Search of human proteins with 193788560

Search of human proteins with 193788560

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|193788560 cerebral endothelial cell adhesion molecule 1
[Homo sapiens]
         (595 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|193788560 cerebral endothelial cell adhesion molecule 1 [Homo...  1226   0.0  
gi|31377697 glycosyltransferase 25 domain containing 1 [Homo sap...   661   0.0  
gi|16506820 glycosyltransferase 25 domain containing 2 [Homo sap...   639   0.0  
gi|4505891 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 pr...    78   3e-14
gi|62739166 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i...    67   4e-11
gi|32307144 lysyl hydroxylase 1 precursor [Homo sapiens]               67   4e-11
gi|33636742 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 i...    63   7e-10
gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]        34   0.44 
gi|5901926 cleavage and polyadenylation specific factor 5 [Homo ...    32   1.7  
gi|22538457 nuclear receptor coactivator 1 isoform 2 [Homo sapiens]    30   4.8  
gi|22538459 nuclear receptor coactivator 1 isoform 3 [Homo sapiens]    30   4.8  
gi|22538455 nuclear receptor coactivator 1 isoform 1 [Homo sapiens]    30   4.8  

>gi|193788560 cerebral endothelial cell adhesion molecule 1 [Homo
           sapiens]
          Length = 595

 Score = 1226 bits (3172), Expect = 0.0
 Identities = 595/595 (100%), Positives = 595/595 (100%)

Query: 1   MRAARAAPLLQLLLLLGPWLEAAGVAESPLPAVVLAILARNAEHSLPHYLGALERLDYPR 60
           MRAARAAPLLQLLLLLGPWLEAAGVAESPLPAVVLAILARNAEHSLPHYLGALERLDYPR
Sbjct: 1   MRAARAAPLLQLLLLLGPWLEAAGVAESPLPAVVLAILARNAEHSLPHYLGALERLDYPR 60

Query: 61  ARMALWCATDHNVDNTTEMLQEWLAAVGDDYAAVVWRPEGEPRFYPDEEGPKHWTKERHQ 120
           ARMALWCATDHNVDNTTEMLQEWLAAVGDDYAAVVWRPEGEPRFYPDEEGPKHWTKERHQ
Sbjct: 61  ARMALWCATDHNVDNTTEMLQEWLAAVGDDYAAVVWRPEGEPRFYPDEEGPKHWTKERHQ 120

Query: 121 FLMELKQEALTFARNWGADYILFADTDNILTNNQTLRLLMGQGLPVVAPMLDSQTYYSNF 180
           FLMELKQEALTFARNWGADYILFADTDNILTNNQTLRLLMGQGLPVVAPMLDSQTYYSNF
Sbjct: 121 FLMELKQEALTFARNWGADYILFADTDNILTNNQTLRLLMGQGLPVVAPMLDSQTYYSNF 180

Query: 181 WCGITPQGYYRRTAEYFPTKNRQRRGCFRVPMVHSTFLASLRAEGADQLAFYPPHPNYTW 240
           WCGITPQGYYRRTAEYFPTKNRQRRGCFRVPMVHSTFLASLRAEGADQLAFYPPHPNYTW
Sbjct: 181 WCGITPQGYYRRTAEYFPTKNRQRRGCFRVPMVHSTFLASLRAEGADQLAFYPPHPNYTW 240

Query: 241 PFDDIIVFAYACQAAGVSVHVCNEHRYGYMNVPVKSHQGLEDERVNFIHLILEALVDGPR 300
           PFDDIIVFAYACQAAGVSVHVCNEHRYGYMNVPVKSHQGLEDERVNFIHLILEALVDGPR
Sbjct: 241 PFDDIIVFAYACQAAGVSVHVCNEHRYGYMNVPVKSHQGLEDERVNFIHLILEALVDGPR 300

Query: 301 MQASAHVTRPSKRPSKIGFDEVFVISLARRPDRRERMLASLWEMEISGRVVDAVDGWMLN 360
           MQASAHVTRPSKRPSKIGFDEVFVISLARRPDRRERMLASLWEMEISGRVVDAVDGWMLN
Sbjct: 301 MQASAHVTRPSKRPSKIGFDEVFVISLARRPDRRERMLASLWEMEISGRVVDAVDGWMLN 360

