Search of human proteins with 189027129

Search of human proteins with 189027129

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|189027129 phosphodiesterase 12 [Homo sapiens]
         (609 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|189027129 phosphodiesterase 12 [Homo sapiens]                     1238   0.0  
gi|28872863 CCR4-NOT transcription complex, subunit 6 [Homo sapi...   138   2e-32
gi|115583679 CCR4-NOT transcription complex, subunit 6-like [Hom...   136   6e-32
gi|31083028 CCR4 carbon catabolite repression 4-like [Homo sapiens]   103   4e-22
gi|36030946 LOC90806 protein [Homo sapiens]                           102   8e-22
gi|224282153 angel homolog 1 [Homo sapiens]                            99   9e-21
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...    32   1.3  
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...    32   1.3  
gi|153791662 coiled-coil domain containing 71 [Homo sapiens]           32   1.7  
gi|29029559 CSE1 chromosome segregation 1-like protein [Homo sap...    32   2.2  
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]       31   2.9  
gi|214010220 semaphorin 4D isoform 2 [Homo sapiens]                    31   3.8  
gi|214010218 semaphorin 4D isoform 1 [Homo sapiens]                    31   3.8  
gi|47519929 cell recognition molecule CASPR3 [Homo sapiens]            31   3.8  
gi|169184330 PREDICTED: novel protein similar to contactin assoc...    30   4.9  
gi|156104872 Ets2 repressor factor [Homo sapiens]                      30   4.9  
gi|20336726 ceramide kinase [Homo sapiens]                             30   6.5  
gi|183227691 proline dehydrogenase 1 [Homo sapiens]                    30   6.5  
gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2...    30   8.4  
gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1...    30   8.4  

>gi|189027129 phosphodiesterase 12 [Homo sapiens]
          Length = 609

 Score = 1238 bits (3202), Expect = 0.0
 Identities = 609/609 (100%), Positives = 609/609 (100%)

Query: 1   MWRLPGARAALRVIRTAVEKLSRAEAGSQTAAGAMERAVVRCVPSEPKLSLSFALADGSH 60
           MWRLPGARAALRVIRTAVEKLSRAEAGSQTAAGAMERAVVRCVPSEPKLSLSFALADGSH
Sbjct: 1   MWRLPGARAALRVIRTAVEKLSRAEAGSQTAAGAMERAVVRCVPSEPKLSLSFALADGSH 60

Query: 61  KNMQRDQSEPLGRVLSRIATNALKGHAKAAAAKKSRKSRPNASGGAACSGPGPEPAVFCE 120
           KNMQRDQSEPLGRVLSRIATNALKGHAKAAAAKKSRKSRPNASGGAACSGPGPEPAVFCE
Sbjct: 61  KNMQRDQSEPLGRVLSRIATNALKGHAKAAAAKKSRKSRPNASGGAACSGPGPEPAVFCE 120

Query: 121 PVVKLYYREEAVAEDVLNVDAWQDGAVLQIGDVKYKVERNPPAFTELQLPRYIMAGFPVC 180
           PVVKLYYREEAVAEDVLNVDAWQDGAVLQIGDVKYKVERNPPAFTELQLPRYIMAGFPVC
Sbjct: 121 PVVKLYYREEAVAEDVLNVDAWQDGAVLQIGDVKYKVERNPPAFTELQLPRYIMAGFPVC 180

Query: 181 PKLSLEFGDPASSLFRWYKEAKPGAAEPEVGVPSSLSPSSPSSSWTETDVEERVYTPSNA 240
           PKLSLEFGDPASSLFRWYKEAKPGAAEPEVGVPSSLSPSSPSSSWTETDVEERVYTPSNA
Sbjct: 181 PKLSLEFGDPASSLFRWYKEAKPGAAEPEVGVPSSLSPSSPSSSWTETDVEERVYTPSNA 240

