Guide to the Human Genome
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Name: PGAP1 Sequence: fasta or formatted (922aa) NCBI GI: 46240862
Description:

GPI deacylase

Referenced in:

GPI Anchoring

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         51           1
 C cysteine            2.0         18           2
 D aspartate           3.1         29           1
 E glutamate           3.9         36           2
 F phenylalanine       6.0         55           2
 G glycine             3.8         35           2
 H histidine           3.5         32           2
 I isoleucine          6.4         59           3
 K lysine              6.8         63           3
 L leucine            13.9        128           3
 M methionine          1.8         17           1
 N asparagine          3.8         35           2
 P proline             4.6         42           1
 Q glutamine           2.8         26           1
 R arginine            2.9         27           2
 S serine              9.0         83           2
 T threonine           6.1         56           2
 V valine              7.0         65           2
 W tryptophan          1.8         17           1
 Y tyrosine            5.2         48           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GPI deacylase 
BIRC6                 0.004   baculoviral IAP repeat-containing 6 
FAM135A               0.004   hypothetical protein LOC57579 isoform c 
FAM135A               0.004   hypothetical protein LOC57579 isoform b 
FAM135A               0.004   hypothetical protein LOC57579 isoform a 
SLC7A14               0.004   solute carrier family 7 (cationic amino acid transp...
DNMT1                 0.003   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...
DNMT1                 0.003   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
MYST3                 0.003   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.003   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.003   MYST histone acetyltransferase (monocytic leukemia)...
FAM135B               0.003   hypothetical protein LOC51059 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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