Guide to the Human Genome
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Search of human proteins with 193788629

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|193788629 testis expressed 264 [Homo sapiens]
         (313 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|193788629 testis expressed 264 [Homo sapiens]                      639   0.0  
gi|7706708 testis expressed 264 [Homo sapiens]                        639   0.0  
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]           33   0.33 
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]           33   0.33 
gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo...    32   0.56 
gi|30795231 brain abundant, membrane attached signal protein 1 [...    32   0.95 
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot...    32   0.95 
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot...    32   0.95 
gi|195947361 histidine acid phosphatase domain containing 2A iso...    32   0.95 
gi|195947359 histidine acid phosphatase domain containing 2A iso...    32   0.95 
gi|66932992 histidine acid phosphatase domain containing 2A isof...    32   0.95 
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi...    32   0.95 
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap...    32   0.95 
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot...    31   1.2  
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot...    31   1.2  
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot...    31   1.2  
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote...    31   1.2  
gi|208431815 protein tyrosine phosphatase, receptor type, K isof...    31   1.6  
gi|18860902 protein tyrosine phosphatase, receptor type, K isofo...    31   1.6  
gi|4505379 nuclear factor erythroid 2-like 1 [Homo sapiens]            31   1.6  
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]       31   1.6  
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              31   1.6  
gi|119220598 apolipoprotein B48 receptor [Homo sapiens]                31   1.6  
gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribo...    30   2.1  
gi|224586880 Ras protein-specific guanine nucleotide-releasing f...    30   2.8  
gi|24797099 Ras protein-specific guanine nucleotide-releasing fa...    30   2.8  
gi|156104903 myomesin 2 [Homo sapiens]                                 30   2.8  
gi|122937243 dual specificity phosphatase 27 [Homo sapiens]            29   4.7  
gi|24797101 Ras protein-specific guanine nucleotide-releasing fa...    29   4.7  
gi|17978466 cyclin T1 [Homo sapiens]                                   29   4.7  

>gi|193788629 testis expressed 264 [Homo sapiens]
          Length = 313

 Score =  639 bits (1648), Expect = 0.0
 Identities = 313/313 (100%), Positives = 313/313 (100%)

Query: 1   MSDLLLLGLIGGLTLLLLLTLLAFAGYSGLLAGVEVSAGSPPIRNVTVAYKFHMGLYGET 60
           MSDLLLLGLIGGLTLLLLLTLLAFAGYSGLLAGVEVSAGSPPIRNVTVAYKFHMGLYGET
Sbjct: 1   MSDLLLLGLIGGLTLLLLLTLLAFAGYSGLLAGVEVSAGSPPIRNVTVAYKFHMGLYGET 60

Query: 61  GRLFTESCSISPKLRSIAVYYDNPHMVPPDKCRCAVGSILSEGEESPSPELIDLYQKFGF 120
           GRLFTESCSISPKLRSIAVYYDNPHMVPPDKCRCAVGSILSEGEESPSPELIDLYQKFGF
Sbjct: 61  GRLFTESCSISPKLRSIAVYYDNPHMVPPDKCRCAVGSILSEGEESPSPELIDLYQKFGF 120

Query: 121 KVFSFPAPSHVVTATFPYTTILSIWLATRRVHPALDTYIKERKLCAYPRLEIYQEDQIHF 180
           KVFSFPAPSHVVTATFPYTTILSIWLATRRVHPALDTYIKERKLCAYPRLEIYQEDQIHF
Sbjct: 121 KVFSFPAPSHVVTATFPYTTILSIWLATRRVHPALDTYIKERKLCAYPRLEIYQEDQIHF 180

Query: 181 MCPLARQGDFYVPEMKETEWKWRGLVEAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSA 240
           MCPLARQGDFYVPEMKETEWKWRGLVEAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSA
Sbjct: 181 MCPLARQGDFYVPEMKETEWKWRGLVEAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSA 240

