Search of human proteins with 189409104

Search of human proteins with 189409104

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|189409104 adaptor-related protein complex 4, sigma 1 subunit
isoform 2 [Homo sapiens]
         (144 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|189409104 adaptor-related protein complex 4, sigma 1 subunit ...   285   7e-78
gi|21361394 adaptor-related protein complex 4, sigma 1 subunit i...   209   8e-55
gi|70906430 adaptor-related protein complex 2, sigma 1 subunit i...   123   6e-29
gi|22027655 adaptor-related protein complex 1 sigma 2 subunit [H...   121   2e-28
gi|4557471 adaptor-related protein complex 1, sigma 1 subunit [H...   116   6e-27
gi|88703051 adaptor-related protein complex 1, sigma 3 subunit [...   115   1e-26
gi|5031581 adaptor-related protein complex 3, sigma 2 subunit [H...   104   2e-23
gi|4502861 adaptor-related protein complex 3, sigma 1 subunit [H...   104   3e-23
gi|11038643 adaptor-related protein complex 2, sigma 1 subunit i...    71   3e-13
gi|7705983 coatomer protein complex, subunit zeta 2 [Homo sapiens]     45   2e-05
gi|9506797 adaptor-related protein complex 1, mu 2 subunit [Homo...    39   0.002
gi|6912240 adaptor-related protein complex 3, mu 1 subunit [Homo...    37   0.007
gi|46370095 adaptor-related protein complex 3, mu 1 subunit [Hom...    37   0.007
gi|197209857 adaptor-related protein complex 3, mu 2 subunit [Ho...    36   0.010
gi|5803000 adaptor-related protein complex 3, mu 2 subunit [Homo...    36   0.010
gi|68799814 adaptor-related protein complex 2, mu 1 subunit isof...    35   0.017
gi|14917109 adaptor-related protein complex 2, mu 1 subunit isof...    35   0.017
gi|11863154 archain isoform 1 [Homo sapiens]                           34   0.037
gi|194473724 adaptor-related protein complex 1, mu 1 subunit iso...    31   0.31 
gi|14210504 adaptor-related protein complex 1, mu 1 subunit isof...    31   0.31 
gi|120433600 cyclic nucleotide gated channel alpha 3 isoform 2 [...    30   0.91 
gi|4502917 cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...    30   0.91 
gi|11342664 myxovirus resistance protein 2 [Homo sapiens]              28   2.7  
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [...    27   4.5  
gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [H...    27   4.5  
gi|224831262 calcium channel, voltage-dependent, beta 4 subunit ...    27   7.7  
gi|54607068 calcium channel, voltage-dependent, beta 4 subunit i...    27   7.7  
gi|54607066 calcium channel, voltage-dependent, beta 4 subunit i...    27   7.7  
gi|54607064 calcium channel, voltage-dependent, beta 4 subunit i...    27   7.7  

>gi|189409104 adaptor-related protein complex 4, sigma 1 subunit
           isoform 2 [Homo sapiens]
          Length = 144

 Score =  285 bits (730), Expect = 7e-78
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
           MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR
Sbjct: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60

Query: 61  QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
           QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN
Sbjct: 61  QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120

Query: 121 GCIVETNRARILAPLLILDKMSES 144
           GCIVETNRARILAPLLILDKMSES
Sbjct: 121 GCIVETNRARILAPLLILDKMSES 144


>gi|21361394 adaptor-related protein complex 4, sigma 1 subunit
           isoform 1 [Homo sapiens]
          Length = 159

 Score =  209 bits (531), Expect = 8e-55
 Identities = 103/105 (98%), Positives = 104/105 (99%)

Query: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
           MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR
Sbjct: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60

Query: 61  QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMF 105
           QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELD+ F
Sbjct: 61  QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDVSF 105


>gi|70906430 adaptor-related protein complex 2, sigma 1 subunit
           isoform AP17 [Homo sapiens]
          Length = 142

 Score =  123 bits (308), Expect = 6e-29
 Identities = 61/141 (43%), Positives = 95/141 (67%)