Query: 241 DIGLRLKLHCTPGDGQRFGHSRELESVCVVEAGPGTCTFDHRHLYTKKVTEDALIRTVSY 300
           DIGLRLKLHCTPGDGQRFGHSRELESVCVVEAGPGTCTFDHRHLYTKKVTEDALIRTVSY
Sbjct: 241 DIGLRLKLHCTPGDGQRFGHSRELESVCVVEAGPGTCTFDHRHLYTKKVTEDALIRTVSY 300

Query: 301 NILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVICLQEVDRAVFSDS 360
           NILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVICLQEVDRAVFSDS
Sbjct: 301 NILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVICLQEVDRAVFSDS 360

Query: 361 LVPALEAFGLEGVFRIKQHEGLATFYRKSKFSLLSQHDISFYEALESDPLHKELLEKLVL 420
           LVPALEAFGLEGVFRIKQHEGLATFYRKSKFSLLSQHDISFYEALESDPLHKELLEKLVL
Sbjct: 361 LVPALEAFGLEGVFRIKQHEGLATFYRKSKFSLLSQHDISFYEALESDPLHKELLEKLVL 420

Query: 421 YPSAQEKVLQRSSVLQVSVLQSTKDSSKRICVANTHLYWHPKGGYIRLIQMAVALAHIRH 480
           YPSAQEKVLQRSSVLQVSVLQSTKDSSKRICVANTHLYWHPKGGYIRLIQMAVALAHIRH
Sbjct: 421 YPSAQEKVLQRSSVLQVSVLQSTKDSSKRICVANTHLYWHPKGGYIRLIQMAVALAHIRH 480

Query: 481 VSCDLYPGIPVIFCGDFNSTPSTGMYHFVINGSIPEDHEDWASNGEEERCNMSLTHFFKL 540
           VSCDLYPGIPVIFCGDFNSTPSTGMYHFVINGSIPEDHEDWASNGEEERCNMSLTHFFKL
Sbjct: 481 VSCDLYPGIPVIFCGDFNSTPSTGMYHFVINGSIPEDHEDWASNGEEERCNMSLTHFFKL 540

Query: 541 KSACGEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLPSHEEVTTHQALPSVSHPSDHI 600
           KSACGEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLPSHEEVTTHQALPSVSHPSDHI
Sbjct: 541 KSACGEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLPSHEEVTTHQALPSVSHPSDHI 600

Query: 601 ALVCDLKWK 609
           ALVCDLKWK
Sbjct: 601 ALVCDLKWK 609


>gi|28872863 CCR4-NOT transcription complex, subunit 6 [Homo
           sapiens]
          Length = 557

 Score =  138 bits (347), Expect = 2e-32
 Identities = 100/358 (27%), Positives = 168/358 (46%), Gaps = 48/358 (13%)

Query: 293 ALIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVICLQEV 352
           AL   + YN+L D YA  +     LY YC  +AL  DYR+  I +E+   NAD++ LQEV
Sbjct: 187 ALFSVMCYNVLCDKYATRQ-----LYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEV 241

Query: 353 DRAVFSDSLVPALEAFGLEGVFRIKQH------------EGLATFYRKSKFSLLSQHDIS 400
           +   +    +  L+  G  G F  K              +G A F++  KF+L+ +H + 
Sbjct: 242 ETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 301

Query: 401 FYE-ALESDPLHKELLEKLVLYPSAQEKV---LQRSSVLQVSVLQSTKDSSKRICVANTH 456
           F + A+ +    + +L +++   +    V   L++ S+   S         + I VAN H
Sbjct: 302 FNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKESIEMPSGKPHLGTEKQLILVANAH 361

Query: 457 LYWHPKGGYIRLIQMAVALAHIRHV----SCDL-------YPGIPVIFCGDFNSTPSTGM 505
           ++W P+   ++L+Q  + L+ ++++    S +L       +  IP++ C D NS P +G+
Sbjct: 362 MHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLKSSVLGEFGTIPLVLCADLNSLPDSGV 421

Query: 506 YHFVINGSIPEDHED------------WASNGEEERCNMSLTHFFKLKSA--CGEPAYTN 551
             ++  G +  +H+D            ++ +G+    N  +TH FKL+SA   G   YTN
Sbjct: 422 VEYLSTGGVETNHKDFKELRYNESLTNFSCHGKNGTTNGRITHGFKLQSAYESGLMPYTN 481