Query: 241 ATLSPGASSRGWDDGDTRSEHSYSESGASGSSFEELDLEGEGPLGESRLDPGTEPLGTTK 300
           ATLSPGASSRGWDDGDTRSEHSYSESGASGSSFEELDLEGEGPLGESRLDPGTEPLGTTK
Sbjct: 241 ATLSPGASSRGWDDGDTRSEHSYSESGASGSSFEELDLEGEGPLGESRLDPGTEPLGTTK 300

Query: 301 WLWEPTAPEKGKE 313
           WLWEPTAPEKGKE
Sbjct: 301 WLWEPTAPEKGKE 313


>gi|7706708 testis expressed 264 [Homo sapiens]
          Length = 313

 Score =  639 bits (1648), Expect = 0.0
 Identities = 313/313 (100%), Positives = 313/313 (100%)

Query: 1   MSDLLLLGLIGGLTLLLLLTLLAFAGYSGLLAGVEVSAGSPPIRNVTVAYKFHMGLYGET 60
           MSDLLLLGLIGGLTLLLLLTLLAFAGYSGLLAGVEVSAGSPPIRNVTVAYKFHMGLYGET
Sbjct: 1   MSDLLLLGLIGGLTLLLLLTLLAFAGYSGLLAGVEVSAGSPPIRNVTVAYKFHMGLYGET 60

Query: 61  GRLFTESCSISPKLRSIAVYYDNPHMVPPDKCRCAVGSILSEGEESPSPELIDLYQKFGF 120
           GRLFTESCSISPKLRSIAVYYDNPHMVPPDKCRCAVGSILSEGEESPSPELIDLYQKFGF
Sbjct: 61  GRLFTESCSISPKLRSIAVYYDNPHMVPPDKCRCAVGSILSEGEESPSPELIDLYQKFGF 120

Query: 121 KVFSFPAPSHVVTATFPYTTILSIWLATRRVHPALDTYIKERKLCAYPRLEIYQEDQIHF 180
           KVFSFPAPSHVVTATFPYTTILSIWLATRRVHPALDTYIKERKLCAYPRLEIYQEDQIHF
Sbjct: 121 KVFSFPAPSHVVTATFPYTTILSIWLATRRVHPALDTYIKERKLCAYPRLEIYQEDQIHF 180

Query: 181 MCPLARQGDFYVPEMKETEWKWRGLVEAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSA 240
           MCPLARQGDFYVPEMKETEWKWRGLVEAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSA
Sbjct: 181 MCPLARQGDFYVPEMKETEWKWRGLVEAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSA 240

Query: 241 ATLSPGASSRGWDDGDTRSEHSYSESGASGSSFEELDLEGEGPLGESRLDPGTEPLGTTK 300
           ATLSPGASSRGWDDGDTRSEHSYSESGASGSSFEELDLEGEGPLGESRLDPGTEPLGTTK
Sbjct: 241 ATLSPGASSRGWDDGDTRSEHSYSESGASGSSFEELDLEGEGPLGESRLDPGTEPLGTTK 300

Query: 301 WLWEPTAPEKGKE 313
           WLWEPTAPEKGKE
Sbjct: 301 WLWEPTAPEKGKE 313


>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
          Length = 1938

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 12/67 (17%)

Query: 234 GSRETSAATLSP-----GASSRGWDDGDTRSEHSYSESGASGSSFEELDLEGEGPLGESR 288
           G++ETS A+L       G  S+G  +GD  S H+   +G SG S         GP   SR
Sbjct: 643 GAKETSHASLPQPEPPGGGGSKGNKNGDNNSNHNGEGNGQSGHS-------AAGPGFTSR 695

Query: 289 LDPGTEP 295
            +P   P
Sbjct: 696 TEPSKSP 702


>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
          Length = 1960

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 12/67 (17%)

Query: 234 GSRETSAATLSP-----GASSRGWDDGDTRSEHSYSESGASGSSFEELDLEGEGPLGESR 288
           G++ETS A+L       G  S+G  +GD  S H+   +G SG S         GP   SR
Sbjct: 643 GAKETSHASLPQPEPPGGGGSKGNKNGDNNSNHNGEGNGQSGHS-------AAGPGFTSR 695

Query: 289 LDPGTEP 295
            +P   P
Sbjct: 696 TEPSKSP 702


>gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo
           sapiens]
          Length = 674