Query: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
           MI+F L+ N+ G+TRL+K+Y   D +++  L  EV      R  +  +F+E+++FK+IYR
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query: 61  QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
           +YA L+  + V+  +N +A  E IHNFVEVL+EYF  V ELD++FN  KV+ ++DEM L 
Sbjct: 61  RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query: 121 GCIVETNRARILAPLLILDKM 141
           G I ET++ ++L  LL+L  +
Sbjct: 121 GEIRETSQTKVLKQLLMLQSL 141


>gi|22027655 adaptor-related protein complex 1 sigma 2 subunit [Homo
           sapiens]
          Length = 157

 Score =  121 bits (303), Expect = 2e-28
 Identities = 52/142 (36%), Positives = 94/142 (66%)

Query: 2   IKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61
           ++F L+ ++QG+ RL K+Y  +   ++  +  E++++ L+R  + CSF+E++D K++Y++
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 62  YAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNG 121
           YA+L+    + D +NE+   E IH +VE+LD+YF  V ELDI+FN +K + ILDE +L G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 122 CIVETNRARILAPLLILDKMSE 143
            + ET++  +L  +   D + E
Sbjct: 121 EVQETSKKNVLKAIEQADLLQE 142


>gi|4557471 adaptor-related protein complex 1, sigma 1 subunit [Homo
           sapiens]
          Length = 158

 Score =  116 bits (291), Expect = 6e-27
 Identities = 51/143 (35%), Positives = 92/143 (64%)

Query: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
           M++F L+ ++QG+ RL K+Y      +R  +  E+++  L+R  + CSF+E++D K++Y+
Sbjct: 1   MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60

Query: 61  QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
           +YA+L+    +   +NE+   E IH +VE+LD+YF  V ELDI+FN +K + ILDE ++ 
Sbjct: 61  RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120

Query: 121 GCIVETNRARILAPLLILDKMSE 143
           G + +T++  +L  +   D + E
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQE 143


>gi|88703051 adaptor-related protein complex 1, sigma 3 subunit
           [Homo sapiens]
          Length = 154

 Score =  115 bits (289), Expect = 1e-26
 Identities = 52/144 (36%), Positives = 92/144 (63%)

Query: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
           MI F L+ ++QG+ RL K+Y  +   +R  +  E+++  LSR +   SF+++K+ KL+Y+
Sbjct: 1   MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYK 60

Query: 61  QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
           +YA+L+    + + +NE+   E +H +VE+LD+YF  V ELDI+FN +K + ILDE ++ 
Sbjct: 61  RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120

Query: 121 GCIVETNRARILAPLLILDKMSES 144
           G I ET++   +  +   D + E+
Sbjct: 121 GEIQETSKKIAVKAIEDSDMLQET 144


>gi|5031581 adaptor-related protein complex 3, sigma 2 subunit [Homo
           sapiens]
          Length = 193

 Score =  104 bits (260), Expect = 2e-23
 Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 6/150 (4%)

Query: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEY------KD 54
           MI+  L+ N  G+ RL ++Y+      +  +  E     L R +  C+F+E        D
Sbjct: 1   MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60

Query: 55  FKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIIL 114
           +KLIYR YA L+ V  V+ +E+E+ I + I  FVE LD+ F  V ELD++F++DKVH IL
Sbjct: 61  YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYIL 120

Query: 115 DEMVLNGCIVETNRARILAPLLILDKMSES 144
            E+V+ G ++ETN   I+A +   +++ +S
Sbjct: 121 QEVVMGGMVLETNMNEIVAQIEAQNRLEKS 150


>gi|4502861 adaptor-related protein complex 3, sigma 1 subunit [Homo
           sapiens]
          Length = 193

 Score =  104 bits (259), Expect = 3e-23
 Identities = 58/150 (38%), Positives = 86/150 (57%), Gaps = 6/150 (4%)

Query: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEY------KD 54
           MIK  L+ N  G+ RLSK+Y+    + +  +  E       R    C+F+E        D
Sbjct: 1   MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60