Query: 552 YVGGFHGCLDYIFIDLNALEVEQVI-PLPSHEEVTTH-QALPSVSHPSDHIALVCDLK 607
           Y   F G +DYIF     L    ++ PL  H  V  +    P    PSDH +L   L+
Sbjct: 482 YTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQLE 539


>gi|115583679 CCR4-NOT transcription complex, subunit 6-like [Homo
           sapiens]
          Length = 555

 Score =  136 bits (342), Expect = 6e-32
 Identities = 99/361 (27%), Positives = 169/361 (46%), Gaps = 46/361 (12%)

Query: 288 KVTEDALIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVI 347
           ++   A    + YN+L D YA  +     LY YC  +AL  +YR+  I +E+   +AD+I
Sbjct: 182 QILPSASFTVMCYNVLCDKYATRQ-----LYGYCPSWALNWEYRKKGIMEEIVNCDADII 236

Query: 348 CLQEVDRAVFSDSLVPALEAFGLEGVFRIKQH------------EGLATFYRKSKFSLLS 395
            LQEV+   +    +PAL+  G +G F  K              +G A F++  KF+L+ 
Sbjct: 237 SLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQ 296

Query: 396 QHDISFYEALESDPLHKELLEKLVLYPS--AQEKVLQRSSVLQVSVLQSTKDSSKR-ICV 452
           +H + F +   ++    E +   V+         VL+    L  + ++    + K+ + V
Sbjct: 297 KHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIV 356

Query: 453 ANTHLYWHPKGGYIRLIQMAVALAHIRHV--SCDLYPG--------IPVIFCGDFNSTPS 502
           AN H++W P+   ++LIQ  + ++ ++++       PG        IP++ C D NS P 
Sbjct: 357 ANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPD 416

Query: 503 TGMYHFVINGSIPEDHED------------WASNGEEERCNMSLTHFFKLKSACGE--PA 548
           +G+  ++ NG + ++H+D            ++ NG+       +TH F+LKSA       
Sbjct: 417 SGVVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMP 476

Query: 549 YTNYVGGFHGCLDYIFIDLNALEVEQVI-PLPSHEEVTTH-QALPSVSHPSDHIALVCDL 606
           YTNY   F G +DYIF     + V  V+ PL     V  +    P    PSDH +L+  L
Sbjct: 477 YTNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQL 536

Query: 607 K 607
           +
Sbjct: 537 E 537


>gi|31083028 CCR4 carbon catabolite repression 4-like [Homo sapiens]
          Length = 431

 Score =  103 bits (258), Expect = 4e-22
 Identities = 92/334 (27%), Positives = 154/334 (46%), Gaps = 73/334 (21%)

Query: 295 IRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVICLQEVDR 354
           IR + +NILA    + + +    +  C   AL+ + R+ LI +E+  Y  D++CLQEVD 
Sbjct: 143 IRVMQWNILAQALGEGKDN----FVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDH 198

Query: 355 AVFSDSLVPALEAFGLEGVFRIK--------QH----EGLATFYRKSKFSLLSQHDISFY 402
             + D+  P L   G +G F  K        +H    +G A F+ +++F L++  +I   
Sbjct: 199 --YFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIR-- 254

Query: 403 EALESDPLHKELLEKLVLYPSAQEKVLQRSSVLQVSVLQST--KDSSKRICVANTHLYWH 460
                       L  + L  +            QV++ Q+   K+S ++ C+A THL   
Sbjct: 255 ------------LTAMTLKTN------------QVAIAQTLECKESGRQFCIAVTHLKAR 290

Query: 461 PKGGYIRLIQMAVALAHIRHVSCDLYPGIPVIFCGDFNSTPSTGMYHFVINGSIPEDHED 520
                 R  Q    L ++++++      IP+I CGDFN+ P+  +Y    + S+      
Sbjct: 291 TGWERFRSAQGCDLLQNLQNITQGAK--IPLIVCGDFNAEPTEEVYKHFASSSL------ 342

