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Search of human proteins with 188536100
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|188536100 cryptochrome 2 (photolyase-like) isoform 1 [Homo
sapiens]
(614 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|188536100 cryptochrome 2 (photolyase-like) isoform 1 [Homo sa... 1269 0.0
gi|188536103 cryptochrome 2 (photolyase-like) isoform 2 [Homo sa... 1079 0.0
gi|4758072 cryptochrome 1 (photolyase-like) [Homo sapiens] 889 0.0
gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens] 37 0.053
gi|150170670 piccolo isoform 2 [Homo sapiens] 35 0.20
gi|150378539 piccolo isoform 1 [Homo sapiens] 35 0.20
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap... 35 0.20
gi|112421108 capicua homolog [Homo sapiens] 35 0.27
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 34 0.45
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 33 0.59
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.59
gi|223718196 perilipin [Homo sapiens] 33 1.0
gi|223718203 perilipin [Homo sapiens] 33 1.0
gi|149193327 mucin 20 isoform S [Homo sapiens] 32 1.3
gi|149193325 mucin 20 isoform L [Homo sapiens] 32 1.3
gi|187281580 meckelin isoform 1 [Homo sapiens] 32 1.7
gi|42475941 zinc finger protein 261 [Homo sapiens] 32 1.7
gi|4827067 zinc finger protein 261 [Homo sapiens] 32 1.7
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens] 32 1.7
gi|21265052 ADAM metallopeptidase with thrombospondin type 1 mot... 32 1.7
gi|110611167 ADAM metallopeptidase with thrombospondin type 1 mo... 32 1.7
gi|55956914 myosin binding protein H [Homo sapiens] 32 2.2
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho... 31 2.9
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho... 31 2.9
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho... 31 2.9
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom... 31 2.9
gi|239756307 PREDICTED: similar to ubiquitin-associated protein ... 31 2.9
gi|239750857 PREDICTED: similar to ubiquitin-associated protein ... 31 2.9
gi|239745220 PREDICTED: hypothetical protein [Homo sapiens] 31 2.9
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 31 2.9
>gi|188536100 cryptochrome 2 (photolyase-like) isoform 1 [Homo
sapiens]
Length = 614
Score = 1269 bits (3283), Expect = 0.0
Identities = 614/614 (100%), Positives = 614/614 (100%)
Query: 1 MGGVHVAYRGGAGVAGAVWTVMAATVATAAAVAPAPAPGTDSASSVHWFRKGLRLHDNPA 60
MGGVHVAYRGGAGVAGAVWTVMAATVATAAAVAPAPAPGTDSASSVHWFRKGLRLHDNPA
Sbjct: 1 MGGVHVAYRGGAGVAGAVWTVMAATVATAAAVAPAPAPGTDSASSVHWFRKGLRLHDNPA 60
Query: 61 LLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQP 120
LLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQP
Sbjct: 61 LLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQP 120
Query: 121 ADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIE 180
ADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIE
Sbjct: 121 ADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIE 180
Query: 181 LNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGF 240
LNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGF
Sbjct: 181 LNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGF 240
Query: 241 PTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCL 300
PTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCL
Sbjct: 241 PTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCL 300
Query: 301 SCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW 360
SCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW
Sbjct: 301 SCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW 360
Query: 361 DRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRV 420
DRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRV
Sbjct: 361 DRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRV 420
Query: 421 FDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFP 480
FDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFP
Sbjct: 421 FDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFP 480
Query: 481 SRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGLCLL 540
SRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGLCLL
Sbjct: 481 SRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGLCLL 540