Query: 361 SSAIRNLGVDLLPGYQDPYSGRTLTKGEVGCFLSHYSIWEEVVARGLARVLVFEDDVRFE 420
           SSAIRNLGVDLLPGYQDPYSGRTLTKGEVGCFLSHYSIWEEVVARGLARVLVFEDDVRFE
Sbjct: 361 SSAIRNLGVDLLPGYQDPYSGRTLTKGEVGCFLSHYSIWEEVVARGLARVLVFEDDVRFE 420

Query: 421 SNFRGRLERLMEDVEAEKLSWDLIYLGRKQVNPEKETAVEGLPGLVVAGYSYWTLAYALR 480
           SNFRGRLERLMEDVEAEKLSWDLIYLGRKQVNPEKETAVEGLPGLVVAGYSYWTLAYALR
Sbjct: 421 SNFRGRLERLMEDVEAEKLSWDLIYLGRKQVNPEKETAVEGLPGLVVAGYSYWTLAYALR 480

Query: 481 LAGARKLLASQPLRRMLPVDEFLPIMFDQHPNEQYKAHFWPRDLVAFSAQPLLAAPTHYA 540
           LAGARKLLASQPLRRMLPVDEFLPIMFDQHPNEQYKAHFWPRDLVAFSAQPLLAAPTHYA
Sbjct: 481 LAGARKLLASQPLRRMLPVDEFLPIMFDQHPNEQYKAHFWPRDLVAFSAQPLLAAPTHYA 540

Query: 541 GDAEWLSDTETSSPWDDDSGRLISWSGSQKTLRSPRLDLTGSSGHSLQPQPRDEL 595
           GDAEWLSDTETSSPWDDDSGRLISWSGSQKTLRSPRLDLTGSSGHSLQPQPRDEL
Sbjct: 541 GDAEWLSDTETSSPWDDDSGRLISWSGSQKTLRSPRLDLTGSSGHSLQPQPRDEL 595


>gi|31377697 glycosyltransferase 25 domain containing 1 [Homo
           sapiens]
          Length = 622

 Score =  661 bits (1705), Expect = 0.0
 Identities = 340/613 (55%), Positives = 426/613 (69%), Gaps = 23/613 (3%)

Query: 5   RAAPLLQLLLLLGPWL-------------EAAGVAESPL--PAVVLAILARNAEHSLPHY 49
           R  PLL LLLLL   L             E     ESPL  P V++A+LARNA H+LP  
Sbjct: 11  RGQPLLALLLLLLAPLPPGAPPGADAYFPEERWSPESPLQAPRVLIALLARNAAHALPTT 70

Query: 50  LGALERLDYPRARMALWCATDHNVDNTTEMLQEWLAAVGDDYAAVVWRPEGEPRFYPDEE 109
           LGALERL +PR R ALW ATDHN+DNT+ +L+EWL AV   Y +V WRP  EPR YPDEE
Sbjct: 71  LGALERLRHPRERTALWVATDHNMDNTSTVLREWLVAVKSLYHSVEWRPAEEPRSYPDEE 130

Query: 110 GPKHWTKERHQFLMELKQEALTFARNWGADYILFADTDNILTNNQTLRLLMGQGLPVVAP 169
           GPKHW+  R++ +M+L+Q AL  AR+  ADYILF D DN++ N  TL LL+ +   VVAP
Sbjct: 131 GPKHWSDSRYEHVMKLRQAALKSARDMWADYILFVDADNLILNPDTLSLLIAENKTVVAP 190

Query: 170 MLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQRRGCFRVPMVHSTFLASLRAEGADQL 229
           MLDS+  YSNFWCG+T QGYY+RT  Y P + R RRGCF VPMVHSTFL  LR   +  L
Sbjct: 191 MLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRDRRGCFAVPMVHSTFLIDLRKAASRNL 250

Query: 230 AFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNEHRYGYMNVPVKSHQGLEDERVNFIH 289
           AFYPPHP+YTW FDDIIVFA++C+ A V ++VCN+  YG++ VP+++H  L+DE  +F+H
Sbjct: 251 AFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEEYGFLPVPLRAHSTLQDEAESFMH 310

