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Search of human proteins with 186928852
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|186928852 mitochondrial ribosomal protein S7 [Homo sapiens]
(242 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|186928852 mitochondrial ribosomal protein S7 [Homo sapiens] 493 e-140
gi|13904870 ribosomal protein S5 [Homo sapiens] 37 0.020
gi|50845418 WNK lysine deficient protein kinase 3 isoform 1 [Hom... 31 0.85
gi|50845416 WNK lysine deficient protein kinase 3 isoform 2 [Hom... 31 0.85
gi|20806097 nucleolar complex associated 3 homolog [Homo sapiens] 31 0.85
gi|8922633 high-mobility group 20A [Homo sapiens] 30 1.9
gi|221316624 dystonin isoform 4 [Homo sapiens] 29 3.2
gi|221316622 dystonin isoform 3 [Homo sapiens] 29 3.2
gi|221316618 dystonin isoform 2 [Homo sapiens] 29 3.2
gi|34577047 dystonin isoform 1 [Homo sapiens] 29 3.2
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 29 3.2
gi|4503923 gastrin preproprotein [Homo sapiens] 29 4.2
gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo s... 29 4.2
gi|89060961 PREDICTED: FERM and PDZ domain containing 3 [Homo sa... 29 4.2
gi|89059963 PREDICTED: FERM and PDZ domain containing 3 [Homo sa... 29 4.2
gi|22325356 PALM2-AKAP2 protein isoform 2 [Homo sapiens] 28 7.2
gi|6005709 PALM2-AKAP2 protein isoform 1 [Homo sapiens] 28 7.2
gi|211971074 A kinase (PRKA) anchor protein 2 isoform 2 [Homo sa... 28 7.2
gi|51873058 A kinase (PRKA) anchor protein 2 isoform 1 [Homo sap... 28 7.2
gi|45643121 peroxisomal D3,D2-enoyl-CoA isomerase isoform 2 [Hom... 28 7.2
gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Hom... 28 7.2
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 28 9.4
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 28 9.4
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 28 9.4
gi|106507301 DNA-directed DNA polymerase alpha 1 [Homo sapiens] 28 9.4
gi|117606355 furry homolog [Homo sapiens] 28 9.4
>gi|186928852 mitochondrial ribosomal protein S7 [Homo sapiens]
Length = 242
Score = 493 bits (1269), Expect = e-140
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MAAPAVKVARGWSGLALGVRRAVLQLPGLTQVRWSRYSPEFKDPLIDKEYYRKPVEELTE 60
MAAPAVKVARGWSGLALGVRRAVLQLPGLTQVRWSRYSPEFKDPLIDKEYYRKPVEELTE
Sbjct: 1 MAAPAVKVARGWSGLALGVRRAVLQLPGLTQVRWSRYSPEFKDPLIDKEYYRKPVEELTE 60
Query: 61 EEKYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVLARSLMIQTLEAVKR 120
EEKYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVLARSLMIQTLEAVKR
Sbjct: 61 EEKYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVLARSLMIQTLEAVKR 120
Query: 121 KQFEKYHAASAEEQATIERNPYTIFHQALKNCEPMIGLVPILKGGRFYQVPVPLPDRRRR 180
KQFEKYHAASAEEQATIERNPYTIFHQALKNCEPMIGLVPILKGGRFYQVPVPLPDRRRR
Sbjct: 121 KQFEKYHAASAEEQATIERNPYTIFHQALKNCEPMIGLVPILKGGRFYQVPVPLPDRRRR 180
Query: 181 FLAMKWMITECRDKKHQRTLMPEKLSHKLLEAFHNQGPVIKRKHDLHKMAEANRALAHYR 240
FLAMKWMITECRDKKHQRTLMPEKLSHKLLEAFHNQGPVIKRKHDLHKMAEANRALAHYR
Sbjct: 181 FLAMKWMITECRDKKHQRTLMPEKLSHKLLEAFHNQGPVIKRKHDLHKMAEANRALAHYR 240
Query: 241 WW 242
WW
Sbjct: 241 WW 242
>gi|13904870 ribosomal protein S5 [Homo sapiens]
Length = 204
Score = 36.6 bits (83), Expect = 0.020
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 17/177 (9%)
Query: 61 EEKYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVLARSLMIQTLEAVKR 120
+EKY + L + A K + P++ + TN MM+ G + T+ VK
Sbjct: 42 KEKYAKYLPHSA---GRYAAKRFRKAQCPIVERLTNSMMMHGRN---NGKKLMTVRIVKH 95
Query: 121 KQFEKYHAASAEEQATIERNPYTIFHQALKNCEPMIGLVPILKGGRFYQVPVPLPDRRRR 180
FE H + E NP + A+ N P I + G + V + RR