Query: 541 ASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRAR 600
ASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRAR
Sbjct: 541 ASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRAR 600
Query: 601 VAELPTPELPSKDA 614
VAELPTPELPSKDA
Sbjct: 601 VAELPTPELPSKDA 614
>gi|188536103 cryptochrome 2 (photolyase-like) isoform 2 [Homo
sapiens]
Length = 532
Score = 1079 bits (2791), Expect = 0.0
Identities = 521/521 (100%), Positives = 521/521 (100%)
Query: 94 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 153
FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI
Sbjct: 12 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 71
Query: 154 MKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQ 213
MKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQ
Sbjct: 72 MKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQ 131
Query: 214 QMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVAN 273
QMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVAN
Sbjct: 132 QMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVAN 191
Query: 274 YERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWR 333
YERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWR
Sbjct: 192 YERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWR 251
Query: 334 EFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWI 393
EFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWI
Sbjct: 252 EFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWI 311
Query: 394 HHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCY 453
HHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCY
Sbjct: 312 HHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCY 371
Query: 454 CPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNH 513
CPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNH
Sbjct: 372 CPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNH 431
Query: 514 AETSRLNIERMKQIYQQLSRYRGLCLLASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPL 573
AETSRLNIERMKQIYQQLSRYRGLCLLASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPL
Sbjct: 432 AETSRLNIERMKQIYQQLSRYRGLCLLASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPL 491
Query: 574 PSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELPSKDA 614
PSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELPSKDA
Sbjct: 492 PSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELPSKDA 532
>gi|4758072 cryptochrome 1 (photolyase-like) [Homo sapiens]
Length = 586
Score = 889 bits (2297), Expect = 0.0
Identities = 407/502 (81%), Positives = 460/502 (91%)
Query: 44 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 103
++VHWFRKGLRLHDNPAL ++GA +RCVYILDPWFA SS+VGINRWRFLLQ LEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 104 TSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVE 163
+LRKLNSRLFV+RGQPADVFPRLFKEW +T+L+ EYDSEPFGKERDAAI K+A EAGVE
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 164 VVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQ 223
V+ SHTLYDLD+IIELNG +PPLTYKRFQ +IS+ME + PV +TS+ +E C +
Sbjct: 124 VIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLS 183
Query: 224 ENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANS 283
++HDE YGVPSLEELGF T+GL AVW GGETEAL RL++HLERKAWVAN+ERPRMNANS
Sbjct: 184 DDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANS 243
Query: 284 LLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNN 343
LLASPTGLSPYLRFGCLSCRLFY++L DLYKKVK+NS+PPLSL+GQLLWREFFYTAATNN
Sbjct: 244 LLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNN 303
Query: 344 PRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVAC 403
PRFD+MEGNPIC+QIPWD+NPEALAKWAEG+TGFPWIDAIMTQLRQEGWIHHLARHAVAC
Sbjct: 304 PRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVAC 363
Query: 404 FLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 463
FLTRGDLW+SWE G++VF+ELLLDAD+S+NAGSWMWLSCS+FFQQFFHCYCPVGFGRRTD
Sbjct: 364 FLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
Query: 464 PSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIER 523
P+GDYIRRYLP L+ FP++YIY+PWNAPE IQK AKC+IGV+YP+P+VNHAE SRLNIER
Sbjct: 424 PNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIER 483
Query: 524 MKQIYQQLSRYRGLCLLASVPS 545
MKQIYQQLSRYRGL LLASVPS