Query: 290 LILEALVDGPRMQASAHVTRPSKRPSKIGFDEVFVISLARRPDRRERMLASLWEMEISGR 349
           + LE +V  P  + S  ++ P+K P K+GFDEVF+I+L RR DRRERML +L   EI  R
Sbjct: 311 VQLEVMVKHPPAEPSRFISAPTKTPDKMGFDEVFMINLRRRQDRRERMLRALQAQEIECR 370

Query: 350 VVDAVDGWMLNSSAIRNLGVDLLPGYQDPYSGRTLTKGEVGCFLSHYSIWEEVVARGLAR 409
           +V+AVDG  +N+S +  LG+ +LPGY+DPY GR LTKGE+GCFLSHY+IW+EVV RGL +
Sbjct: 371 LVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSHYNIWKEVVDRGLQK 430

Query: 410 VLVFEDDVRFESNFRGRLERLMEDVEAEKLSWDLIYLGRKQVNPE-KETAVEGLPGLVVA 468
            LVFEDD+RFE  F+ RL  LM DVE E L WDLIY+GRK++  E  E AV  +  LV A
Sbjct: 431 SLVFEDDLRFEIFFKRRLMNLMRDVEREGLDWDLIYVGRKRMQVEHPEKAVPRVRNLVEA 490

Query: 469 GYSYWTLAYALRLAGARKLLASQPLRRMLPVDEFLPIMFDQHPNEQYKAHFWPRDLVAFS 528
            YSYWTLAY + L GARKLLA++PL +MLPVDEFLP+MFD+HP  +YKAHF  R+L AFS
Sbjct: 491 DYSYWTLAYVISLQGARKLLAAEPLSKMLPVDEFLPVMFDKHPVSEYKAHFSLRNLHAFS 550

Query: 529 AQPLLAAPTHYAGDAEWLSDTETSSPWDDDSGRLISW--SGSQKTLRSPRLDLTGSSGHS 586
            +PLL  PTHY GD  ++SDTETS  W+++  +   W  + SQK      L     +   
Sbjct: 551 VEPLLIYPTHYTGDDGYVSDTETSVVWNNEHVK-TDWDRAKSQKMREQQALSREAKNSDV 609

Query: 587 LQ----PQPRDEL 595
           LQ       RDEL
Sbjct: 610 LQSPLDSAARDEL 622


>gi|16506820 glycosyltransferase 25 domain containing 2 [Homo
           sapiens]
          Length = 626

 Score =  639 bits (1647), Expect = 0.0
 Identities = 297/536 (55%), Positives = 399/536 (74%), Gaps = 3/536 (0%)

Query: 27  ESPL--PAVVLAILARNAEHSLPHYLGALERLDYPRARMALWCATDHNVDNTTEMLQEWL 84
           ESPL  P V++A+LARNA H+LPH+LG LERLDYP++RMA+W ATDHNVDNTTE+ +EWL
Sbjct: 47  ESPLQSPTVLVAVLARNAAHTLPHFLGCLERLDYPKSRMAIWAATDHNVDNTTEIFREWL 106

Query: 85  AAVGDDYAAVVWRPEGEPRFYPDEEGPKHWTKERHQFLMELKQEALTFARNWGADYILFA 144
             V   Y  V WRP  EP  YPDE GPKHW   R   +M+L+Q AL  AR   +DYILF 
Sbjct: 107 KNVQRLYHYVEWRPMDEPESYPDEIGPKHWPTSRFAHVMKLRQAALRTAREKWSDYILFI 166

Query: 145 DTDNILTNNQTLRLLMGQGLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQR 204
           D DN LTN QTL LL+ +   +VAPML+S+  YSNFWCGITP+G+Y+RT +Y   +  +R
Sbjct: 167 DVDNFLTNPQTLNLLIAENKTIVAPMLESRGLYSNFWCGITPKGFYKRTPDYVQIREWKR 226

