Guide to the Human Genome
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Name: ORMDL1 Sequence: fasta or formatted (153aa) NCBI GI: 189458852
Description:

ORM1-like 1

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt mRNA [153aa] ORM1-like 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6          7           1
 C cysteine            0.0          0           0
 D aspartate           2.0          3           1
 E glutamate           2.0          3           1
 F phenylalanine       7.2         11           2
 G glycine             6.5         10           1
 H histidine           4.6          7           1
 I isoleucine          7.2         11           2
 K lysine              3.9          6           1
 L leucine            12.4         19           2
 M methionine          3.3          5           1
 N asparagine          5.2          8           1
 P proline             5.9          9           1
 Q glutamine           2.6          4           1
 R arginine            3.3          5           1
 S serine              6.5         10           2
 T threonine           7.8         12           1
 V valine              8.5         13           1
 W tryptophan          2.0          3           1
 Y tyrosine            4.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ORM1-like 1 
ORMDL1                1.000   ORM1-like 1 
ORMDL3                0.886   ORM1-like 3 
ORMDL2                0.869   ORMDL2 
HACE1                 0.017   HECT domain and ankyrin repeat containing, E3 ubiqu...
CCR4                  0.017   chemokine (C-C motif) receptor 4 
LOC100294145          0.014   PREDICTED: hypothetical protein 
CUBN                  0.010   cubilin 
MBOAT1                0.010   membrane bound O-acyltransferase domain containing ...
HSF2                  0.010   heat shock transcription factor 2 isoform a 
TNIK                  0.007   TRAF2 and NCK interacting kinase isoform 8 
TNIK                  0.007   TRAF2 and NCK interacting kinase isoform 7 
TNIK                  0.007   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.007   TRAF2 and NCK interacting kinase isoform 5 
TNIK                  0.007   TRAF2 and NCK interacting kinase isoform 4 
TNIK                  0.007   TRAF2 and NCK interacting kinase isoform 3 
TNIK                  0.007   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.007   TRAF2 and NCK interacting kinase isoform 1 
LAMA5                 0.007   laminin alpha 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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