Search of human proteins with 10047138

Search of human proteins with 10047138

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10047138 NADH:ubiquinone oxidoreductase MLRQ subunit homolog
[Homo sapiens]
         (87 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|10047138 NADH:ubiquinone oxidoreductase MLRQ subunit homolog ...   185   8e-48
gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4...   110   3e-25
gi|239753639 PREDICTED: similar to hCG2040339 [Homo sapiens]          105   1e-23
gi|239748188 PREDICTED: similar to hCG2040339 [Homo sapiens]          105   1e-23
gi|239742082 PREDICTED: hypothetical protein XP_002342432 [Homo ...   105   1e-23
gi|239755555 PREDICTED: similar to NADH dehydrogenase (ubiquinon...    90   3e-19
gi|239750055 PREDICTED: hypothetical protein XP_002347281 [Homo ...    90   3e-19
gi|239744362 PREDICTED: hypothetical protein XP_002343134 [Homo ...    90   3e-19
gi|14165280 normal mucosa of esophagus specific 1 [Homo sapiens]       45   2e-05
gi|37694067 normal mucosa of esophagus specific 1 [Homo sapiens]       45   2e-05
gi|148368978 kleisin beta isoform 2 [Homo sapiens]                     30   0.53 
gi|218749837 SMAD family member 6 isoform 2 [Homo sapiens]             29   0.70 
gi|192447434 carbonic anhydrase I [Homo sapiens]                       29   0.91 
gi|192447432 carbonic anhydrase I [Homo sapiens]                       29   0.91 
gi|192447430 carbonic anhydrase I [Homo sapiens]                       29   0.91 
gi|4502517 carbonic anhydrase I [Homo sapiens]                         29   0.91 
gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens]              27   2.6  
gi|24308545 folate hydrolase 1B [Homo sapiens]                         27   3.5  
gi|157426885 organic cation transporter like 4 [Homo sapiens]          27   4.5  
gi|197927448 WD repeat domain 6 protein [Homo sapiens]                 26   5.9  
gi|122937424 one cut homeobox 3 [Homo sapiens]                         26   7.7  

>gi|10047138 NADH:ubiquinone oxidoreductase MLRQ subunit homolog
          [Homo sapiens]
          Length = 87

 Score =  185 bits (469), Expect = 8e-48
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 1  MAGASLGARFYRQIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWN 60
          MAGASLGARFYRQIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWN
Sbjct: 1  MAGASLGARFYRQIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWN 60

Query: 61 RLSPNDQYKFLAVSTDYKKLKKDRPDF 87
          RLSPNDQYKFLAVSTDYKKLKKDRPDF
Sbjct: 61 RLSPNDQYKFLAVSTDYKKLKKDRPDF 87


>gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4,
          9kDa [Homo sapiens]
          Length = 81

 Score =  110 bits (274), Expect = 3e-25
 Identities = 50/75 (66%), Positives = 58/75 (77%), Gaps = 1/75 (1%)

Query: 13 QIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72
          Q K+HP +IP+   I  G   A LYLLRLAL +PDVCWDR NNPEPWN+L PNDQYKF +
Sbjct: 8  QAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDR-NNPEPWNKLGPNDQYKFYS 66

Query: 73 VSTDYKKLKKDRPDF 87
          V+ DY KLKK+RPDF
Sbjct: 67 VNVDYSKLKKERPDF 81


>gi|239753639 PREDICTED: similar to hCG2040339 [Homo sapiens]
          Length = 100

 Score =  105 bits (261), Expect = 1e-23
 Identities = 47/75 (62%), Positives = 58/75 (77%)

Query: 13  QIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72
           Q+K+HP ++P+   I +G   AALYLL LAL +PDV WDRKNN EPWN+L PNDQYKF +
Sbjct: 26  QVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYS 85

Query: 73  VSTDYKKLKKDRPDF 87
           V+ DY KLKK+ PDF
Sbjct: 86  VNVDYSKLKKEGPDF 100


>gi|239748188 PREDICTED: similar to hCG2040339 [Homo sapiens]
          Length = 100