Query: 205 RGCFRVPMVHSTFLASLRAEGADQLAFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNE 264
            GCF VPMVHSTFL  LR E +D+L FYPPH +YTW FDDIIVFA++ + AG+ +++CN 
Sbjct: 227 TGCFPVPMVHSTFLIDLRKEASDKLTFYPPHQDYTWTFDDIIVFAFSSRQAGIQMYLCNR 286

Query: 265 HRYGYMNVPVKSHQGLEDERVNFIHLILEALVDGPRMQASAHVTRPSKRPSKIGFDEVFV 324
             YGY+ +P+K HQ L+++  N IH+ +EA++D P M+ S +V+   K P K+GFDE+F+
Sbjct: 287 EHYGYLPIPLKPHQTLQEDIENLIHVQIEAMIDRPPMEPSQYVSVVPKYPDKMGFDEIFM 346

Query: 325 ISLARRPDRRERMLASLWEMEISGRVVDAVDGWMLNSSAIRNLGVDLLPGYQDPYSGRTL 384
           I+L RR DRR+RML +L+E EI  ++V+AVDG  LN+S ++ L +++LPGY+DPYS R L
Sbjct: 347 INLKRRKDRRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKALNIEMLPGYRDPYSSRPL 406

Query: 385 TKGEVGCFLSHYSIWEEVVARGLARVLVFEDDVRFESNFRGRLERLMEDVEAEKLSWDLI 444
           T+GE+GCFLSHYS+W+EV+ R L + LV EDDVRFE  F+ +L +LM++++  +L W+LI
Sbjct: 407 TRGEIGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQFKKKLMKLMDNIDQAQLDWELI 466

Query: 445 YLGRKQVN-PEKETAVEGLPGLVVAGYSYWTLAYALRLAGARKLLASQPLRRMLPVDEFL 503
           Y+GRK++   E E AV  +  LV A YSYWTL Y + L GA+KL+ + P  +MLPVDEFL
Sbjct: 467 YIGRKRMQVKEPEKAVPNVANLVEADYSYWTLGYVISLEGAQKLVGANPFGKMLPVDEFL 526

Query: 504 PIMFDQHPNEQYKAHFWPRDLVAFSAQPLLAAPTHYAGDAEWLSDTETSSPWDDDS 559
           P+M+++HP  +YK ++  RDL AFSA+PLL  PTHY G   +LSDTETS+ WD+++
Sbjct: 527 PVMYNKHPVAEYKEYYESRDLKAFSAEPLLIYPTHYTGQPGYLSDTETSTIWDNET 582


>gi|4505891 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
           precursor [Homo sapiens]
          Length = 738

 Score = 77.8 bits (190), Expect = 3e-14
 Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 28/244 (11%)

Query: 29  PLPAVVLAILARNAEHSLPHYLGALERLDYPRARMALWCATDHNVDNTTEMLQEWLAAVG 88
           P P V LA+        LP +L  L  LDYP  R+ L+   ++ V +   +   W   + 
Sbjct: 294 PPPRVFLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFLH-NNEVFHEPHIADSW-PQLQ 351

Query: 89  DDYAAVVWRPEGEPRFYPDEEGPKHWTKERHQFLMELKQEALTFARNWGADYILFADTDN 148
           D ++AV        +    EE       E     M+L ++      +   ++    D D 
Sbjct: 352 DHFSAV--------KLVGPEEALS--PGEARDMAMDLCRQ------DPECEFYFSLDADA 395

Query: 149 ILTNNQTLRLLMGQGLPVVAPMLDSQ-TYYSNFWCGITPQGYYRRTAEYFPTKNRQRRGC 207
           +LTN QTLR+L+ +   V+APML      +SNFW  ++P  YY R+ +Y     R+R G 
Sbjct: 396 VLTNLQTLRILIEENRKVIAPMLSRHGKLWSNFWGALSPDEYYARSEDYVELVQRKRVGV 455

Query: 208 FRVPMVHSTFLA---SLRAEGADQLAFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNE 264
           + VP +   ++    +LR E   +  F           D  + F  + +  G+ +H+ N+
Sbjct: 456 WNVPYISQAYVIRGDTLRMELPQRDVFSGSDT------DPDMAFCKSFRDKGIFLHLSNQ 509

