Guide to the Human Genome
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Name: LOC100287880 Sequence: fasta or formatted (100aa) NCBI GI: 239748188
Description:

PREDICTED: similar to hCG2040339

Not currently referenced in the text

Other entries for this name:
alt mRNA {100aa} PREDICTED: hypothetical protein XP_002342432
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0          5           2
 C cysteine            2.0          2           1
 D aspartate           7.0          7           1
 E glutamate           3.0          3           1
 F phenylalanine       7.0          7           1
 G glycine             5.0          5           1
 H histidine           1.0          1           1
 I isoleucine          4.0          4           2
 K lysine              8.0          8           2
 L leucine            12.0         12           2
 M methionine          2.0          2           1
 N asparagine          8.0          8           2
 P proline             7.0          7           1
 Q glutamine           3.0          3           1
 R arginine            3.0          3           1
 S serine              8.0          8           1
 T threonine           2.0          2           1
 V valine              7.0          7           1
 W tryptophan          2.0          2           1
 Y tyrosine            4.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040339 
LOC100292787          1.000   PREDICTED: similar to hCG2040339 
LOC100287880          1.000   PREDICTED: hypothetical protein XP_002342432 
NDUFA4                0.608   NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4...
LOC100291584          0.543   PREDICTED: similar to NADH dehydrogenase (ubiquinon...
LOC100289778          0.543   PREDICTED: hypothetical protein XP_002347281 
LOC100287801          0.543   PREDICTED: hypothetical protein XP_002343134 
NDUFA4L2              0.430   NADH:ubiquinone oxidoreductase MLRQ subunit homolog ...
C15orf48              0.118   normal mucosa of esophagus specific 1 
C15orf48              0.118   normal mucosa of esophagus specific 1 
WDR6                  0.011   WD repeat domain 6 protein 
ZNF727                0.005   zinc finger protein 727 
LOC100294071          0.005   PREDICTED: similar to zinc finger protein 208 [Homo...
CA1                   0.005   carbonic anhydrase I 
CA1                   0.005   carbonic anhydrase I 
CA1                   0.005   carbonic anhydrase I 
CA1                   0.005   carbonic anhydrase I 
LOC100130518          0.005   PREDICTED: similar to Zinc finger protein ENSP00000...
LOC100130518          0.005   PREDICTED: similar to Zinc finger protein ENSP00000...
LOC100130518          0.005   PREDICTED: similar to Zinc finger protein ENSP00000...
GTPBP2                0.005   GTP binding protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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