Sbjct: 96 A-FEIIHLLTGE-------NPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRV 147
Query: 181 FLAMKWMITECRDKKHQRT-LMPEKLSHKLLEAFHNQGP--VIKRKHDLHKMAEANR 234
A+ + T R+ + + E L+ +L+ A IK+K +L ++A++NR
Sbjct: 148 NQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>gi|50845418 WNK lysine deficient protein kinase 3 isoform 1 [Homo
sapiens]
Length = 1800
Score = 31.2 bits (69), Expect = 0.85
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 48 KEYYRKPVEELTEEEKYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVLA 107
K ++RK VE +TE++K K + IKAA P + K + ++ GG +V
Sbjct: 56 KRFFRKSVE-MTEDDKVAESSPKDERIKAA--------MNIPRVDKLPSNVLRGGQEVKY 106
Query: 108 RSLMIQTLEAVKRKQFEKYHAASAEEQATIE 138
T E + + F++ + EE+A ++
Sbjct: 107 EQCSKSTSE-ISKDCFKEKNEKEMEEEAEMK 136
>gi|50845416 WNK lysine deficient protein kinase 3 isoform 2 [Homo
sapiens]
Length = 1743
Score = 31.2 bits (69), Expect = 0.85
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 48 KEYYRKPVEELTEEEKYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVLA 107
K ++RK VE +TE++K K + IKAA P + K + ++ GG +V
Sbjct: 56 KRFFRKSVE-MTEDDKVAESSPKDERIKAA--------MNIPRVDKLPSNVLRGGQEVKY 106
Query: 108 RSLMIQTLEAVKRKQFEKYHAASAEEQATIE 138
T E + + F++ + EE+A ++
Sbjct: 107 EQCSKSTSE-ISKDCFKEKNEKEMEEEAEMK 136
>gi|20806097 nucleolar complex associated 3 homolog [Homo sapiens]
Length = 800
Score = 31.2 bits (69), Expect = 0.85
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 46 IDKEYYRKPVEELTEEEKYVRELKKTQLIKAAPAGKTSSVFEDP 89
+++E P++ELT EE + KK Q K A S++ DP
Sbjct: 186 LEEEIIEDPIQELTIEEHLIERKKKLQEKKMHIAALASAILSDP 229
>gi|8922633 high-mobility group 20A [Homo sapiens]
Length = 347
Score = 30.0 bits (66), Expect = 1.9
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 17 LGVRRAVLQLPGLTQV---RWSRYSPEFKDPLID-----KEYYRKPVEELTEEEKYVREL 68
L +R + P +T++ WS+ PE K +D KE Y K +E+ + E Y
Sbjct: 121 LRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS 180
Query: 69 KKTQ 72
+KTQ
Sbjct: 181 RKTQ 184
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 29.3 bits (64), Expect = 3.2
Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 47 DKEYYRKPVEELTEEEKYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVL 106
DK +K ++EL + + K ++ K A + + ++D + + F + + I G K+
Sbjct: 4176 DKPIVKKSIDELNSAWDSLNKAWKDRIDKLEEAMQAAVQYQDGLQAVF-DWVDIAGGKLA 4234
Query: 107 ARSLMIQTLEAVKR--KQFEKYHAASAEEQATIERNPYTIFHQA 148
+ S + LE VK+ ++ +++ + + ++Q +ER + HQA
Sbjct: 4235 SMSPIGTDLETVKQQIEELKQFKSEAYQQQIEMER----LNHQA 4274
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 29.3 bits (64), Expect = 3.2
Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 47 DKEYYRKPVEELTEEEKYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVL 106
DK +K ++EL + + K ++ K A + + ++D + + F + + I G K+
Sbjct: 4187 DKPIVKKSIDELNSAWDSLNKAWKDRIDKLEEAMQAAVQYQDGLQAVF-DWVDIAGGKLA 4245
Query: 107 ARSLMIQTLEAVKR--KQFEKYHAASAEEQATIERNPYTIFHQA 148
+ S + LE VK+ ++ +++ + + ++Q +ER + HQA
Sbjct: 4246 SMSPIGTDLETVKQQIEELKQFKSEAYQQQIEMER----LNHQA 4285
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 29.3 bits (64), Expect = 3.2
Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 47 DKEYYRKPVEELTEEEKYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVL 106
DK +K ++EL + + K ++ K A + + ++D + + F + + I G K+
Sbjct: 4325 DKPIVKKSIDELNSAWDSLNKAWKDRIDKLEEAMQAAVQYQDGLQAVF-DWVDIAGGKLA 4383
Query: 107 ARSLMIQTLEAVKR--KQFEKYHAASAEEQATIERNPYTIFHQA 148
+ S + LE VK+ ++ +++ + + ++Q +ER + HQA
Sbjct: 4384 SMSPIGTDLETVKQQIEELKQFKSEAYQQQIEMER----LNHQA 4423
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 29.3 bits (64), Expect = 3.2
Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 47 DKEYYRKPVEELTEEEKYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVL 106
DK +K ++EL + + K ++ K A + + ++D + + F + + I G K+
Sbjct: 4147 DKPIVKKSIDELNSAWDSLNKAWKDRIDKLEEAMQAAVQYQDGLQAVF-DWVDIAGGKLA 4205
Query: 107 ARSLMIQTLEAVKR--KQFEKYHAASAEEQATIERNPYTIFHQA 148
+ S + LE VK+ ++ +++ + + ++Q +ER + HQA
Sbjct: 4206 SMSPIGTDLETVKQQIEELKQFKSEAYQQQIEMER----LNHQA 4245
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 29.3 bits (64), Expect = 3.2
Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 47 DKEYYRKPVEELTEEEKYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVL 106
DK +K ++EL + + K ++ K A + + ++D + + F + + I G K+
Sbjct: 3821 DKPIVKKSIDELNSAWDSLNKAWKDRIDKLEEAMQAAVQYQDGLQAVF-DWVDIAGGKLA 3879
Query: 107 ARSLMIQTLEAVKR--KQFEKYHAASAEEQATIERNPYTIFHQA 148
+ S + LE VK+ ++ +++ + + ++Q +ER + HQA
Sbjct: 3880 SMSPIGTDLETVKQQIEELKQFKSEAYQQQIEMER----LNHQA 3919
>gi|4503923 gastrin preproprotein [Homo sapiens]
Length = 101
Score = 28.9 bits (63), Expect = 4.2
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 166 RFYQVPVPLPDRRRRFLAMKWMITECRDKKHQRTLMPEKLSHKLLEAFHNQGPVIKRKHD 225
R Q PL R L + W+ + H+R L P+ H + + QGP ++ + +
Sbjct: 26 RSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEEE 85
Query: 226 LHKMAEANRALA 237
+ + R A
Sbjct: 86 AYGWMDFGRRSA 97
>gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo
sapiens]
Length = 1662
Score = 28.9 bits (63), Expect = 4.2
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 15 LALGVRRAVLQLPGLTQVRWSRYSPEFKDP------LIDKEYYRKPVEELTEEE------ 62
+ALG + L+ P L + + +PE K P + +E YRKP E + E
Sbjct: 1319 IALGPKSRSLESPTLGDPSYVQVAPETKGPRQMAVFSLPEEVYRKPAELDEDSESSKCCS 1378
Query: 63 -KYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVLARSLMIQTLEA 117
+Y +K + A GK + P+ K M + V S +Q L+A
Sbjct: 1379 IRYCFYYRKCDMADDASDGKDELSYSIPM--KILPGMKLDEQVVPVVSRTLQVLDA 1432
>gi|89060961 PREDICTED: FERM and PDZ domain containing 3 [Homo
sapiens]
Length = 1810
Score = 28.9 bits (63), Expect = 4.2
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 15 LALGVRRAVLQLPGLTQVRWSRYSPEFKDP------LIDKEYYRKPVEELTEEE------ 62
+ALG + L+ P L + + +PE K P + +E YRKP E + E
Sbjct: 1467 IALGPKSRSLESPTLGDPSYVQVAPETKGPRQMAVFSLPEEVYRKPAELDEDSESSKCCS 1526
Query: 63 -KYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVLARSLMIQTLEA 117
+Y +K + A GK + P+ K M + V S +Q L+A
Sbjct: 1527 IRYCFYYRKCDMADDASDGKDELSYSIPM--KILPGMKLDEQVVPVVSRTLQVLDA 1580
>gi|89059963 PREDICTED: FERM and PDZ domain containing 3 [Homo
sapiens]
Length = 1810
Score = 28.9 bits (63), Expect = 4.2
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 15 LALGVRRAVLQLPGLTQVRWSRYSPEFKDP------LIDKEYYRKPVEELTEEE------ 62
+ALG + L+ P L + + +PE K P + +E YRKP E + E
Sbjct: 1467 IALGPKSRSLESPTLGDPSYVQVAPETKGPRQMAVFSLPEEVYRKPAELDEDSESSKCCS 1526
Query: 63 -KYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVLARSLMIQTLEA 117
+Y +K + A GK + P+ K M + V S +Q L+A
Sbjct: 1527 IRYCFYYRKCDMADDASDGKDELSYSIPM--KILPGMKLDEQVVPVVSRTLQVLDA 1580
>gi|22325356 PALM2-AKAP2 protein isoform 2 [Homo sapiens]
Length = 1090
Score = 28.1 bits (61), Expect = 7.2
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 41 FKDPLIDKEYYR----KPVEELTEEEKYVRELKKTQLIKAAP 78
F+D +KE Y +P EE+ E EK REL ++Q +K P
Sbjct: 425 FEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQAVKKNP 466
>gi|6005709 PALM2-AKAP2 protein isoform 1 [Homo sapiens]
Length = 1103
Score = 28.1 bits (61), Expect = 7.2
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 41 FKDPLIDKEYYR----KPVEELTEEEKYVRELKKTQLIKAAP 78