Query: 55  FKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIIL 114
            KLIYR YA L+ V  V+ +E+E+ I + I  FVE LD+ F  V ELD++F++DKVH IL
Sbjct: 61  NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNIL 120

Query: 115 DEMVLNGCIVETNRARILAPLLILDKMSES 144
            EMV+ G ++ETN   I+  +   +K+ +S
Sbjct: 121 AEMVMGGMVLETNMNEIVTQIDAQNKLEKS 150


>gi|11038643 adaptor-related protein complex 2, sigma 1 subunit
           isoform AP17delta [Homo sapiens]
          Length = 104

 Score = 71.2 bits (173), Expect = 3e-13
 Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 38/141 (26%)

Query: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
           MI+F L+ N+ G+TRL+K+Y   D +++  L  EV                         
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEV------------------------- 35

Query: 61  QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLN 120
                  VV V D ++         NFVEVL+EYF  V ELD++FN  KV+ ++DEM L 
Sbjct: 36  -----HAVVTVRDAKHT--------NFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 82

Query: 121 GCIVETNRARILAPLLILDKM 141
           G I ET++ ++L  LL+L  +
Sbjct: 83  GEIRETSQTKVLKQLLMLQSL 103


>gi|7705983 coatomer protein complex, subunit zeta 2 [Homo sapiens]
          Length = 210

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 31/134 (23%), Positives = 68/134 (50%), Gaps = 6/134 (4%)

Query: 2   IKFFLMVNKQGQTRLSKYYEHV--DINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIY 59
           IK   +++  G+  L+KYY+     + ++ + E  V     SR+  + +F  +    ++Y
Sbjct: 46  IKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT-SRTESEIAF--FGGMTIVY 102

Query: 60  RQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSR-VSELDIMFNLDKVHIILDEMV 118
           +    LF+ V  +  ENE+ +   +    E L+    + V +  ++ N+D   ++LDE+V
Sbjct: 103 KNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIV 162

Query: 119 LNGCIVETNRARIL 132
             G I+E++  +++
Sbjct: 163 DGGVILESDPQQVI 176


>gi|9506797 adaptor-related protein complex 1, mu 2 subunit [Homo
           sapiens]
          Length = 423

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 58  IYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEM 117
           ++ +++ L++V   +   N   +Y F++  +EV  EYF  + E  I  N   V+ +LDE+
Sbjct: 58  LWIKHSNLYLVATTSKNANASLVYSFLYKTIEVFCEYFKELEEESIRDNFVIVYELLDEL 117

Query: 118 VLNGCIVETNRARIL 132
           +  G   +T  ++IL
Sbjct: 118 MDFG-FPQTTDSKIL 131


>gi|6912240 adaptor-related protein complex 3, mu 1 subunit [Homo
           sapiens]
          Length = 418

 Score = 36.6 bits (83), Expect = 0.007
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 58  IYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEM 117
           IYR    LF V  +      + + EF+H   +   +YF   SE  I  N+  V+ +L+EM
Sbjct: 59  IYRD--KLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116

Query: 118 VLNGCIVETNRARILAPLL 136
           + NG  + T  + IL  L+
Sbjct: 117 LDNGFPLAT-ESNILKELI 134


>gi|46370095 adaptor-related protein complex 3, mu 1 subunit [Homo
           sapiens]
          Length = 418

 Score = 36.6 bits (83), Expect = 0.007
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 58  IYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEM 117
           IYR    LF V  +      + + EF+H   +   +YF   SE  I  N+  V+ +L+EM
Sbjct: 59  IYRD--KLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEM 116

Query: 118 VLNGCIVETNRARILAPLL 136
           + NG  + T  + IL  L+
Sbjct: 117 LDNGFPLAT-ESNILKELI 134


>gi|197209857 adaptor-related protein complex 3, mu 2 subunit [Homo
           sapiens]
          Length = 418