Query: 265 HRYG 268
           H +G
Sbjct: 510 HEFG 513


>gi|62739166 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2
           isoform b precursor [Homo sapiens]
          Length = 737

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 44/250 (17%)

Query: 31  PAVVLAILARNAEHSLPHYLGALERLDYPRARMALWCATDHNVDNTTEMLQEWLAAVGDD 90
           P V + +        LP +L  L  LDYP+  + L+    HN +                
Sbjct: 296 PNVSIGVFIEQPTPFLPRFLDILLTLDYPKEALKLFI---HNKE---------------- 336

Query: 91  YAAVVWRPEGEPRFYPDEEGPKHWTK-------ERHQFLMELKQEALTFAR-NWGADYIL 142
               V+  +    F+   +  KH  K       E +    E +   + F R +   DY  
Sbjct: 337 ----VYHEKDIKVFF---DKAKHEIKTIKIVGPEENLSQAEARNMGMDFCRQDEKCDYYF 389

Query: 143 FADTDNILTNNQTLRLLMGQGLPVVAPMLDSQ-TYYSNFWCGITPQGYYRRTAEYFPTKN 201
             D D +LTN +TL++L+ Q   ++AP++      +SNFW  ++P GYY R+ +Y     
Sbjct: 390 SVDADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYARSEDYVDIVQ 449

Query: 202 RQRRGCFRVPMVHSTFL---ASLRAEGADQLAFYPPHPNYTWPFDDIIVFAYACQAAGVS 258
             R G + VP + + +L    +LR+E  ++  F           D  +      +  GV 
Sbjct: 450 GNRVGVWNVPYMANVYLIKGKTLRSEMNERNYFVRD------KLDPDMALCRNAREMGVF 503

Query: 259 VHVCNEHRYG 268
           +++ N H +G
Sbjct: 504 MYISNRHEFG 513


>gi|32307144 lysyl hydroxylase 1 precursor [Homo sapiens]
          Length = 727

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 65/261 (24%), Positives = 107/261 (40%), Gaps = 48/261 (18%)

Query: 24  GVAESPLPAVVLAILARNAEHSLPHYLGALERLDYPRARMALWCATDHNVDNTTE-MLQE 82
           G+ +  LP V++ +        +  +   L RL YP+  M L+    HN +   +  ++E
Sbjct: 279 GIGDEALPTVLVGVFIEQPTPFVSLFFQRLLRLHYPQKHMRLFI---HNHEQHHKAQVEE 335

Query: 83  WLAAVGDDYAAVVWRPEGEPRFYPDEEGPKHWTKERHQFLMELKQEALTFARNWGAD--- 139
           +LA  G +Y +V               GP+              + A   ARN GAD   
Sbjct: 336 FLAQHGSEYQSVKL------------VGPE-------------VRMANADARNMGADLCR 370

Query: 140 ------YILFADTDNILTNNQTLRLLMGQGLPVVAPMLDSQ-TYYSNFWCGITPQGYYRR 192
                 Y    D D  LT   +LRLL+ Q   V+AP++      +SNFW  ++  GYY R
Sbjct: 371 QDRSCTYYFSVDADVALTEPNSLRLLIQQNKNVIAPLMTRHGRLWSNFWGALSADGYYAR 430

Query: 193 TAEYFPTKNRQRRGCFRVPMVHSTFL---ASLRAEGADQLAFYPPHPNYTWPFDDIIVFA 249
           + +Y      +R G + VP + + +L   ++LR E      F+          D  + F 
Sbjct: 431 SEDYVDIVQGRRVGVWNVPYISNIYLIKGSALRGELQSSDLFHHS------KLDPDMAFC 484

Query: 250 YACQAAGVSVHVCNEHRYGYM 270
              +   V + + N H  G++
Sbjct: 485 ANIRQQDVFMFLTNRHTLGHL 505


>gi|33636742 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2
           isoform a precursor [Homo sapiens]
          Length = 758

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 38/206 (18%)

Query: 31  PAVVLAILARNAEHSLPHYLGALERLDYPRARMALWCATDHNVDNTTEMLQEWLAAVGDD 90
           P V + +        LP +L  L  LDYP+  + L+    HN +                
Sbjct: 296 PNVSIGVFIEQPTPFLPRFLDILLTLDYPKEALKLFI---HNKE---------------- 336

