Guide to the Human Genome
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Name: C15orf48 Sequence: fasta or formatted (83aa) NCBI GI: 37694067
Description:

normal mucosa of esophagus specific 1

Referenced in:

Stomach, Small Intestine, and Colon

Other entries for this name:
alt mRNA [83aa] normal mucosa of esophagus specific 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8          4           2
 C cysteine            0.0          0           0
 D aspartate           3.6          3           1
 E glutamate           6.0          5           2
 F phenylalanine       4.8          4           2
 G glycine             2.4          2           2
 H histidine           0.0          0           0
 I isoleucine          6.0          5           1
 K lysine              9.6          8           2
 L leucine             9.6          8           2
 M methionine          3.6          3           1
 N asparagine          3.6          3           1
 P proline             7.2          6           1
 Q glutamine           7.2          6           2
 R arginine            3.6          3           1
 S serine              4.8          4           2
 T threonine           7.2          6           1
 V valine             10.8          9           2
 W tryptophan          3.6          3           1
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   normal mucosa of esophagus specific 1 
C15orf48              1.000   normal mucosa of esophagus specific 1 
LOC100292787          0.153   PREDICTED: similar to hCG2040339 
LOC100287880          0.153   PREDICTED: similar to hCG2040339 
LOC100287880          0.153   PREDICTED: hypothetical protein XP_002342432 
NDUFA4L2              0.139   NADH:ubiquinone oxidoreductase MLRQ subunit homolog ...
NDUFA4                0.118   NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4...
LOC100291584          0.062   PREDICTED: similar to NADH dehydrogenase (ubiquinon...
LOC100289778          0.062   PREDICTED: hypothetical protein XP_002347281 
LOC100287801          0.062   PREDICTED: hypothetical protein XP_002343134 
ZNF469                0.035   zinc finger protein 469 
C14orf174             0.035   hypothetical protein LOC161394 
NCOA7                 0.014   nuclear receptor coactivator 7 isoform 2 
NCOA7                 0.014   nuclear receptor coactivator 7 isoform 1 
CHD1                  0.007   chromodomain helicase DNA binding protein 1 
ZNF10                 0.007   zinc finger protein 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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