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Search of human proteins with 192449447
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|192449447 proteolipid protein 1 isoform 1 [Homo sapiens]
(277 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41349499 proteolipid protein 1 isoform 1 [Homo sapiens] 575 e-164
gi|192449447 proteolipid protein 1 isoform 1 [Homo sapiens] 575 e-164
gi|41349501 proteolipid protein 1 isoform 2 [Homo sapiens] 479 e-135
gi|50263053 glycoprotein M6B isoform 4 [Homo sapiens] 278 5e-75
gi|50263050 glycoprotein M6B isoform 2 [Homo sapiens] 276 2e-74
gi|24307895 glycoprotein M6B isoform 3 [Homo sapiens] 276 2e-74
gi|50263048 glycoprotein M6B isoform 1 [Homo sapiens] 263 1e-70
gi|42476105 glycoprotein M6A isoform 3 [Homo sapiens] 203 2e-52
gi|42476108 glycoprotein M6A isoform 2 [Homo sapiens] 201 6e-52
gi|14149619 glycoprotein M6A isoform 1 [Homo sapiens] 201 6e-52
gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens] 31 1.0
gi|223718080 transmembrane channel-like 4 isoform 1 [Homo sapiens] 31 1.0
gi|115298678 complement component 3 precursor [Homo sapiens] 29 3.9
gi|169214179 PREDICTED: similar to complement component 3 [Homo ... 29 3.9
gi|119703742 vitelliform macular dystrophy 2-like 1 [Homo sapiens] 29 5.2
gi|222418585 zinc finger protein 814 [Homo sapiens] 28 6.7
gi|239757378 PREDICTED: similar to zinc finger protein 587 [Homo... 28 6.7
gi|46358076 zinc finger protein 552 [Homo sapiens] 28 6.7
gi|17738287 secretory carrier membrane protein 4 [Homo sapiens] 28 8.8
>gi|41349499 proteolipid protein 1 isoform 1 [Homo sapiens]
Length = 277
Score = 575 bits (1481), Expect = e-164
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
Query: 181 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
Sbjct: 181 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
Query: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
Sbjct: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
>gi|192449447 proteolipid protein 1 isoform 1 [Homo sapiens]
Length = 277
Score = 575 bits (1481), Expect = e-164
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
Query: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
Sbjct: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
Query: 181 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
Sbjct: 181 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
Query: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
Sbjct: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
>gi|41349501 proteolipid protein 1 isoform 2 [Homo sapiens]
Length = 242
Score = 479 bits (1232), Expect = e-135
Identities = 242/277 (87%), Positives = 242/277 (87%), Gaps = 35/277 (12%)
Query: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
Query: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSAT
Sbjct: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSAT---- 116
Query: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
FVGITYALTVVWLLVFACSAVPVYIYFNT
Sbjct: 117 -------------------------------FVGITYALTVVWLLVFACSAVPVYIYFNT 145
Query: 181 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
Sbjct: 146 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 205
Query: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
Sbjct: 206 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 242
>gi|50263053 glycoprotein M6B isoform 4 [Homo sapiens]
Length = 246
Score = 278 bits (710), Expect = 5e-75
Identities = 137/274 (50%), Positives = 173/274 (63%), Gaps = 36/274 (13%)
Query: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY 60
MG ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+
Sbjct: 1 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHAL 60
Query: 61 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG 120
L VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 61 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM---- 116
Query: 121 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT 180
FV +TY L V WL VF SAVPV++++N
Sbjct: 117 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI 145
Query: 181 WTTCQSIAFPSKTSAS-IGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHL 239
W+TC+ I P + + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HL
Sbjct: 146 WSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHL 205
Query: 240 FIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGR 273
FI A GA AT+++LL +M+A TYN+AVLK R
Sbjct: 206 FIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 239
>gi|50263050 glycoprotein M6B isoform 2 [Homo sapiens]
Length = 305
Score = 276 bits (705), Expect = 2e-74
Identities = 136/273 (49%), Positives = 172/273 (63%), Gaps = 36/273 (13%)
Query: 2 GLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYL 61
G ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+ L
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
Query: 62 INVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQ 121
VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM----- 175