Query: 521 WASNGEEERCNMSLTHFFKLKSACG--EPAYTNYV----GGFHGCLDYIFIDLNALEVEQ 574
                       +L   +KL SA G  EP YT +     G     LDYI+   +AL V  
Sbjct: 343 ------------NLNSAYKLLSADGQSEPPYTTWKIRTSGECRHTLDYIWYSKHALNVRS 390

Query: 575 VIPLPSHEEVTTHQALPSVSHPSDHIALVCDLKW 608
            + L + E++  ++ LPS ++PSDH++LVCD  +
Sbjct: 391 ALDLLTEEQIGPNR-LPSFNYPSDHLSLVCDFSF 423


>gi|36030946 LOC90806 protein [Homo sapiens]
          Length = 544

 Score =  102 bits (255), Expect = 8e-22
 Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 29/223 (13%)

Query: 298 VSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVICLQEVDRAVF 357
           +SYNIL+    +     + LY +C    L   +R   I KE+  ++ADV+CLQEV    +
Sbjct: 170 MSYNILSQDLLE---DNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQEDHY 226

Query: 358 SDSLVPALEAFGLEGVFRI---KQHEGLATFYRKSKFSLLSQHDISFYEALESDPLHKEL 414
              + P+LE+ G    +++   ++ +G A  ++ SKFSLLS + + F+            
Sbjct: 227 GAEIRPSLESLGYHCEYKMRTGRKPDGCAICFKHSKFSLLSVNPVEFFR----------- 275

Query: 415 LEKLVLYPSAQEKVLQRSSVLQVSVLQS--TKDSSKRICVANTHLYWHPKGGYIRLIQMA 472
                        +L R +V  V +LQ      +   ICVANTHL ++P+ G I+L Q+A
Sbjct: 276 ---------PDISLLDRDNVGLVLLLQPKIPYAACPAICVANTHLLYNPRRGDIKLTQLA 326

Query: 473 VALAHIRHVSCDLYPGI-PVIFCGDFNSTPSTGMYHFVINGSI 514
           + LA I  V+        P++ CGDFNS P + +Y F+  G +
Sbjct: 327 MLLAEISSVAHQKDGSFCPIVMCGDFNSVPGSPLYSFIKEGKL 369


>gi|224282153 angel homolog 1 [Homo sapiens]
          Length = 670

 Score = 99.4 bits (246), Expect = 9e-21
 Identities = 74/241 (30%), Positives = 120/241 (49%), Gaps = 32/241 (13%)

Query: 298 VSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVICLQEVDRAVF 357
           +SYNILA    Q     + LY +C P  L  +YR   + +E   ++ D++CLQEV    +
Sbjct: 248 MSYNILAQDLMQQS---SELYLHCHPDILNWNYRFVNLMQEFQHWDPDILCLQEVQEDHY 304

Query: 358 SDSLVPALEAFGLEGVFRIK---QHEGLATFYRKSKFSLLSQHDISFY----EALESDPL 410
            + L P+L   G    ++ +   + +G A  Y+ ++F LL    + ++    E L  D +
Sbjct: 305 WEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNV 364

Query: 411 HKELLEKLVLYPSAQEKVLQRSSVLQVSVLQSTKDSSKRICVANTHLYWHPKGGYIRLIQ 470
              LL    L P   E       + QVSV          +CVANTH+ ++P+ G ++L Q
Sbjct: 365 GLVLL----LQPLVPE------GLGQVSVAP--------LCVANTHILYNPRRGDVKLAQ 406

Query: 471 MAVALAHIRHVSCDLYPG--IPVIFCGDFNSTPSTGMYHFVINGSIP-EDHEDWASNGEE 527
           MA+ LA +  V+  L  G   P+I CGD NS P + +Y+F+ +G +       W  +G+E
Sbjct: 407 MAILLAEVDKVA-RLSDGSHCPIILCGDLNSVPDSPLYNFIRDGELQYHGMPAWKVSGQE 465