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 17/107 (15%)

Query: 211 TQVDGTGADTMSDTSSVSLEVSPGSRETSAATLSPGASSRGW-----DDGDTRSEHSYSE 265
           T V   G +    T     E S G+R+TS +  S G+  R W     +  + + E ++ E
Sbjct: 219 TWVSCPGEEENQATEDKRTERSKGARKTSVSPRSSGSDPRSWEYRSGEASEEKEEKAHKE 278

Query: 266 SGASGSSFEELDLEGEGPLGESRLDPGTEPLGTTKWLWEPTAPEKGK 312
           +G           +GE   G     P   P     W  +P+  E+G+
Sbjct: 279 TG-----------KGEAAPGPQSSAPAQRP-QLKSWWCQPSDEEEGE 313


>gi|30795231 brain abundant, membrane attached signal protein 1
           [Homo sapiens]
          Length = 227

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 208 AIDTQVDGTGADTMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDDGDTRSEHSYSESG 267
           A +T+ DG  A   SD+   S E +P S+ET AAT +P ++ +      +  E    E+ 
Sbjct: 159 AQETKSDGAPA---SDSKPGSSEAAPSSKETPAATEAPSSTPKAQGPAASAEEPKPVEAP 215

Query: 268 ASGS 271
           A+ S
Sbjct: 216 AANS 219


>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 6 [Homo sapiens]
          Length = 305

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 196 KETEWKWRGLVEAIDTQVDGTGAD-TMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDD 254
           KE+  K RG  +    +   +G+  T S +SS S   S  S  +S+ + S  ASSR    
Sbjct: 50  KESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109

Query: 255 GDTRSEHSYSESGASGSS 272
             +RS  S S SG+   S
Sbjct: 110 STSRSSSSSSSSGSPSPS 127


>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 2 [Homo sapiens]
          Length = 305

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 196 KETEWKWRGLVEAIDTQVDGTGAD-TMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDD 254
           KE+  K RG  +    +   +G+  T S +SS S   S  S  +S+ + S  ASSR    
Sbjct: 50  KESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109

Query: 255 GDTRSEHSYSESGASGSS 272
             +RS  S S SG+   S
Sbjct: 110 STSRSSSSSSSSGSPSPS 127


>gi|195947361 histidine acid phosphatase domain containing 2A isoform
            2 [Homo sapiens]
          Length = 1408

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 233  PGSRETSAATLSP----GASSRGWDDGDTRSEHSYSE-------SGASGSSFEELDLEGE 281
            P S  +SA   SP    G S  G+ D  + + H   E           GS  +EL +EGE
Sbjct: 1146 PSSTVSSAGPSSPTTVDGNSQFGFSDQPSLNSHVAEEHQGLGLLQETPGSGAQELSIEGE 1205

Query: 282  GPLGESRLDPGTEPLGTTKWLWEPTAP 308
              L E    P   P+ T++   E + P
Sbjct: 1206 QELFEPNQSPQVPPMETSQPYEEVSQP 1232


>gi|195947359 histidine acid phosphatase domain containing 2A isoform
            5 [Homo sapiens]
          Length = 1433

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 233  PGSRETSAATLSP----GASSRGWDDGDTRSEHSYSE-------SGASGSSFEELDLEGE 281
            P S  +SA   SP    G S  G+ D  + + H   E           GS  +EL +EGE
Sbjct: 1171 PSSTVSSAGPSSPTTVDGNSQFGFSDQPSLNSHVAEEHQGLGLLQETPGSGAQELSIEGE 1230

Query: 282  GPLGESRLDPGTEPLGTTKWLWEPTAP 308
              L E    P   P+ T++   E + P
Sbjct: 1231 QELFEPNQSPQVPPMETSQPYEEVSQP 1257


>gi|66932992 histidine acid phosphatase domain containing 2A isoform 2
            [Homo sapiens]
          Length = 1408

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 233  PGSRETSAATLSP----GASSRGWDDGDTRSEHSYSE-------SGASGSSFEELDLEGE 281
            P S  +SA   SP    G S  G+ D  + + H   E           GS  +EL +EGE
Sbjct: 1146 PSSTVSSAGPSSPTTVDGNSQFGFSDQPSLNSHVAEEHQGLGLLQETPGSGAQELSIEGE 1205