 Score = 36.2 bits (82), Expect = 0.010
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 58  IYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEM 117
           +YR    +F V  +      + + EF+H  V+   +YF   SE  I  N+  V+ +L+EM
Sbjct: 59  VYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEM 116

Query: 118 VLNGCIVETNRARILAPLL 136
           + NG  + T  + IL  L+
Sbjct: 117 LDNGFPLAT-ESNILKELI 134


>gi|5803000 adaptor-related protein complex 3, mu 2 subunit [Homo
           sapiens]
          Length = 418

 Score = 36.2 bits (82), Expect = 0.010
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 58  IYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEM 117
           +YR    +F V  +      + + EF+H  V+   +YF   SE  I  N+  V+ +L+EM
Sbjct: 59  VYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEM 116

Query: 118 VLNGCIVETNRARILAPLL 136
           + NG  + T  + IL  L+
Sbjct: 117 LDNGFPLAT-ESNILKELI 134


>gi|68799814 adaptor-related protein complex 2, mu 1 subunit isoform
           b [Homo sapiens]
          Length = 433

 Score = 35.4 bits (80), Expect = 0.017
 Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
           MI    + N +G+  +S+ Y   DI  R  ++   +    +R   +            + 
Sbjct: 1   MIGGLFIYNHKGEVLISRVYRD-DIG-RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV 58

Query: 61  QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMV 118
           + + +++        N   ++EF++   +V+  YF ++SE +I  N   ++ +LDE++
Sbjct: 59  KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEIL 116


>gi|14917109 adaptor-related protein complex 2, mu 1 subunit isoform
           a [Homo sapiens]
          Length = 435

 Score = 35.4 bits (80), Expect = 0.017
 Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 1   MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
           MI    + N +G+  +S+ Y   DI  R  ++   +    +R   +            + 
Sbjct: 1   MIGGLFIYNHKGEVLISRVYRD-DIG-RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV 58

Query: 61  QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMV 118
           + + +++        N   ++EF++   +V+  YF ++SE +I  N   ++ +LDE++
Sbjct: 59  KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEIL 116


>gi|11863154 archain isoform 1 [Homo sapiens]
          Length = 511

 Score = 34.3 bits (77), Expect = 0.037
 Identities = 22/92 (23%), Positives = 42/92 (45%)

Query: 40  LSRSNEQCSFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVS 99
           L  + +Q +F+E +  + +Y+    L++V+      N +   E +  F  V+ EY   + 
Sbjct: 39  LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98

Query: 100 ELDIMFNLDKVHIILDEMVLNGCIVETNRARI 131
           E +I  +   +    DE+V  G     N A+I
Sbjct: 99  ENEISEHCFDLIFAFDEIVALGYRENVNLAQI 130


>gi|194473724 adaptor-related protein complex 1, mu 1 subunit
           isoform 1 [Homo sapiens]
          Length = 435

 Score = 31.2 bits (69), Expect = 0.31
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 56  KLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILD 115
           + ++ ++  L++V           ++ F++  V+V  EYF  + E  I  N   ++ +LD
Sbjct: 56  RFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLD 115

Query: 116 EMV 118
           E++
Sbjct: 116 ELM 118


>gi|14210504 adaptor-related protein complex 1, mu 1 subunit isoform
           2 [Homo sapiens]
          Length = 423

 Score = 31.2 bits (69), Expect = 0.31
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 56  KLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILD 115
           + ++ ++  L++V           ++ F++  V+V  EYF  + E  I  N   ++ +LD
Sbjct: 56  RFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLD 115

Query: 116 EMV 118
           E++
Sbjct: 116 ELM 118


>gi|120433600 cyclic nucleotide gated channel alpha 3 isoform 2
           [Homo sapiens]
          Length = 676

 Score = 29.6 bits (65), Expect = 0.91
 Identities = 13/34 (38%), Positives = 24/34 (70%)

Query: 5   FLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKS 38
           F  V K  +TR+ ++++++  NK+T+ E EV+KS
Sbjct: 408 FRKVTKDLETRVIRWFDYLWANKKTVDEKEVLKS 441


