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Search of human proteins with 189027124
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|189027124 nicotinamide riboside kinase 1 isoform 2 [Homo
sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|189027124 nicotinamide riboside kinase 1 isoform 2 [Homo sapi... 358 1e-99
gi|8923530 nicotinamide riboside kinase 1 isoform 1 [Homo sapiens] 343 6e-95
gi|24762248 integrin beta 1 binding protein 3 [Homo sapiens] 167 6e-42
gi|119226227 NEDD4 binding protein 2-like 1 isoform 2 [Homo sapi... 37 0.009
gi|119226224 NEDD4 binding protein 2-like 1 isoform 1 [Homo sapi... 37 0.009
gi|209863022 uridine-cytidine kinase 1 isoform b [Homo sapiens] 34 0.057
gi|13899253 uridine-cytidine kinase 1 isoform a [Homo sapiens] 34 0.057
gi|57863312 uridine-cytidine kinase 1-like 1 [Homo sapiens] 33 0.16
gi|31742492 Nedd4 binding protein 2 [Homo sapiens] 32 0.22
gi|30794372 polybromo 1 isoform 1 [Homo sapiens] 32 0.22
gi|93102371 polybromo 1 isoform 2 [Homo sapiens] 32 0.22
gi|41281917 polybromo 1 isoform 4 [Homo sapiens] 32 0.22
gi|149193331 tripartite motif protein 15 [Homo sapiens] 28 4.1
gi|18699734 uridine-cytidine kinase 2 [Homo sapiens] 28 4.1
gi|241982689 ADP-ribosylation factor-like 13 isoform b [Homo sap... 27 6.9
gi|241982687 ADP-ribosylation factor-like 13 isoform a [Homo sap... 27 6.9
gi|124248533 ADP-ribosylation factor-like 13 isoform a [Homo sap... 27 6.9
gi|22212943 ubiquitin-conjugating enzyme UBC3B [Homo sapiens] 27 6.9
gi|7656971 phosphonoformate immuno-associated protein 5 isoform ... 27 6.9
gi|205277394 coenzyme A synthase isoform c [Homo sapiens] 27 9.0
gi|110227607 coenzyme A synthase isoform b [Homo sapiens] 27 9.0
gi|110227605 coenzyme A synthase isoform a [Homo sapiens] 27 9.0
gi|110227601 coenzyme A synthase isoform a [Homo sapiens] 27 9.0
gi|110227603 coenzyme A synthase isoform a [Homo sapiens] 27 9.0
>gi|189027124 nicotinamide riboside kinase 1 isoform 2 [Homo
sapiens]
Length = 175
Score = 358 bits (919), Expect = 1e-99
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEA 60
MKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEA
Sbjct: 1 MKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEA 60
Query: 61 LNMEKMMSAISCWMESARHSVVSTDQESAEEIPILIIEGFLLFNYNTRVYQPPDSPGYFD 120
LNMEKMMSAISCWMESARHSVVSTDQESAEEIPILIIEGFLLFNYNTRVYQPPDSPGYFD
Sbjct: 61 LNMEKMMSAISCWMESARHSVVSTDQESAEEIPILIIEGFLLFNYNTRVYQPPDSPGYFD 120
Query: 121 GHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQELAKQKCLQVTA 175
GHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQELAKQKCLQVTA
Sbjct: 121 GHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQELAKQKCLQVTA 175
>gi|8923530 nicotinamide riboside kinase 1 isoform 1 [Homo sapiens]
Length = 199
Score = 343 bits (879), Expect = 6e-95
Identities = 174/199 (87%), Positives = 175/199 (87%), Gaps = 24/199 (12%)
Query: 1 MKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEA 60
MKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEA
Sbjct: 1 MKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEA 60
Query: 61 LNMEKMMSAISCWMESARHSVVSTDQESAEEIPILIIEGFLLFNY--------------- 105
LNMEKMMSAISCWMESARHSVVSTDQESAEEIPILIIEGFLLFNY
Sbjct: 61 LNMEKMMSAISCWMESARHSVVSTDQESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTI 120
Query: 106 ---------NTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQ 156
+TRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQ
Sbjct: 121 PYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQ 180
Query: 157 VYEDLIQELAKQKCLQVTA 175
VYEDLIQELAKQKCLQVTA
Sbjct: 181 VYEDLIQELAKQKCLQVTA 199
>gi|24762248 integrin beta 1 binding protein 3 [Homo sapiens]
Length = 230
Score = 167 bits (422), Expect = 6e-42
Identities = 91/189 (48%), Positives = 115/189 (60%), Gaps = 29/189 (15%)
Query: 5 IIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNME 64
I+GI G+TN GKTTL +L + LPNC VI QDDFFKP+ +I ++GF Q+DVLE+L+ME
Sbjct: 4 IVGIGGMTNGGKTTLTNSLLRALPNCCVIHQDDFFKPQDQIAVGEDGFKQWDVLESLDME 63
Query: 65 KMMSAISCWMES----ARHSVVSTDQESAEEIPILIIEGFLLFNY--------------- 105
M+ + W+ S AR VS Q A + IL++EGFLL++Y
Sbjct: 64 AMLDTVQAWLSSPQKFARAHGVSV-QPEASDTHILLLEGFLLYSYKPLVDLYSRRYFLTV 122
Query: 106 ---------NTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQ 156
+TR Y PD PG FDGHVWPMY KYRQEM+ EVVYLDG KS E+LF +
Sbjct: 123 PYEECKWRRSTRNYTVPDPPGLFDGHVWPMYQKYRQEMEANGVEVVYLDGMKSREELFRE 182
Query: 157 VYEDLIQEL 165
V ED+ L
Sbjct: 183 VLEDIQNSL 191
>gi|119226227 NEDD4 binding protein 2-like 1 isoform 2 [Homo
sapiens]
Length = 173
Score = 37.0 bits (84), Expect = 0.009
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 8 ISGVTNSGKTTLAKNLQKHLPNCSVISQDDFF 39
+ G+ SGKTTLA+ LQ P + S DDFF
Sbjct: 47 LRGLPGSGKTTLARQLQHDFPRALIFSTDDFF 78
>gi|119226224 NEDD4 binding protein 2-like 1 isoform 1 [Homo
sapiens]
Length = 243
Score = 37.0 bits (84), Expect = 0.009
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 8 ISGVTNSGKTTLAKNLQKHLPNCSVISQDDFF 39
+ G+ SGKTTLA+ LQ P + S DDFF
Sbjct: 47 LRGLPGSGKTTLARQLQHDFPRALIFSTDDFF 78
>gi|209863022 uridine-cytidine kinase 1 isoform b [Homo sapiens]
Length = 201
Score = 34.3 bits (77), Expect = 0.057
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 20/122 (16%)
Query: 2 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSV---------ISQDDFFKPESEIETDK--N 50
+ F+IG+SG T SGK+T+ + + + L V +SQD F+K + + K
Sbjct: 22 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALK 81
Query: 51 GFLQYDVLEALNMEKMMSAISCWMESARHSVVSTDQESAEEIP---------ILIIEGFL 101
G +D +A + + M + +E V + D + +P +++ EG L
Sbjct: 82 GQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGIL 141
Query: 102 LF 103
+F
Sbjct: 142 VF 143
>gi|13899253 uridine-cytidine kinase 1 isoform a [Homo sapiens]
Length = 277
Score = 34.3 bits (77), Expect = 0.057
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 20/122 (16%)
Query: 2 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSV---------ISQDDFFKPESEIETDK--N 50
+ F+IG+SG T SGK+T+ + + + L V +SQD F+K + + K