Query: 282  GPLGESRLDPGTEPLGTTKWLWEPTAP 308
              L E    P   P+ T++   E + P
Sbjct: 1206 QELFEPNQSPQVPPMETSQPYEEVSQP 1232


>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 196 KETEWKWRGLVEAIDTQVDGTGAD-TMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDD 254
           KE+  K RG  +    +   +G+  T S +SS S   S  S  +S+ + S  ASSR    
Sbjct: 50  KESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109

Query: 255 GDTRSEHSYSESGASGSS 272
             +RS  S S SG+   S
Sbjct: 110 STSRSSSSSSSSGSPSPS 127


>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 196 KETEWKWRGLVEAIDTQVDGTGAD-TMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDD 254
           KE+  K RG  +    +   +G+  T S +SS S   S  S  +S+ + S  ASSR    
Sbjct: 50  KESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109

Query: 255 GDTRSEHSYSESGASGSS 272
             +RS  S S SG+   S
Sbjct: 110 STSRSSSSSSSSGSPSPS 127


>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 196 KETEWKWRGLVEAIDTQVDGTGAD-TMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDD 254
           KE+  K RG  +        +G+  T S +SS S   S  S  +S+ + S  ASSR    
Sbjct: 50  KESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109

Query: 255 GDTRSEHSYSESGASGSS 272
             +RS  S S SG+   S
Sbjct: 110 STSRSSSSSSSSGSPSPS 127


>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 196 KETEWKWRGLVEAIDTQVDGTGAD-TMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDD 254
           KE+  K RG  +        +G+  T S +SS S   S  S  +S+ + S  ASSR    
Sbjct: 50  KESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109

Query: 255 GDTRSEHSYSESGASGSS 272
             +RS  S S SG+   S
Sbjct: 110 STSRSSSSSSSSGSPSPS 127


>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 196 KETEWKWRGLVEAIDTQVDGTGAD-TMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDD 254
           KE+  K RG  +        +G+  T S +SS S   S  S  +S+ + S  ASSR    
Sbjct: 50  KESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109

Query: 255 GDTRSEHSYSESGASGSS 272
             +RS  S S SG+   S
Sbjct: 110 STSRSSSSSSSSGSPSPS 127


>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 3 [Homo sapiens]
          Length = 305

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 196 KETEWKWRGLVEAIDTQVDGTGAD-TMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDD 254
           KE+  K RG  +        +G+  T S +SS S   S  S  +S+ + S  ASSR    
Sbjct: 50  KESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109

Query: 255 GDTRSEHSYSESGASGSS 272
             +RS  S S SG+   S
Sbjct: 110 STSRSSSSSSSSGSPSPS 127


>gi|208431815 protein tyrosine phosphatase, receptor type, K isoform a
            [Homo sapiens]
          Length = 1446

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 60   TGRLFTESCSIS--PKLRSIAVYYDNPHMVPPDKCRCAVGSILSEGEESPSPELIDLY-Q 116
            T RL  E CSI+  P+      + D   M+PPD+C   + +I  E     +  L+D Y Q
Sbjct: 1191 TPRLQAEDCSIACLPRNHDKNRFMD---MLPPDRCLPFLITIDGESSNYINAALMDSYRQ 1247

Query: 117  KFGFKVFSFPAPSHV 131
               F V  +P P+ V
Sbjct: 1248 PAAFIVTQYPLPNTV 1262


>gi|18860902 protein tyrosine phosphatase, receptor type, K isoform b
            [Homo sapiens]
          Length = 1440

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 60   TGRLFTESCSIS--PKLRSIAVYYDNPHMVPPDKCRCAVGSILSEGEESPSPELIDLY-Q 116
            T RL  E CSI+  P+      + D   M+PPD+C   + +I  E     +  L+D Y Q
Sbjct: 1185 TPRLQAEDCSIACLPRNHDKNRFMD---MLPPDRCLPFLITIDGESSNYINAALMDSYRQ 1241