 Score =  105 bits (261), Expect = 1e-23
 Identities = 47/75 (62%), Positives = 58/75 (77%)

Query: 13  QIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72
           Q+K+HP ++P+   I +G   AALYLL LAL +PDV WDRKNN EPWN+L PNDQYKF +
Sbjct: 26  QVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYS 85

Query: 73  VSTDYKKLKKDRPDF 87
           V+ DY KLKK+ PDF
Sbjct: 86  VNVDYSKLKKEGPDF 100


>gi|239742082 PREDICTED: hypothetical protein XP_002342432 [Homo
           sapiens]
          Length = 100

 Score =  105 bits (261), Expect = 1e-23
 Identities = 47/75 (62%), Positives = 58/75 (77%)

Query: 13  QIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72
           Q+K+HP ++P+   I +G   AALYLL LAL +PDV WDRKNN EPWN+L PNDQYKF +
Sbjct: 26  QVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYS 85

Query: 73  VSTDYKKLKKDRPDF 87
           V+ DY KLKK+ PDF
Sbjct: 86  VNVDYSKLKKEGPDF 100


>gi|239755555 PREDICTED: similar to NADH dehydrogenase
          (ubiquinone) 1 alpha subcomplex, 4 [Homo sapiens]
          Length = 82

 Score = 90.1 bits (222), Expect = 3e-19
 Identities = 43/75 (57%), Positives = 51/75 (68%)

Query: 13 QIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72
          Q K++P +I     I  G   AA Y+L LA  SPDV W R NNPEPWN+LSPNDQYK  +
Sbjct: 8  QTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQYKSYS 67

Query: 73 VSTDYKKLKKDRPDF 87
          V+ DY KLKK+ PDF
Sbjct: 68 VNVDYSKLKKEGPDF 82


>gi|239750055 PREDICTED: hypothetical protein XP_002347281 [Homo
          sapiens]
          Length = 82

 Score = 90.1 bits (222), Expect = 3e-19
 Identities = 43/75 (57%), Positives = 51/75 (68%)

Query: 13 QIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72
          Q K++P +I     I  G   AA Y+L LA  SPDV W R NNPEPWN+LSPNDQYK  +
Sbjct: 8  QTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQYKSYS 67

Query: 73 VSTDYKKLKKDRPDF 87
          V+ DY KLKK+ PDF
Sbjct: 68 VNVDYSKLKKEGPDF 82


>gi|239744362 PREDICTED: hypothetical protein XP_002343134 [Homo
          sapiens]
          Length = 82

 Score = 90.1 bits (222), Expect = 3e-19
 Identities = 43/75 (57%), Positives = 51/75 (68%)

Query: 13 QIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72
          Q K++P +I     I  G   AA Y+L LA  SPDV W R NNPEPWN+LSPNDQYK  +
Sbjct: 8  QTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQYKSYS 67

Query: 73 VSTDYKKLKKDRPDF 87
          V+ DY KLKK+ PDF
Sbjct: 68 VNVDYSKLKKEGPDF 82


>gi|14165280 normal mucosa of esophagus specific 1 [Homo sapiens]
          Length = 83

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 10 FYRQIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYK 69
          F++ + +   +IP++  + +  G A+ + +  +L   DV  DRK NPEPW  + P    K
Sbjct: 3  FFQLLMKRKELIPLVVFMTVAAGGASSFAV-YSLWKTDVILDRKKNPEPWETVDPTVPQK 61

Query: 70 FLAVSTDYKKLKK 82
           + ++  +K +++
Sbjct: 62 LITINQQWKPIEE 74


>gi|37694067 normal mucosa of esophagus specific 1 [Homo sapiens]
          Length = 83

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 10 FYRQIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYK 69
          F++ + +   +IP++  + +  G A+ + +  +L   DV  DRK NPEPW  + P    K
Sbjct: 3  FFQLLMKRKELIPLVVFMTVAAGGASSFAV-YSLWKTDVILDRKKNPEPWETVDPTVPQK 61