>gi|4502917 cyclic nucleotide gated channel alpha 3 isoform 1 [Homo
           sapiens]
          Length = 694

 Score = 29.6 bits (65), Expect = 0.91
 Identities = 13/34 (38%), Positives = 24/34 (70%)

Query: 5   FLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKS 38
           F  V K  +TR+ ++++++  NK+T+ E EV+KS
Sbjct: 426 FRKVTKDLETRVIRWFDYLWANKKTVDEKEVLKS 459


>gi|11342664 myxovirus resistance protein 2 [Homo sapiens]
          Length = 715

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 42  RSNEQCSFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSEL 101
           R  E   F+ YK F++I  QY    +   ++  +  M I +    F+ V  ++F     L
Sbjct: 488 RGKELLGFVNYKTFEIIVHQYIQQLVEPALSMLQKAMEIIQ--QAFINVAKKHFGEFFNL 545

Query: 102 D 102
           +
Sbjct: 546 N 546


>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
           [Homo sapiens]
          Length = 759

 Score = 27.3 bits (59), Expect = 4.5
 Identities = 12/33 (36%), Positives = 23/33 (69%)

Query: 5   FLMVNKQGQTRLSKYYEHVDINKRTLLETEVIK 37
           F  V+K  + R+ K+++++  NK+T+ E EV+K
Sbjct: 492 FRNVSKDMEKRVIKWFDYLWTNKKTVDEKEVLK 524


>gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [Homo
           sapiens]
          Length = 690

 Score = 27.3 bits (59), Expect = 4.5
 Identities = 12/33 (36%), Positives = 23/33 (69%)

Query: 5   FLMVNKQGQTRLSKYYEHVDINKRTLLETEVIK 37
           F  V+K  + R+ K+++++  NK+T+ E EV+K
Sbjct: 423 FRNVSKDMEKRVIKWFDYLWTNKKTVDEKEVLK 455


>gi|224831262 calcium channel, voltage-dependent, beta 4 subunit
           isoform d [Homo sapiens]
          Length = 458

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 5   FLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYK-DFKLIYRQYA 63
           FL     G+  +++    + + KR++L     ++ + RSN + S  E + + + I+    
Sbjct: 245 FLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELAR 304

Query: 64  ALFIVVGVNDTENEMA 79
           +L +VV   DT N  A
Sbjct: 305 SLQLVVLDADTINHPA 320


>gi|54607068 calcium channel, voltage-dependent, beta 4 subunit
           isoform a [Homo sapiens]
          Length = 486

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 5   FLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYK-DFKLIYRQYA 63
           FL     G+  +++    + + KR++L     ++ + RSN + S  E + + + I+    
Sbjct: 211 FLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELAR 270

Query: 64  ALFIVVGVNDTENEMA 79
           +L +VV   DT N  A
Sbjct: 271 SLQLVVLDADTINHPA 286


>gi|54607066 calcium channel, voltage-dependent, beta 4 subunit
           isoform c [Homo sapiens]
          Length = 502

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 5   FLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYK-DFKLIYRQYA 63
           FL     G+  +++    + + KR++L     ++ + RSN + S  E + + + I+    
Sbjct: 227 FLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELAR 286

Query: 64  ALFIVVGVNDTENEMA 79
           +L +VV   DT N  A
Sbjct: 287 SLQLVVLDADTINHPA 302


>gi|54607064 calcium channel, voltage-dependent, beta 4 subunit
           isoform b [Homo sapiens]
          Length = 520

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 5   FLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYK-DFKLIYRQYA 63
           FL     G+  +++    + + KR++L     ++ + RSN + S  E + + + I+    
Sbjct: 245 FLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELAR 304

Query: 64  ALFIVVGVNDTENEMA 79
           +L +VV   DT N  A
Sbjct: 305 SLQLVVLDADTINHPA 320


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.140    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,141,528
Number of Sequences: 37866
Number of extensions: 142045
Number of successful extensions: 479
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 30
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.