Guide to the Human Genome
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Name: PPT2 Sequence: fasta or formatted (302aa) NCBI GI: 18677774
Description:

palmitoyl-protein thioesterase 2 isoform a precursor

Referenced in:

Lysosomes and Related Organelles

Other entries for this name:
alt prot [308aa] palmitoyl-protein thioesterase 2 isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         18           2
 C cysteine            2.0          6           1
 D aspartate           5.3         16           2
 E glutamate           4.3         13           2
 F phenylalanine       4.6         14           2
 G glycine             7.0         21           2
 H histidine           4.3         13           2
 I isoleucine          4.3         13           1
 K lysine              1.7          5           1
 L leucine            13.9         42           4
 M methionine          2.3          7           1
 N asparagine          3.3         10           1
 P proline             6.3         19           1
 Q glutamine           3.3         10           1
 R arginine            5.3         16           1
 S serine              7.6         23           2
 T threonine           4.0         12           1
 V valine              7.0         21           2
 W tryptophan          3.3         10           1
 Y tyrosine            4.3         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   palmitoyl-protein thioesterase 2 isoform a precursor... 
PPT2                  1.000   palmitoyl-protein thioesterase 2 isoform b precursor...
PPT1                  0.088   palmitoyl-protein thioesterase 1 isoform 1 precursor ...
PPT1                  0.065   palmitoyl-protein thioesterase 1 isoform 2 precurso...
STAT5B                0.010   signal transducer and activator of transcription 5B ...
PCDHGC5               0.007   protocadherin gamma subfamily C, 5 isoform 2 precurs...
PCDHGC5               0.007   protocadherin gamma subfamily C, 5 isoform 1 precurs...
CNPY3                 0.007   trinucleotide repeat containing 5 
SSPO                  0.007   SCO-spondin 
FAM135A               0.005   hypothetical protein LOC57579 isoform c 
FAM135A               0.005   hypothetical protein LOC57579 isoform b 
FAM135A               0.005   hypothetical protein LOC57579 isoform a 
PGAP1                 0.005   GPI deacylase 
RIN1                  0.005   ras inhibitor RIN1 
GPR124                0.005   G protein-coupled receptor 124 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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