Sbjct: 22 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALK 81
Query: 51 GFLQYDVLEALNMEKMMSAISCWMESARHSVVSTDQESAEEIP---------ILIIEGFL 101
G +D +A + + M + +E V + D + +P +++ EG L
Sbjct: 82 GQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGIL 141
Query: 102 LF 103
+F
Sbjct: 142 VF 143
>gi|57863312 uridine-cytidine kinase 1-like 1 [Homo sapiens]
Length = 548
Score = 32.7 bits (73), Expect = 0.16
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 2 KTFIIGISGVTNSGKTTLAKNLQKHL--PNCSVISQDDFFK--PESEIETDKNGFLQYDV 57
+ F IG+ G + SGKTT+A+ + + L P ++S D F+K E + E + +D
Sbjct: 97 EAFAIGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTEQQQEQAAHNNFNFDH 156
Query: 58 LEALNMEKMMSAI 70
+A + + ++S +
Sbjct: 157 PDAFDFDLIISTL 169
>gi|31742492 Nedd4 binding protein 2 [Homo sapiens]
Length = 1770
Score = 32.3 bits (72), Expect = 0.22
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 5 IIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETD 48
++ + G+ SGK+ LA+ LQ+ P+ ++S DD+F + + D
Sbjct: 442 LVLLRGLPGSGKSFLARTLQEDNPSGVILSTDDYFYINGQYQFD 485
>gi|30794372 polybromo 1 isoform 1 [Homo sapiens]
Length = 1602
Score = 32.3 bits (72), Expect = 0.22
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 87 ESAEEIPILIIEGFLLFNYNTRVYQPPDSPGYFDG-HVWPMYLKYRQE 133
E +++ +L + LLFN N + Y PDSP Y +W +YL+ R E
Sbjct: 104 EEYDDVNLLTADFQLLFN-NAKSYYKPDSPEYKAACKLWDLYLRTRNE 150
>gi|93102371 polybromo 1 isoform 2 [Homo sapiens]
Length = 1582
Score = 32.3 bits (72), Expect = 0.22
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 87 ESAEEIPILIIEGFLLFNYNTRVYQPPDSPGYFDG-HVWPMYLKYRQE 133
E +++ +L + LLFN N + Y PDSP Y +W +YL+ R E
Sbjct: 104 EEYDDVNLLTADFQLLFN-NAKSYYKPDSPEYKAACKLWDLYLRTRNE 150
>gi|41281917 polybromo 1 isoform 4 [Homo sapiens]
Length = 1582
Score = 32.3 bits (72), Expect = 0.22
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 87 ESAEEIPILIIEGFLLFNYNTRVYQPPDSPGYFDG-HVWPMYLKYRQE 133
E +++ +L + LLFN N + Y PDSP Y +W +YL+ R E
Sbjct: 104 EEYDDVNLLTADFQLLFN-NAKSYYKPDSPEYKAACKLWDLYLRTRNE 150
>gi|149193331 tripartite motif protein 15 [Homo sapiens]
Length = 465
Score = 28.1 bits (61), Expect = 4.1
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 15/70 (21%)
Query: 117 GYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQV---------------YEDL 161
G+ D + P + R ++ ++ E ++ K +ED LQV +E L
Sbjct: 117 GFLDEAIQPYRDRLRSRLEALSTERDEIEDVKCQEDQKLQVLLTQIESKKHQVETAFERL 176
Query: 162 IQELAKQKCL 171
QEL +Q+CL
Sbjct: 177 QQELEQQRCL 186
>gi|18699734 uridine-cytidine kinase 2 [Homo sapiens]
Length = 261
Score = 28.1 bits (61), Expect = 4.1
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 20/120 (16%)
Query: 4 FIIGISGVTNSGKTTLAKNLQKHL---------PNCSVISQDDFFKPESEIETDK--NGF 52
F+IG+SG T SGK+++ + + L ++SQD F++ + + K G
Sbjct: 21 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQ 80
Query: 53 LQYDVLEALNMEKMMSAISCWMESARHSVV-------STDQESAEEIP--ILIIEGFLLF 103
+D +A + E ++ + E + S +E+ P +++ EG L F
Sbjct: 81 FNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAF 140