Query: 117  KFGFKVFSFPAPSHV 131
               F V  +P P+ V
Sbjct: 1242 PAAFIVTQYPLPNTV 1256


>gi|4505379 nuclear factor erythroid 2-like 1 [Homo sapiens]
          Length = 772

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 216 TGADTMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDDGDTRSEHSYSESGASG--SSF 273
           +G    S  S  SL  S GS  +S+++ S  +S+       + +  S+SE GA G  S  
Sbjct: 477 SGLSLDSSHSPSSLSSSEGSSSSSSSSSSSSSSA------SSSASSSFSEEGAVGYSSDS 530

Query: 274 EELDL-EGEGPLG 285
           E LDL E EG +G
Sbjct: 531 ETLDLEEAEGAVG 543


>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
          Length = 1374

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 217 GADTMSDTSSVSLEVSPGSRE--TSAATLSPGASSRGWDDG-DTRSEHS------YSESG 267
           G     D+  +    S G  E  + +AT   G   R  D G DT +  S       ++ G
Sbjct: 898 GTPDSLDSLDIPSSASDGGYEVFSPSATGPSGGQPRALDSGYDTENYESPEFVLKEAQEG 957

Query: 268 ASGSSFEELDLEGEGPLGESRL 289
               +F EL  EGEGP  E+RL
Sbjct: 958 CEPQAFAELASEGEGPGPETRL 979


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 4/123 (3%)

Query: 194  EMKETEWKWRGLVEAIDTQVDGTG-ADTMSDTSSVSLEVSPGSRETSAATLSPGASSRGW 252
            E+ E E +  G+ E  +T   G+G  D +   ++   +  PG  + +    +P A     
Sbjct: 1786 ELGEAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQ 1845

Query: 253  --DDGDTRSEHSYSESGASGSSFEELDLEGEGPLGESRLDPGTEPLGTTKWLWEPTAPEK 310
               +G    E       A G +  E + + E P  E    P +E + T +  WE     +
Sbjct: 1846 PESEGVEAPEAEGDAQEAEGEAQPESE-DVEAPEAEGEAQPESEDVETPEAEWEVQPESE 1904

Query: 311  GKE 313
            G E
Sbjct: 1905 GAE 1907


>gi|119220598 apolipoprotein B48 receptor [Homo sapiens]
          Length = 1088

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 197 ETEWKWRGLVEAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSAA-TLSPGASSRGWDDG 255
           E+EW W G       + +G         +  + E+  G RE  A  T  PGA   G  + 
Sbjct: 197 ESEWTWHG-------ETEGKAGAVGPKAAGDNREMEQGVREADAGETEEPGAEGAGKGEE 249

Query: 256 DTRSEHSYSESGASGSSFEELDLEGEGPLG--ESRLDPGTE 294
               E +   + A G+     + E  G LG  E+R  PG E
Sbjct: 250 VVVVEKACESTRAWGTWGPGAEPEDWGILGREEARTTPGRE 290


>gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribose
           polymerase [Homo sapiens]
          Length = 1327

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 10/91 (10%)

Query: 213 VDGTGADTMSDT--SSVSLEVSPGSRETSAATLSPGASSRGWDDGDTRSEHSYSESGAS- 269
           VDGT   + + T  +  +  V P    +SAA ++P  +  G ++  + S    S S +S 
Sbjct: 84  VDGTSCCSTTSTICTVAAAPVVPAVSTSSAAGVAPNPAGSGSNNSPSSSSSPTSSSSSSP 143

Query: 270 ---GSSFEE----LDLEGEGPLGESRLDPGT 293
              GSS  E      +    PLG     PGT
Sbjct: 144 SSPGSSLAESPEAAGVSSTAPLGPGAAGPGT 174


>gi|224586880 Ras protein-specific guanine nucleotide-releasing
           factor 1 isoform 3 [Homo sapiens]
          Length = 1257

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 207 EAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDDGDTRSEHSYSES 266
           +A+D       ++  +   S     S  + +TS   +S   +++  D+GDT  E     S
Sbjct: 752 KALDLAALSCNSNGYTSMYSAMSPFSKATLDTSKLYVSSSFTNKIPDEGDTTPEKPEDPS 811