Query: 91  YAAVVWRPEGEPRFYPDEEGPKHWTK-------ERHQFLMELKQEALTFAR-NWGADYIL 142
               V+  +    F+   +  KH  K       E +    E +   + F R +   DY  
Sbjct: 337 ----VYHEKDIKVFF---DKAKHEIKTIKIVGPEENLSQAEARNMGMDFCRQDEKCDYYF 389

Query: 143 FADTDNILTNNQTLRLLMGQGLPVVAPMLDSQ-TYYSNFWCGITPQGYYRRTAEYFPTKN 201
             D D +LTN +TL++L+ Q   ++AP++      +SNFW  ++P GYY R+ +Y     
Sbjct: 390 SVDADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYARSEDYVDIVQ 449

Query: 202 RQRRGCFRVPMVHSTFL---ASLRAE 224
             R G + VP + + +L    +LR+E
Sbjct: 450 GNRVGVWNVPYMANVYLIKGKTLRSE 475


>gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]
          Length = 5183

 Score = 33.9 bits (76), Expect = 0.44
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 535  APTHYAGDAEWLSDTETSSPWDDDSGRLISWSGSQKTLRSPRLDLTGSSG 584
            AP+  + DA  LSDT  S+P  DD G   +  GS  TLR+   D  GS G
Sbjct: 2847 APSSSSLDAGTLSDTTASAPASDDEGSTAATDGS--TLRTSPADHGGSVG 2894


>gi|5901926 cleavage and polyadenylation specific factor 5 [Homo
           sapiens]
          Length = 227

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 8/55 (14%)

Query: 79  MLQEWLAAVGDDYAAVVWRPEGEPRFYPDEEGPKHWTKERHQ---FLMELKQEAL 130
           +LQ+W+    DD     WRP  EP  YP    P H TK +     FL++L+++AL
Sbjct: 135 VLQDWVI---DDCIGNWWRPNFEPPQYP--YIPAHITKPKEHKKLFLVQLQEKAL 184


>gi|22538457 nuclear receptor coactivator 1 isoform 2 [Homo sapiens]
          Length = 1399

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 220 SLRAEGADQLAFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNEHRYGYMNVPVKSHQG 279
           S R +    LA  P  PN ++P +     +      G++   CN +   Y N+PV S QG
Sbjct: 488 SPRRQVTSGLATRPRMPNNSFPPN----ISTLSSPVGMTSSACNNNNRSYSNIPVTSLQG 543

Query: 280 LED 282
           + +
Sbjct: 544 MNE 546


>gi|22538459 nuclear receptor coactivator 1 isoform 3 [Homo sapiens]
          Length = 1440

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 220 SLRAEGADQLAFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNEHRYGYMNVPVKSHQG 279
           S R +    LA  P  PN ++P +     +      G++   CN +   Y N+PV S QG
Sbjct: 488 SPRRQVTSGLATRPRMPNNSFPPN----ISTLSSPVGMTSSACNNNNRSYSNIPVTSLQG 543

Query: 280 LED 282
           + +
Sbjct: 544 MNE 546


>gi|22538455 nuclear receptor coactivator 1 isoform 1 [Homo sapiens]
          Length = 1441

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 220 SLRAEGADQLAFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNEHRYGYMNVPVKSHQG 279
           S R +    LA  P  PN ++P +     +      G++   CN +   Y N+PV S QG
Sbjct: 488 SPRRQVTSGLATRPRMPNNSFPPN----ISTLSSPVGMTSSACNNNNRSYSNIPVTSLQG 543

Query: 280 LED 282
           + +
Sbjct: 544 MNE 546


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,937,571
Number of Sequences: 37866
Number of extensions: 1098605
Number of successful extensions: 2315
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2297
Number of HSP's gapped (non-prelim): 16
length of query: 595
length of database: 18,247,518
effective HSP length: 108
effective length of query: 487
effective length of database: 14,157,990
effective search space: 6894941130
effective search space used: 6894941130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.