>gi|241982689 ADP-ribosylation factor-like 13 isoform b [Homo
sapiens]
Length = 256
Score = 27.3 bits (59), Expect = 6.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 6 IGISGVTNSGKTTLAKNLQKHLPN 29
I I G+ NSGKT L + QK LP+
Sbjct: 24 IPIIGLNNSGKTVLVEAFQKLLPS 47
>gi|241982687 ADP-ribosylation factor-like 13 isoform a [Homo
sapiens]
Length = 290
Score = 27.3 bits (59), Expect = 6.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 6 IGISGVTNSGKTTLAKNLQKHLPN 29
I I G+ NSGKT L + QK LP+
Sbjct: 24 IPIIGLNNSGKTVLVEAFQKLLPS 47
>gi|124248533 ADP-ribosylation factor-like 13 isoform a [Homo
sapiens]
Length = 290
Score = 27.3 bits (59), Expect = 6.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 6 IGISGVTNSGKTTLAKNLQKHLPN 29
I I G+ NSGKT L + QK LP+
Sbjct: 24 IPIIGLNNSGKTVLVEAFQKLLPS 47
>gi|22212943 ubiquitin-conjugating enzyme UBC3B [Homo sapiens]
Length = 238
Score = 27.3 bits (59), Expect = 6.9
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 83 STDQESAEEIPILIIEGFLLFNYNTRVYQPPDS---PGYFDGHV 123
S +E E I +++ L+N+ ++ PP++ GYF H+
Sbjct: 19 SLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHI 62
>gi|7656971 phosphonoformate immuno-associated protein 5 isoform 2
[Homo sapiens]
Length = 583
Score = 27.3 bits (59), Expect = 6.9
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 1 MKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFF 39
++ +I + G+ SGKTTL++ L + V S DD+F
Sbjct: 400 LQKLLILLRGLPGSGKTTLSRILLGQNRDGIVFSTDDYF 438
>gi|205277394 coenzyme A synthase isoform c [Homo sapiens]
Length = 593
Score = 26.9 bits (58), Expect = 9.0
Identities = 8/21 (38%), Positives = 19/21 (90%)
Query: 4 FIIGISGVTNSGKTTLAKNLQ 24
++IG++G++ SGK+++A+ L+
Sbjct: 388 YVIGLTGISGSGKSSIAQRLK 408
>gi|110227607 coenzyme A synthase isoform b [Homo sapiens]
Length = 269
Score = 26.9 bits (58), Expect = 9.0
Identities = 8/21 (38%), Positives = 19/21 (90%)
Query: 4 FIIGISGVTNSGKTTLAKNLQ 24
++IG++G++ SGK+++A+ L+
Sbjct: 64 YVIGLTGISGSGKSSIAQRLK 84
>gi|110227605 coenzyme A synthase isoform a [Homo sapiens]
Length = 564
Score = 26.9 bits (58), Expect = 9.0
Identities = 8/21 (38%), Positives = 19/21 (90%)
Query: 4 FIIGISGVTNSGKTTLAKNLQ 24
++IG++G++ SGK+++A+ L+
Sbjct: 359 YVIGLTGISGSGKSSIAQRLK 379
>gi|110227601 coenzyme A synthase isoform a [Homo sapiens]
Length = 564
Score = 26.9 bits (58), Expect = 9.0
Identities = 8/21 (38%), Positives = 19/21 (90%)
Query: 4 FIIGISGVTNSGKTTLAKNLQ 24
++IG++G++ SGK+++A+ L+
Sbjct: 359 YVIGLTGISGSGKSSIAQRLK 379
>gi|110227603 coenzyme A synthase isoform a [Homo sapiens]
Length = 564
Score = 26.9 bits (58), Expect = 9.0
Identities = 8/21 (38%), Positives = 19/21 (90%)
Query: 4 FIIGISGVTNSGKTTLAKNLQ 24
++IG++G++ SGK+++A+ L+
Sbjct: 359 YVIGLTGISGSGKSSIAQRLK 379
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,528,071
Number of Sequences: 37866
Number of extensions: 265786
Number of successful extensions: 814
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 32
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.