Query: 122 KGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNTW 181
FV +TY L V WL VF SAVPV++++N W
Sbjct: 176 ------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNIW 205
Query: 182 TTCQSIAFPSKTSAS-IGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
+TC+ I P + + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HLF
Sbjct: 206 STCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLF 265
Query: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGR 273
I A GA AT+++LL +M+A TYN+AVLK R
Sbjct: 266 IVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298
>gi|24307895 glycoprotein M6B isoform 3 [Homo sapiens]
Length = 265
Score = 276 bits (705), Expect = 2e-74
Identities = 136/273 (49%), Positives = 172/273 (63%), Gaps = 36/273 (13%)
Query: 2 GLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYL 61
G ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+ L
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 80
Query: 62 INVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQ 121
VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 81 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM----- 135
Query: 122 KGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNTW 181
FV +TY L V WL VF SAVPV++++N W
Sbjct: 136 ------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNIW 165
Query: 182 TTCQSIAFPSKTSAS-IGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
+TC+ I P + + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HLF
Sbjct: 166 STCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLF 225
Query: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGR 273
I A GA AT+++LL +M+A TYN+AVLK R
Sbjct: 226 IVACAGAGATVIALLIYMMATTYNYAVLKFKSR 258
>gi|50263048 glycoprotein M6B isoform 1 [Homo sapiens]
Length = 328
Score = 263 bits (672), Expect = 1e-70
Identities = 130/269 (48%), Positives = 168/269 (62%), Gaps = 36/269 (13%)
Query: 2 GLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYL 61
G ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+ L
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
Query: 62 INVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQ 121
VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM----- 175
Query: 122 KGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNTW 181
FV +TY L V WL VF SAVPV++++N W
Sbjct: 176 ------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNIW 205
Query: 182 TTCQSIAFPSKTSAS-IGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
+TC+ I P + + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HLF
Sbjct: 206 STCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLF 265
Query: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLK 269
I A GA AT+++L+ F++ + N+A LK
Sbjct: 266 IVACAGAGATVIALIHFLMILSSNWAYLK 294
>gi|42476105 glycoprotein M6A isoform 3 [Homo sapiens]
Length = 267
Score = 203 bits (516), Expect = 2e-52
Identities = 107/281 (38%), Positives = 160/281 (56%), Gaps = 45/281 (16%)
Query: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDY 58
MG ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT +++TYF ++ D
Sbjct: 1 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDT 60
Query: 59 EYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVT 118
+ +I F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+
Sbjct: 61 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR------- 113
Query: 119 GGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYF 178
C+ W F+ +TY + WL V A +++PVY+YF
Sbjct: 114 ----------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPVYMYF 145
Query: 179 NTWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAEFQMT 236
N WT C++ T +LC D R +G++ K+C N L +C++ E MT
Sbjct: 146 NLWTICRNT-----TLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTELNMT 199
Query: 237 FHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
FHLFI A GA A +++++ +++ + N+A +K R K+
Sbjct: 200 FHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKY 240
>gi|42476108 glycoprotein M6A isoform 2 [Homo sapiens]
Length = 278
Score = 201 bits (511), Expect = 6e-52
Identities = 106/280 (37%), Positives = 159/280 (56%), Gaps = 45/280 (16%)
Query: 2 GLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDYE 59
G ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT +++TYF ++ D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 60 YLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTG 119
+ +I F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR-------- 124
Query: 120 GQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFN 179
C+ W F+ +TY + WL V A +++PVY+YFN
Sbjct: 125 ---------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPVYMYFN 157
Query: 180 TWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAEFQMTF 237
WT C++ T +LC D R +G++ K+C N L +C++ E MTF
Sbjct: 158 LWTICRNT-----TLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTELNMTF 211
Query: 238 HLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