Query: 528 E 528
           +
Sbjct: 466 D 466


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 12  RVIRTAVEKLSRAEAGSQTAAGAMERAVVRCVPSEPKLSLSFALADGSHKNMQRDQSEPL 71
           R +   ++KLS+A A         ++     +  E    L     +G  K + + +   L
Sbjct: 467 RSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRL 526

Query: 72  GRVLSRI------ATNALKGHAKAAAAKKSRKSR-------PNASGGAACSGPGPEP 115
             +L +        TN +  H +A AAK+ +K R        NA GG +  GP  EP
Sbjct: 527 AYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEP 583


>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 12  RVIRTAVEKLSRAEAGSQTAAGAMERAVVRCVPSEPKLSLSFALADGSHKNMQRDQSEPL 71
           R +   ++KLS+A A         ++     +  E    L     +G  K + + +   L
Sbjct: 467 RSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRL 526

Query: 72  GRVLSRI------ATNALKGHAKAAAAKKSRKSR-------PNASGGAACSGPGPEP 115
             +L +        TN +  H +A AAK+ +K R        NA GG +  GP  EP
Sbjct: 527 AYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEP 583


>gi|153791662 coiled-coil domain containing 71 [Homo sapiens]
          Length = 467

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 13/103 (12%)

Query: 7   ARAALRVIRTAVEKLSRAEAGSQTA-AGAMERAVVRCVPSEPKLSLSFALADGSHKNMQR 65
           ARA  +V RT   K ++A A ++ A   A  +A    V ++ K+  ++A A    K ++ 
Sbjct: 293 ARAQAKVARTQA-KAAKARAKAKAAQVKAKAKAKAAQVKAKAKVMAAWAKAKAKAKAVRA 351

Query: 66  D----QSEPLGRVLSRIATNALKGHAKAAAAKKSRKSRPNASG 104
                +++P GR          KG AKA   +K +K+RP   G
Sbjct: 352 KAKVARTQPRGR-------GRPKGSAKARTTRKGQKNRPETVG 387


>gi|29029559 CSE1 chromosome segregation 1-like protein [Homo
           sapiens]
          Length = 971

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 20/135 (14%)

Query: 382 LATFYRKSKFSLLSQHDISFYEALESDPLHKELLEKLVLYPSAQEKVLQRSSVLQVSVLQ 441
           L T  ++ K+ LL  + I F  ++   P +K L E      S  EKV+  +   + +  +
Sbjct: 301 LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMEFRAADEE 360

Query: 442 STKDSSKRICVANTHLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIPVIFCGDFNSTP 501
           + +D+S+                YIR       +   R  +CDL  G+   F G     P
Sbjct: 361 AFEDNSEE---------------YIRRDLEGSDIDTRRRAACDLVRGLCKFFEG-----P 400

Query: 502 STGMYHFVINGSIPE 516
            TG++   +N  + E
Sbjct: 401 VTGIFSGYVNSMLQE 415


>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
          Length = 2217

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 59   SHKNMQRDQSEPLGRVLSRIATNALKGHAKAAAAKKSRKSRPNASGGAACSGPGPEPAVF 118
            S +   +  S+P  R LS   + ++    K     K   SR + S  A    PGP+PA+ 
Sbjct: 2047 SERVTYKSSSKPRARFLSGPVSVSIWSALKRLCLGKEHSSRSSTSSLAPGPEPGPQPALH 2106

Query: 119  CEPVVKLYYREEAVAEDVLN--VDAWQDGAV 147
             +  V     ++    D L+  VD W    V
Sbjct: 2107 VQAQVNNSNNKKGTFTDDLHKLVDEWTSKTV 2137


>gi|214010220 semaphorin 4D isoform 2 [Homo sapiens]
          Length = 738

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 271 EAGPGTCTFDHRHLYTKKVTEDALIRTVSYNIL 303
           E G G C FD  H YT  + +  L    SYN L
Sbjct: 150 EDGKGRCPFDPAHSYTSVMVDGELYSGTSYNFL 182


>gi|214010218 semaphorin 4D isoform 1 [Homo sapiens]
          Length = 862

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 271 EAGPGTCTFDHRHLYTKKVTEDALIRTVSYNIL 303
           E G G C FD  H YT  + +  L    SYN L
Sbjct: 150 EDGKGRCPFDPAHSYTSVMVDGELYSGTSYNFL 182