Query: 267 GASGSSFEELDLEGEGPLGESRLDPGTEPLGTTKWLWEPTAPEKGK 312
             S  S  E+ +  E  + +++ D G      TK    PT P+  K
Sbjct: 812 ALSKQS-SEVSMREESDIDQNQSDDGDTETSPTK---SPTTPKSVK 853


>gi|24797099 Ras protein-specific guanine nucleotide-releasing
           factor 1 isoform 1 [Homo sapiens]
          Length = 1273

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 207 EAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDDGDTRSEHSYSES 266
           +A+D       ++  +   S     S  + +TS   +S   +++  D+GDT  E     S
Sbjct: 768 KALDLAALSCNSNGYTSMYSAMSPFSKATLDTSKLYVSSSFTNKIPDEGDTTPEKPEDPS 827

Query: 267 GASGSSFEELDLEGEGPLGESRLDPGTEPLGTTKWLWEPTAPEKGK 312
             S  S  E+ +  E  + +++ D G      TK    PT P+  K
Sbjct: 828 ALSKQS-SEVSMREESDIDQNQSDDGDTETSPTK---SPTTPKSVK 869


>gi|156104903 myomesin 2 [Homo sapiens]
          Length = 1465

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 213 VDGTGADTMSDTSS-VSLEVSPGSRETSAATLSPGASSRGWD--DGDTRSEHSYSESGAS 269
           V+  G    SDTS  V +E  PG++E SA     G    G+D  +    S+ ++ +S   
Sbjct: 890 VNANGVGKPSDTSEPVLVEARPGTKEISAGVDEQGNIYLGFDCQEMTDASQFTWCKSYEE 949

Query: 270 GSSFEELDLEGEGPLGESRL-DPGTEPLGT 298
            S  E   +E  G   +  L +P  E LGT
Sbjct: 950 ISDDERFKIETVGDHSKLYLKNPDKEDLGT 979


>gi|122937243 dual specificity phosphatase 27 [Homo sapiens]
          Length = 1158

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 16/84 (19%)

Query: 220  TMSDTSSVSLEVSP-----------GSRETSAATLSPG-ASSRGWDDGDTRSEHSYSESG 267
            T ++TSS S E SP             RE S     P  A SR W+D +  S+  +SE G
Sbjct: 1025 TYNETSS-SREESPEPYFFRRTPESSEREESPEPQRPNWARSRDWEDVEESSKSDFSEFG 1083

Query: 268  AS---GSSFEELDLEGEGPLGESR 288
            A      SF   + EGE    E+R
Sbjct: 1084 AKRKFTQSFMRSEEEGEKERTENR 1107


>gi|24797101 Ras protein-specific guanine nucleotide-releasing
           factor 1 isoform 2 [Homo sapiens]
          Length = 489

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 232 SPGSRETSAATLSPGASSRGWDDGDTRSEHSYSESGASGSSFEELDLEGEGPLGESRLDP 291
           S  + +TS   +S   +++  D+GDT  E     S  S  S  E+ +  E  + +++ D 
Sbjct: 9   SKATLDTSKLYVSSSFTNKIPDEGDTTPEKPEDPSALSKQS-SEVSMREESDIDQNQSDD 67

Query: 292 GTEPLGTTKWLWEPTAPEKGK 312
           G      TK    PT P+  K
Sbjct: 68  GDTETSPTK---SPTTPKSVK 85


>gi|17978466 cyclin T1 [Homo sapiens]
          Length = 726

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 193 PEMKETEWKWRGLVEAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSAATLSPGASS 249
           P   +  W WR    A  T+ D  G D  +   ++   +S  S +T+ A L   ++S
Sbjct: 249 PNRLKRIWNWRACEAAKKTKADDRGTDEKTSEQTILNMISQSSSDTTIAGLMSMSTS 305


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,520,692
Number of Sequences: 37866
Number of extensions: 646649
Number of successful extensions: 2207
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2162
Number of HSP's gapped (non-prelim): 91
length of query: 313
length of database: 18,247,518
effective HSP length: 102
effective length of query: 211
effective length of database: 14,385,186
effective search space: 3035274246
effective search space used: 3035274246
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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