F+D +KE Y +P EE+ E EK REL ++Q +K P
Sbjct: 425 FEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQAVKKNP 466
>gi|211971074 A kinase (PRKA) anchor protein 2 isoform 2 [Homo
sapiens]
Length = 859
Score = 28.1 bits (61), Expect = 7.2
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 41 FKDPLIDKEYYR----KPVEELTEEEKYVRELKKTQLIKAAP 78
F+D +KE Y +P EE+ E EK REL ++Q +K P
Sbjct: 194 FEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQAVKKNP 235
>gi|51873058 A kinase (PRKA) anchor protein 2 isoform 1 [Homo
sapiens]
Length = 948
Score = 28.1 bits (61), Expect = 7.2
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 41 FKDPLIDKEYYR----KPVEELTEEEKYVRELKKTQLIKAAP 78
F+D +KE Y +P EE+ E EK REL ++Q +K P
Sbjct: 283 FEDDEHEKEQYCIRKVRPSEEMLELEKERRELIRSQAVKKNP 324
>gi|45643121 peroxisomal D3,D2-enoyl-CoA isomerase isoform 2 [Homo
sapiens]
Length = 227
Score = 28.1 bits (61), Expect = 7.2
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 69 KKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVLARSLMIQTLEAVKRKQFEKYHA 128
KK +A G + VF D K + K+ +L I E +++++ EK HA
Sbjct: 137 KKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISK-EVIRKREREKLHA 195
Query: 129 ASAEE 133
+AEE
Sbjct: 196 VNAEE 200
>gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Homo
sapiens]
Length = 364
Score = 28.1 bits (61), Expect = 7.2
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 69 KKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVLARSLMIQTLEAVKRKQFEKYHA 128
KK +A G + VF D K + K+ +L I E +++++ EK HA
Sbjct: 274 KKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISK-EVIRKREREKLHA 332
Query: 129 ASAEE 133
+AEE
Sbjct: 333 VNAEE 337
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 27.7 bits (60), Expect = 9.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 141 PYTIFHQALKNCEPMIGLVPILKGGRFYQVPVP 173
P + + ALKN + + VP L GG+F P+P
Sbjct: 2537 PTSSSNDALKNLKALKTTVPALLGGQFLPFPLP 2569
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 27.7 bits (60), Expect = 9.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 141 PYTIFHQALKNCEPMIGLVPILKGGRFYQVPVP 173
P + + ALKN + + VP L GG+F P+P
Sbjct: 2453 PTSSSNDALKNLKALKTTVPALLGGQFLPFPLP 2485
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 27.7 bits (60), Expect = 9.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 141 PYTIFHQALKNCEPMIGLVPILKGGRFYQVPVP 173
P + + ALKN + + VP L GG+F P+P
Sbjct: 2453 PTSSSNDALKNLKALKTTVPALLGGQFLPFPLP 2485
>gi|106507301 DNA-directed DNA polymerase alpha 1 [Homo sapiens]
Length = 1462
Score = 27.7 bits (60), Expect = 9.4
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 19 VRRAVLQLPGLTQVRWSRYSPEFKDPLIDKEYYRKPVEELTEEEKYVRELKKTQ 72
V+R + +T+ PE DP ++ + + +L E K V++L K Q
Sbjct: 879 VQRVASEAQKVTEDGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQ 932
>gi|117606355 furry homolog [Homo sapiens]
Length = 3013
Score = 27.7 bits (60), Expect = 9.4
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 174 LPDRRRRFLAMKWMITECRDKKHQRTLMPEK-LSHKLLEAFHN-QGPVIKRKHDLHKMAE 231
L D R F AM + +C H+R L P++ L H L F GP L + ++
Sbjct: 1087 LKDIRAHFSAMVANLIQCVPVHHRRFLFPQQSLRHHLFILFSQWAGPFSIMFTPLDRYSD 1146
Query: 232 ANRALAHYRW 241
N + Y++
Sbjct: 1147 RNHQITRYQY 1156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,193,357
Number of Sequences: 37866
Number of extensions: 401115
Number of successful extensions: 1251
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1239
Number of HSP's gapped (non-prelim): 31
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.