Sbjct: 484 MKQIYQQLSRYRGLGLLASVPS 505
>gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens]
Length = 1321
Score = 37.0 bits (84), Expect = 0.053
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 501 IIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGLCLLASVPSCVEDLSHPVAEPSSS 560
++ D+ P+V+ E L +E ++ Q LS G +LAS P+ LS PS
Sbjct: 399 VVTPDFQEPLVSSGEEETLILEEKQESQQTLSPTPGDPMLASWPTGEVWLSTVAPSPSDM 458
Query: 561 QAGSMSSAGPRPLPSGPASPKR 582
AG+ +S+ P+ P +R
Sbjct: 459 GAGTAASSHTEVAPTDPMPRRR 480
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 35.0 bits (79), Expect = 0.20
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 555 AEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELPS 611
A+P S Q GS P P GPA P + + +PP ++ A+ P+P PS
Sbjct: 497 AKPPSQQPGSTK---PPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPS 550
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 35.0 bits (79), Expect = 0.20
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 555 AEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELPS 611
A+P S Q GS P P GPA P + + +PP ++ A+ P+P PS
Sbjct: 497 AKPPSQQPGSTK---PPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPS 550
>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
sapiens]
Length = 735
Score = 35.0 bits (79), Expect = 0.20
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 548 EDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEP-PGEELS-KRARVAEL 604
ED P EP Q GS S G P + PASP K + P P LS K ++ EL
Sbjct: 118 EDPRPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPEL 176
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 34.7 bits (78), Expect = 0.27
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 17/66 (25%)
Query: 557 PSSSQAGSMSSAGPRPL---------PSGPASPKRKLEAAEEP---PGEELSKRARVAEL 604
P+SSQAG+++S GP PSGPA + L A + P PG+ V+ +
Sbjct: 1021 PASSQAGTVTSYGPTSSVALGFTSLGPSGPAFVQPLLSAGQAPLLAPGQ-----VGVSPV 1075
Query: 605 PTPELP 610
P+P+LP
Sbjct: 1076 PSPQLP 1081
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 33.9 bits (76), Expect = 0.45
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 568 AGPRPLPSGPASPKRKLEAA--EEPPGEELSKRARVAELPTPELPSKDA 614
A PR LP PASP+ AA EP GE + ELP P LP + A
Sbjct: 44 AAPRYLPPLPASPETPERAAGPSEPLGEVAPRCRGADELPPPPLPLQPA 92
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 33.5 bits (75), Expect = 0.59
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 541 ASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRAR 600
A+VP+ E S A P+ + S ++A P P PASP + EEP +
Sbjct: 1083 AAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTP--EEPASPAAAVPTPEEP-------ASP 1133
Query: 601 VAELPTPELPS 611
A +PTPE P+
Sbjct: 1134 AAAVPTPEEPA 1144
Score = 33.1 bits (74), Expect = 0.77
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 541 ASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRAR 600
A+VP+ E S A P+ + S ++A P P P SP + EEP +
Sbjct: 1044 AAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTP--EEPTSPAAAVPTPEEP-------TSP 1094
Query: 601 VAELPTPELPSKDA 614
A +PTPE P+ A
Sbjct: 1095 AAAVPTPEEPTSPA 1108
Score = 33.1 bits (74), Expect = 0.77
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 540 LASVPSCVEDLSHPVA------EPSSSQAGSM------SSAGPRPLPSGPASPKRKLEAA 587
LA+ S E+ + P A EP+SS A + S A P P PASP +
Sbjct: 1231 LAAAVSNPEEPTSPAAAVPTLEEPTSSAAAVLTPEELSSPAASVPTPEEPASPAAAVSNL 1290
Query: 588 EEP-------PGEELSKRARVAELPTPELPS 611
EEP P E++ A +PTPE+P+
Sbjct: 1291 EEPASPAAAVPTPEVA-AIPAASVPTPEVPA 1320
Score = 32.7 bits (73), Expect = 1.0
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 541 ASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRAR 600
A+VP+ E S A P+ + S ++A P P P SP + EEP +
Sbjct: 1005 AAVPTPEEPTSPAAAVPTPEEPTSPAAAVPP--PEEPTSPAAAVPTPEEP-------TSP 1055
Query: 601 VAELPTPELPSKDA 614
A +PTPE P+ A
Sbjct: 1056 AAAVPTPEEPTSPA 1069
Score = 32.3 bits (72), Expect = 1.3
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 541 ASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRAR 600
A+VP+ E S A P + S ++A P P P SP + EEP +
Sbjct: 1018 AAVPTPEEPTSPAAAVPPPEEPTSPAAAVPTP--EEPTSPAAAVPTPEEP-------TSP 1068
Query: 601 VAELPTPELPSKDA 614
A +PTPE P+ A
Sbjct: 1069 AAAVPTPEEPTSPA 1082
Score = 30.4 bits (67), Expect = 5.0
