Guide to the Human Genome
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Name: LOC100289778 Sequence: fasta or formatted (82aa) NCBI GI: 239750055
Description:

PREDICTED: hypothetical protein XP_002347281

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1          5           2
 C cysteine            2.4          2           1
 D aspartate           4.9          4           1
 E glutamate           2.4          2           1
 F phenylalanine       4.9          4           1
 G glycine             4.9          4           1
 H histidine           1.2          1           1
 I isoleucine          3.7          3           1
 K lysine              8.5          7           2
 L leucine             7.3          6           1
 M methionine          1.2          1           1
 N asparagine          8.5          7           3
 P proline             8.5          7           1
 Q glutamine           3.7          3           1
 R arginine            1.2          1           1
 S serine             13.4         11           1
 T threonine           3.7          3           1
 V valine              4.9          4           1
 W tryptophan          3.7          3           1
 Y tyrosine            4.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347281 
LOC100291584          1.000   PREDICTED: similar to NADH dehydrogenase (ubiquinon...
LOC100287801          1.000   PREDICTED: hypothetical protein XP_002343134 
LOC100292787          0.660   PREDICTED: similar to hCG2040339 
LOC100287880          0.660   PREDICTED: similar to hCG2040339 
LOC100287880          0.660   PREDICTED: hypothetical protein XP_002342432 
NDUFA4                0.621   NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4...
NDUFA4L2              0.425   NADH:ubiquinone oxidoreductase MLRQ subunit homolog ...
C15orf48              0.059   normal mucosa of esophagus specific 1 
C15orf48              0.059   normal mucosa of esophagus specific 1 
CD34                  0.013   CD34 antigen isoform a 
CD34                  0.013   CD34 antigen isoform b 
KIAA1107              0.007   hypothetical protein LOC23285 
CA1                   0.007   carbonic anhydrase I 
CA1                   0.007   carbonic anhydrase I 
CA1                   0.007   carbonic anhydrase I 
CA1                   0.007   carbonic anhydrase I 
PRG-3                 0.007   plasticity related gene 3 
PRG-3                 0.007   plasticity related gene 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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