LKSDIANILDWMLN-QDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHL 216
+ N+ W ++ Q F T + GL H TE F+ V S+ +
Sbjct: 180 TVKTLVNVKLWAIDRQCFQT-------IMMRTGLIKH---TEYMEFLKSVPTFQSLPEEI 229
Query: 217 LTKMADI 223
L+K+AD+
Sbjct: 230 LSKLADV 236
>gi|10835242 protein kinase, cGMP-dependent, type I isoform 2 [Homo
sapiens]
Length = 686
Score = 31.2 bits (69), Expect = 0.92
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 27/127 (21%)
Query: 98 VPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHP 157
V L +V+E+ KV+++++G+K L T+ G + L IL Y CT
Sbjct: 151 VGSLVYVMEDGKVEVTKEGVK-LCTMGPGKVFGELAIL---------------YNCTRTA 194
Query: 158 LKSDIANILDWMLN-QDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHL 216
+ N+ W ++ Q F T + GL H TE F+ V S+ +
Sbjct: 195 TVKTLVNVKLWAIDRQCFQT-------IMMRTGLIKH---TEYMEFLKSVPTFQSLPEEI 244
Query: 217 LTKMADI 223
L+K+AD+
Sbjct: 245 LSKLADV 251
>gi|105990532 apolipoprotein B precursor [Homo sapiens]
Length = 4563
Score = 30.8 bits (68), Expect = 1.2
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 108 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILD 167
+K I+E+ ++ + + + L+ LQ+ + F + +++ H LK IANI+D
Sbjct: 2147 KKYRITENDIQIALDDAKINFNEKLSQLQTYMIQFDQYIKDSYDL---HDLKIAIANIID 2203
Query: 168 WMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDF-PSSVRIHLLTKMADIEYR 226
++ + + + +K +HD+ HLF+ +DF S + D +Y+
Sbjct: 2204 EIIEKLKSLDEHYHIRVNLVK--TIHDL----HLFIENIDFNKSGSSTASWIQNVDTKYQ 2257
Query: 227 LSVGTNEKIQ 236
+ + EK+Q
Sbjct: 2258 IRIQIQEKLQ 2267
>gi|216548193 RAD54-like protein [Homo sapiens]
Length = 747
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 30 FKKGFKLVILDEADAMTQDAQNAL-RRVIEKFTENTRFCLI---CNYLSKIIPALQSRCT 85
FKK F+L IL DA +A L + + T CLI + LSK +P +
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 86 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSS 125
R PL EL L E++ + + +L +++S
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITS 452
>gi|216548186 RAD54-like protein [Homo sapiens]
Length = 747
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 30 FKKGFKLVILDEADAMTQDAQNAL-RRVIEKFTENTRFCLI---CNYLSKIIPALQSRCT 85
FKK F+L IL DA +A L + + T CLI + LSK +P +
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 86 RFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSS 125
R PL EL L E++ + + +L +++S
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITS 452
>gi|134304844 hepatic nuclear factor-1-alpha [Homo sapiens]
Length = 631
Score = 30.0 bits (66), Expect = 2.0
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 24/139 (17%)
Query: 54 RRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELM---VPRLEHVVEEEKV 110
R V ++FT + LI +P + R RF++GP + +++ R ++ +EE+
Sbjct: 171 REVAQQFTHAGQGGLIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERE 230
Query: 111 DISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWML 170
+ E+ +A ++R ++ Q+ + VTE VY +W
Sbjct: 231 TLVEECNRAEC------IQRGVSPSQAQGLGSNLVTEVRVY---------------NWFA 269
Query: 171 NQDFTTAYRNITELKTLKG 189
N+ A+R+ + T G
Sbjct: 270 NRRKEEAFRHKLAMDTYSG 288
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 30.0 bits (66), Expect = 2.0
Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 39/238 (16%)
Query: 8 SDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFC 67
SD++G++ G +++ +T +F K M + A + K + F
Sbjct: 1992 SDNKGVN--SGRLVACITTLFLFSK-------IRPQLMVKHAMTMQPYLTTKCSTQNDFM 2042
Query: 68 LICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGD 127
+ICN ++KI+ EL+VP +EH E I ED MK ++
Sbjct: 2043 VICN-VAKIL-----------------ELVVPLMEHPSETFLATIEEDLMKLIIKYGMTV 2084