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 548 EDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPTP 607
E S A P+ + S ++A P P P SP AA PP EE + A A +PTP
Sbjct: 999 EPASPAAAVPTPEEPTSPAAAVPTP--EEPTSP-----AAAVPPPEEPTSPA--AAVPTP 1049
Query: 608 ELPSKDA 614
E P+ A
Sbjct: 1050 EEPTSPA 1056
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.5 bits (75), Expect = 0.59
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 541 ASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRAR 600
+S S S + SSS + S SS+ P P GP + + + PPGE S+ R
Sbjct: 2620 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPR 2679
>gi|223718196 perilipin [Homo sapiens]
Length = 522
Score = 32.7 bits (73), Expect = 1.0
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 549 DLSHPVAE----PSSSQAGSMSSAGPRPLPSGPASPKRKLEAA---EEPPGEELSKRARV 601
D+ +P AE + +A SAGP P P A P+R L +A PPG L
Sbjct: 418 DIDNPPAEVERREAERRASGAPSAGPEPAPR-LAQPRRSLRSAQSPGAPPGPGLEDEVAT 476
Query: 602 AELPTPELPS 611
P P P+
Sbjct: 477 PAAPRPGFPA 486
>gi|223718203 perilipin [Homo sapiens]
Length = 522
Score = 32.7 bits (73), Expect = 1.0
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 549 DLSHPVAE----PSSSQAGSMSSAGPRPLPSGPASPKRKLEAA---EEPPGEELSKRARV 601
D+ +P AE + +A SAGP P P A P+R L +A PPG L
Sbjct: 418 DIDNPPAEVERREAERRASGAPSAGPEPAPR-LAQPRRSLRSAQSPGAPPGPGLEDEVAT 476
Query: 602 AELPTPELPS 611
P P P+
Sbjct: 477 PAAPRPGFPA 486
>gi|149193327 mucin 20 isoform S [Homo sapiens]
Length = 503
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 540 LASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPG 592
L+S S D HPV PS + S SS GP P+ +P R E++ G
Sbjct: 137 LSSESSASSDSPHPVITPSRASESSASSDGPHPV----ITPSRASESSASSDG 185
Score = 30.8 bits (68), Expect = 3.8
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 541 ASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASP 580
AS S D HPV PS + S SS GP P+ + SP
Sbjct: 157 ASESSASSDGPHPVITPSRASESSASSDGPHPVITPSWSP 196
>gi|149193325 mucin 20 isoform L [Homo sapiens]
Length = 538
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 540 LASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPG 592
L+S S D HPV PS + S SS GP P+ +P R E++ G
Sbjct: 172 LSSESSASSDSPHPVITPSRASESSASSDGPHPV----ITPSRASESSASSDG 220
Score = 30.8 bits (68), Expect = 3.8
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 541 ASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASP 580
AS S D HPV PS + S SS GP P+ + SP
Sbjct: 192 ASESSASSDGPHPVITPSRASESSASSDGPHPVITPSWSP 231
>gi|187281580 meckelin isoform 1 [Homo sapiens]
Length = 995
Score = 32.0 bits (71), Expect = 1.7
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 6 VAYRGGAGVAGAVWTVMAATVATA 29
+A RGGAGVA AVW++++A TA
Sbjct: 1 MATRGGAGVAMAVWSLLSARAVTA 24
>gi|42475941 zinc finger protein 261 [Homo sapiens]
Length = 1370
Score = 32.0 bits (71), Expect = 1.7
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 544 PSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAE 603
PS E L + + GS A P LP + K A+E+PP + S+R R AE
Sbjct: 193 PSVGETLGDGINSSQTKPGGSSPPAHPS-LPGDGLTAK----ASEKPPERKRSERVRRAE 247
Query: 604 LPTPEL 609
P PE+
Sbjct: 248 PPKPEV 253
>gi|4827067 zinc finger protein 261 [Homo sapiens]
Length = 1370
Score = 32.0 bits (71), Expect = 1.7
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 544 PSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAE 603
PS E L + + GS A P LP + K A+E+PP + S+R R AE
Sbjct: 193 PSVGETLGDGINSSQTKPGGSSPPAHPS-LPGDGLTAK----ASEKPPERKRSERVRRAE 247
Query: 604 LPTPEL 609
P PE+
Sbjct: 248 PPKPEV 253
>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
Length = 1302
Score = 32.0 bits (71), Expect = 1.7
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 536 GLCLLASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASP 580
G+ +L+S PS S P A P+SS SS GP PLP PASP
Sbjct: 343 GVSILSSSPSPPALASSPQAVPASSSRQRPSSTGP-PLP--PASP 384
>gi|21265052 ADAM metallopeptidase with thrombospondin type 1 motif,
14 isoform 2 preproprotein [Homo sapiens]
Length = 1223
Score = 32.0 bits (71), Expect = 1.7
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 528 YQQLSRYRGLCLLASVPSCVEDLS--HPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLE 585
Y + Y LC + SC++ S +P +P + S+ G PLP GP P E