>gi|47519929 cell recognition molecule CASPR3 [Homo sapiens]
          Length = 1288

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 87   AKAAAAKKSRKSRPNASGGAACSGPGPEPAVFCEPVVKLYYREEAVAEDVLNV 139
            A AA+   +R+  P  +GGA  SGP  E     EP+V    R+ AV   V+ V
Sbjct: 1205 AGAASGSPARELAPRLAGGAGRSGPADEG----EPLVNADRRDSAVIGGVIAV 1253


>gi|169184330 PREDICTED: novel protein similar to contactin
           associated protein-like 3 (CNTNAP3) [Homo sapiens]
          Length = 291

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 87  AKAAAAKKSRKSRPNASGGAACSGPGPEPAVFCEPVVKLYYREEAVAEDVLNVD 140
           A AA+   +R+  P  +GGA  SGP  E     EP+V    R+ AV   V+ V+
Sbjct: 208 AGAASGSPARELAPRLAGGAGRSGPVDEG----EPLVNADRRDSAVIGGVIAVE 257


>gi|156104872 Ets2 repressor factor [Homo sapiens]
          Length = 548

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 67  QSEPLGRVLSRIATNALKGHAKAAAAKKSRKSRPNASGGAACSGPGPEPAVFCEPVVKLY 126
           Q  PLGR        A    A A A K    +   A G  A + P P P +  EP+ +  
Sbjct: 380 QPPPLGR-----RQRAAGEKAVAGADKSGGSAGGLAEGAGALAPPPPPPQIKVEPISE-G 433

Query: 127 YREEAVAEDVLNVDAWQDGAVLQIGDVKYKVERNPPA 163
             EE    D+ + D  +DG V       +K  R PPA
Sbjct: 434 ESEEVEVTDISDEDE-EDGEV-------FKTPRAPPA 462


>gi|20336726 ceramide kinase [Homo sapiens]
          Length = 537

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 189 DPASSLFRWYKEAKPGAAEPEVGVPSSLSPSSPSSSWTETDV 230
           +PA +L RW++   PGA  P  G  +   P S   +  ETDV
Sbjct: 26  EPARALLRWWRSPGPGAGAP--GADACSVPVSEIIAVEETDV 65


>gi|183227691 proline dehydrogenase 1 [Homo sapiens]
          Length = 600

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 547 PAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLPSHEEVTTHQALPSVS----HPSDH 599
           P Y      +H CLDY+  +L     +  + + SH E T   AL  +     HP+DH
Sbjct: 465 PTYEATNAMYHRCLDYVLEELKH-NAKAKVMVASHNEDTVRFALRRMEELGLHPADH 520


>gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2
            [Homo sapiens]
          Length = 1207

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 87   AKAAAAKKSRKSRPNASGGAACSGPGPEPAVFCEPVVKLYYREEAVAEDVLNV 139
            A AA+   +R+  P  +GGA  SGP  E     EP+V    R+ AV   V+ V
Sbjct: 1124 AGAASGSPARELAPRLAGGAGRSGPVDEG----EPLVNADRRDSAVMGGVIAV 1172


>gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1
            [Homo sapiens]
          Length = 1288

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 87   AKAAAAKKSRKSRPNASGGAACSGPGPEPAVFCEPVVKLYYREEAVAEDVLNV 139
            A AA+   +R+  P  +GGA  SGP  E     EP+V    R+ AV   V+ V
Sbjct: 1205 AGAASGSPARELAPRLAGGAGRSGPVDEG----EPLVNADRRDSAVMGGVIAV 1253


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,091,249
Number of Sequences: 37866
Number of extensions: 1184981
Number of successful extensions: 3740
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3705
Number of HSP's gapped (non-prelim): 29
length of query: 609
length of database: 18,247,518
effective HSP length: 108
effective length of query: 501
effective length of database: 14,157,990
effective search space: 7093152990
effective search space used: 7093152990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.