Query: 128 MRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTL 187
++ ++ L KVT+ + + L +D N T L T
Sbjct: 2085 VQHCVSCL---GAVVNKVTQNFKFVWACFNRYYGAISKLKSQHQED-----PNNTSLLTN 2136
Query: 188 KGLALHDILTEIHLFVH----RVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLI 241
K L + T L H DF + ++++ K+ ++ + ++E++Q ++I
Sbjct: 2137 KPALLRSLFTVGALCRHFDFDLEDFKGNSKVNIKDKVLELLMYFTKHSDEEVQTKAII 2194
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 30.0 bits (66), Expect = 2.0
Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 39/238 (16%)
Query: 8 SDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFC 67
SD++G++ G +++ +T +F K M + A + K + F
Sbjct: 1992 SDNKGVN--SGRLVACITTLFLFSK-------IRPQLMVKHAMTMQPYLTTKCSTQNDFM 2042
Query: 68 LICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGD 127
+ICN ++KI+ EL+VP +EH E I ED MK ++
Sbjct: 2043 VICN-VAKIL-----------------ELVVPLMEHPSETFLATIEEDLMKLIIKYGMTV 2084
Query: 128 MRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTL 187
++ ++ L KVT+ + + L +D N T L T
Sbjct: 2085 VQHCVSCL---GAVVNKVTQNFKFVWACFNRYYGAISKLKSQHQED-----PNNTSLLTN 2136
Query: 188 KGLALHDILTEIHLFVH----RVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLI 241
K L + T L H DF + ++++ K+ ++ + ++E++Q ++I
Sbjct: 2137 KPALLRSLFTVGALCRHFDFDLEDFKGNSKVNIKDKVLELLMYFTKHSDEEVQTKAII 2194
>gi|4505541 USO1 homolog, vesicle docking protein [Homo sapiens]
Length = 962
Score = 29.6 bits (65), Expect = 2.7
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 158 LKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLL 217
LK ++A + + +Q IT+L+T K ++L + F V+ +
Sbjct: 790 LKQELATLKSQLNSQSV-----EITKLQTEK----QELLQKTEAFAKSVEVQGETETIIA 840
Query: 218 TKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLI 251
TK D+E RLS E +L + I A R I
Sbjct: 841 TKTTDVEGRLSALLQETKELKNEIKALSEERTAI 874
>gi|34787409 hypothetical protein LOC57148 [Homo sapiens]
Length = 1494
Score = 29.6 bits (65), Expect = 2.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 74 SKIIPALQSRCTRFRFGPLTPELMVP 99
SK+I AL SR RF +GP P VP
Sbjct: 238 SKVICALTSRLLRFTYGPSFPAFKVP 263
>gi|19923268 protein-kinase, interferon-inducible double stranded
RNA dependent inhibitor, repressor of (P58 repressor)
[Homo sapiens]
Length = 761
Score = 28.9 bits (63), Expect = 4.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 96 LMVPRLEHVVEEEKVDISEDGMKALVTLS 124
L VP +EH+++E K SE +KAL LS
Sbjct: 578 LSVPTVEHIIQELKDIFSEQHLKALKCLS 606
>gi|157412263 cyclin M1 [Homo sapiens]
Length = 951
Score = 28.5 bits (62), Expect = 5.9
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 157 PLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILT--EIHLFVHRVDFPSSVRI 214
P+ + +LDW L Q+ +T Y L+TL+ + L E+++ ++ + V
Sbjct: 371 PVCYPLGRLLDWALRQEISTFYTREKLLETLRAADPYSDLVKEELNIIQGALELRTKVVE 430
Query: 215 HLLTKMAD 222
+LT + D
Sbjct: 431 EVLTPLGD 438
>gi|41393547 neuroblastoma-amplified protein [Homo sapiens]
Length = 2371
Score = 28.1 bits (61), Expect = 7.8
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 80 LQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKA-LVTLSSGDMRRALNILQST 138
L + C+ ++ + MVP L H E++ ++ + +K LVTL+ GD++ L I Q +
Sbjct: 918 LMNSCSEDKYVTSAYQWMVPFL-HRCEKQSPGVANELLKEYLVTLAKGDLKFPLKIFQHS 976
Query: 139 NMAFGK-----------VTEETVYTC 153
+ + E +YTC
Sbjct: 977 KPDLQQKIIPDQDQLMAIALECIYTC 1002
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,897,217
Number of Sequences: 37866
Number of extensions: 301712
Number of successful extensions: 750
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 27
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.