HLFI A GA A +++++ +++ + N+A +K R K+
Sbjct: 212 HLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKY 251
>gi|14149619 glycoprotein M6A isoform 1 [Homo sapiens]
Length = 278
Score = 201 bits (511), Expect = 6e-52
Identities = 106/280 (37%), Positives = 159/280 (56%), Gaps = 45/280 (16%)
Query: 2 GLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDYE 59
G ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT +++TYF ++ D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 60 YLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTG 119
+ +I F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR-------- 124
Query: 120 GQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFN 179
C+ W F+ +TY + WL V A +++PVY+YFN
Sbjct: 125 ---------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPVYMYFN 157
Query: 180 TWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAEFQMTF 237
WT C++ T +LC D R +G++ K+C N L +C++ E MTF
Sbjct: 158 LWTICRNT-----TLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTELNMTF 211
Query: 238 HLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
HLFI A GA A +++++ +++ + N+A +K R K+
Sbjct: 212 HLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKY 251
>gi|21389589 transmembrane channel-like 4 isoform 2 [Homo sapiens]
Length = 706
Score = 31.2 bits (69), Expect = 1.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 149 PDKFVGITYALTVVWLLVFACSAVPV 174
PD+ +G+ YA TVVW+ F C +P+
Sbjct: 523 PDEVLGLIYAQTVVWVGSFFCPLLPL 548
>gi|223718080 transmembrane channel-like 4 isoform 1 [Homo sapiens]
Length = 712
Score = 31.2 bits (69), Expect = 1.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 149 PDKFVGITYALTVVWLLVFACSAVPV 174
PD+ +G+ YA TVVW+ F C +P+
Sbjct: 529 PDEVLGLIYAQTVVWVGSFFCPLLPL 554
>gi|115298678 complement component 3 precursor [Homo sapiens]
Length = 1663
Score = 29.3 bits (64), Expect = 3.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 171 AVPVYIYFNTWTTCQSIAFPSKTSASIGSLCAD 203
AV VY Y+N +C P K + LC D
Sbjct: 1476 AVKVYAYYNLEESCTRFYHPEKEDGKLNKLCRD 1508
>gi|169214179 PREDICTED: similar to complement component 3 [Homo
sapiens]
Length = 390
Score = 29.3 bits (64), Expect = 3.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 171 AVPVYIYFNTWTTCQSIAFPSKTSASIGSLCAD 203
AV VY Y+N +C P K + LC D
Sbjct: 203 AVKVYAYYNLEESCTRFYHPEKEDGKLNKLCRD 235
>gi|119703742 vitelliform macular dystrophy 2-like 1 [Homo sapiens]
Length = 509
Score = 28.9 bits (63), Expect = 5.2
Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 20/114 (17%)
Query: 24 LCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYLINVIHAFQYVIYGTASFFFLYG 83
LCF G + AL+ + + T K Y +E L VI+ QY SF
Sbjct: 37 LCFLGFYM-------ALSAAYRFVLTEGQKRY--FEKL--VIYCDQYASLIPVSFVL--- 82
Query: 84 ALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQKGRGSRGQHQAHSLER 137
GFY T V + + Y L V G GR RG+ +L R
Sbjct: 83 ------GFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDRGRLYRRTLMR 130
>gi|222418585 zinc finger protein 814 [Homo sapiens]
Length = 855
Score = 28.5 bits (62), Expect = 6.7
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 181 WTTCQSIAFPSKTSASIG-SLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFH 238
W + A PSK S I M GV P A P ++CG L I A+ Q T H
Sbjct: 57 WCGVEDEAAPSKQSIYIQRETQVRTPMAGVSPKKAHPCEMCGPILGDILHVADHQGTHH 115
>gi|239757378 PREDICTED: similar to zinc finger protein 587 [Homo
sapiens]
Length = 577
Score = 28.5 bits (62), Expect = 6.7
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 181 WTTCQSIAFPSKTSASIG-SLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFH 238
W + A PSK S I M GV P A P ++CG L I A+ Q T H
Sbjct: 57 WCGVEDEAAPSKQSIYIQRETQVRTPMTGVSPKKAHPCEMCGPILGDILHVADHQGTHH 115
>gi|46358076 zinc finger protein 552 [Homo sapiens]
Length = 407
Score = 28.5 bits (62), Expect = 6.7
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 181 WTTCQSIAFPSKTSASIG-SLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFH 238
W + A PSK S I M GV P A P ++CG L I A+ Q T H
Sbjct: 56 WCGVEDEAAPSKQSIYIQRETQVRTPMAGVSPKKAHPCEMCGPILGDILHVADHQGTHH 114
>gi|17738287 secretory carrier membrane protein 4 [Homo sapiens]
Length = 229
Score = 28.1 bits (61), Expect = 8.8
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 141 CLGKWLGHPDKFVGITYALTVVWLLVF-----ACSAVPVYIYFNTWTTCQSIAF 189
CL W+G G + L VWLL+F C PVY F ++ +AF
Sbjct: 58 CLAWWIGGGS---GTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAF 108
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.141 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,170,442
Number of Sequences: 37866
Number of extensions: 427006
Number of successful extensions: 1374
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 26
length of query: 277
length of database: 18,247,518
effective HSP length: 101
effective length of query: 176
effective length of database: 14,423,052
effective search space: 2538457152
effective search space used: 2538457152
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.