Sbjct: 1079 YCSIPGYHRLCCV----SCIKKASGPNPGPDPGPTSLPPFSTPG-SPLP-GPQDPADAAE 1132
Query: 586 AAEEPPGEELSKRARVAELP 605
+P G E + R +LP
Sbjct: 1133 PPGKPTGSEDHQHGRATQLP 1152
>gi|110611167 ADAM metallopeptidase with thrombospondin type 1 motif,
14 isoform 1 preproprotein [Homo sapiens]
Length = 1226
Score = 32.0 bits (71), Expect = 1.7
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 528 YQQLSRYRGLCLLASVPSCVEDLS--HPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLE 585
Y + Y LC + SC++ S +P +P + S+ G PLP GP P E
Sbjct: 1082 YCSIPGYHRLCCV----SCIKKASGPNPGPDPGPTSLPPFSTPG-SPLP-GPQDPADAAE 1135
Query: 586 AAEEPPGEELSKRARVAELP 605
+P G E + R +LP
Sbjct: 1136 PPGKPTGSEDHQHGRATQLP 1155
>gi|55956914 myosin binding protein H [Homo sapiens]
Length = 477
Score = 31.6 bits (70), Expect = 2.2
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 566 SSAGPRPLPSGPASPKRKLEAAEEPPGE-ELSKRARVAELPTPELPSKDA 614
+S GP P AS K+ AE PPGE +S+ R ++P P+ P+ A
Sbjct: 6 TSEGPACSPEETASESAKVPTAE-PPGEVAVSESTREEQVPKPQAPAPQA 54
>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 31.2 bits (69), Expect = 2.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 553 PVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPP 591
P A +SS SM+S P P+P P P L+A PP
Sbjct: 332 PSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPP 370
>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 31.2 bits (69), Expect = 2.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 553 PVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPP 591
P A +SS SM+S P P+P P P L+A PP
Sbjct: 332 PSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPP 370
>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 31.2 bits (69), Expect = 2.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 553 PVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPP 591
P A +SS SM+S P P+P P P L+A PP
Sbjct: 332 PSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPP 370
>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 31.2 bits (69), Expect = 2.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 553 PVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPP 591
P A +SS SM+S P P+P P P L+A PP
Sbjct: 332 PSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPP 370
>gi|239756307 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 31.2 bits (69), Expect = 2.9
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 557 PSSSQAG-SMSSAGPRPL-PSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELP 610
PS +Q+ S S GP P P+ PASP R A PP V LP P P
Sbjct: 188 PSPAQSPRSASPPGPAPQHPAAPASPPRPSTAGAIPPLRSHKPTVAVRILPAPPRP 243
>gi|239750857 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 31.2 bits (69), Expect = 2.9
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 557 PSSSQAG-SMSSAGPRPL-PSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELP 610
PS +Q+ S S GP P P+ PASP R A PP V LP P P
Sbjct: 188 PSPAQSPRSASPPGPAPQHPAAPASPPRPSTAGAIPPLRSHKPTVAVRILPAPPRP 243
>gi|239745220 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 31.2 bits (69), Expect = 2.9
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 557 PSSSQAG-SMSSAGPRPL-PSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELP 610
PS +Q+ S S GP P P+ PASP R A PP V LP P P
Sbjct: 188 PSPAQSPRSASPPGPAPQHPAAPASPPRPSTAGAIPPLRSHKPTVAVRILPAPPRP 243
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 31.2 bits (69), Expect = 2.9
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 536 GLCLLASVPSCVEDLSHPVAEPSSSQAGSMSSAGPRPLPSGPASPKRKLEAAEEPPGEEL 595
G C A+ S E + P EP++ A P P P+ +P+ E A EP E
Sbjct: 64 GPCPEATSESATELYTEPTPEPATEPASE-----PAPEPATEPAPEPATEPAPEPAPEPA 118
Query: 596 SKRARVAELPTPE 608
++ A PTPE
Sbjct: 119 TES---APEPTPE 128
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,752,273
Number of Sequences: 37866
Number of extensions: 1340897
Number of successful extensions: 6359
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 6230
Number of HSP's gapped (non-prelim): 169
length of query: 614
length of database: 18,247,518
effective HSP length: 108
effective length of query: 506
effective length of database: 14,157,990
effective search space: 7163942940
effective search space used: 7163942940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.