Query: 70 FLAVSTDYKKLKK 82
           + ++  +K +++
Sbjct: 62 LITINQQWKPIEE 74


>gi|148368978 kleisin beta isoform 2 [Homo sapiens]
          Length = 605

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 33  SAAL---YLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLAVSTDYKKLKKDRP 85
           SAAL   Y+LR    +P+     K  P+PW  L P D       S + K  KK RP
Sbjct: 288 SAALPRRYMLREREGAPEPASCVKETPDPWQSLDPFD-------SLESKPFKKGRP 336


>gi|218749837 SMAD family member 6 isoform 2 [Homo sapiens]
          Length = 235

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 12/23 (52%), Positives = 18/23 (78%)

Query: 52 RKNNPEPWNRLSPNDQYKFLAVS 74
          +K+ P P++RLSP D+YK L +S
Sbjct: 11 QKSPPPPYSRLSPRDEYKPLDLS 33


>gi|192447434 carbonic anhydrase I [Homo sapiens]
          Length = 261

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 43 LRSPDVCWDRKNNPEPWNRLSP 64
          + SPD  +D KN PE W++L P
Sbjct: 1  MASPDWGYDDKNGPEQWSKLYP 22


>gi|192447432 carbonic anhydrase I [Homo sapiens]
          Length = 261

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 43 LRSPDVCWDRKNNPEPWNRLSP 64
          + SPD  +D KN PE W++L P
Sbjct: 1  MASPDWGYDDKNGPEQWSKLYP 22


>gi|192447430 carbonic anhydrase I [Homo sapiens]
          Length = 261

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 43 LRSPDVCWDRKNNPEPWNRLSP 64
          + SPD  +D KN PE W++L P
Sbjct: 1  MASPDWGYDDKNGPEQWSKLYP 22


>gi|4502517 carbonic anhydrase I [Homo sapiens]
          Length = 261

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 43 LRSPDVCWDRKNNPEPWNRLSP 64
          + SPD  +D KN PE W++L P
Sbjct: 1  MASPDWGYDDKNGPEQWSKLYP 22


>gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens]
          Length = 496

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 56  PEPWNRLSPNDQYKFLAVS 74
           P P++RLSP D+YK L +S
Sbjct: 276 PPPYSRLSPRDEYKPLDLS 294


>gi|24308545 folate hydrolase 1B [Homo sapiens]
          Length = 442

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 28  CLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQY 68
           C  +  + +Y L   L+SPD  ++ K+  E W + SP+ ++
Sbjct: 158 CTPLMYSLVYNLTKELKSPDEGFEGKSLYESWTKKSPSPEF 198


>gi|157426885 organic cation transporter like 4 [Homo sapiens]
          Length = 594

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 1   MAGASLGARFYRQIK----RHPGI-IPMIGLICLGMGSAALYLLRLAL 43
           MAG  +G+  +R I     R+P I + ++GLI  G G+A +    L L
Sbjct: 191 MAGLPIGSLIFRLITDKMGRYPAILLSLLGLIIFGFGTAFMNSFHLYL 238


>gi|197927448 WD repeat domain 6 protein [Homo sapiens]
          Length = 1151

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 35  ALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLAV 73
           A +++ L+    D  WDR+ N     ++ P  +Y  LAV
Sbjct: 859 ACHVMHLSSHRLDEYWDRQRNRHRMVKVDPETRYMSLAV 897


>gi|122937424 one cut homeobox 3 [Homo sapiens]
          Length = 494

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 35  ALYLLRLALRSPDVCWDRKNNPEPWNRL 62
           A++  R+  RS     D   NP+PW++L
Sbjct: 342 AIFAQRILCRSQGTLSDLLRNPKPWSKL 369


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.142    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,608,810
Number of Sequences: 37866
Number of extensions: 147995
Number of successful extensions: 411
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 21
length of query: 87
length of database: 18,247,518
effective HSP length: 59
effective length of query: 28
effective length of database: 16,013,424
effective search space: 448375872
effective search space used: 448375872
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.