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Search of human proteins with 183227688
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|183227688 adenylosuccinate lyase isoform b [Homo sapiens]
(425 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|183227688 adenylosuccinate lyase isoform b [Homo sapiens] 852 0.0
gi|4557269 adenylosuccinate lyase isoform a [Homo sapiens] 798 0.0
gi|19743875 fumarate hydratase precursor [Homo sapiens] 43 6e-04
gi|34452732 phosphatidylinositol-3,4,5-trisphosphate-dependent R... 32 1.1
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 31 2.4
gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens] 31 2.4
gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens] 31 2.4
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens] 31 2.4
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens] 31 2.4
gi|5032285 dystrophin Dp427l isoform [Homo sapiens] 31 2.4
gi|5032283 dystrophin Dp427m isoform [Homo sapiens] 31 2.4
gi|157502179 tetratricopeptide repeat domain 21A isoform 1 [Homo... 30 4.2
gi|157502177 tetratricopeptide repeat domain 21A isoform 2 [Homo... 30 4.2
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 30 5.4
gi|76096366 phospholipase B1 [Homo sapiens] 30 5.4
gi|4507621 fast-twitch skeletal muscle troponin I isoform 1 [Hom... 29 7.1
gi|224967106 fast-twitch skeletal muscle troponin I isoform 2 [H... 29 7.1
gi|224967057 fast-twitch skeletal muscle troponin I isoform 1 [H... 29 7.1
gi|157671915 guanylate binding protein family, member 6 [Homo sa... 29 9.3
gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens] 29 9.3
>gi|183227688 adenylosuccinate lyase isoform b [Homo sapiens]
Length = 425
Score = 852 bits (2202), Expect = 0.0
Identities = 425/425 (100%), Positives = 425/425 (100%)
Query: 1 MAAGGDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDE 60
MAAGGDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDE
Sbjct: 1 MAAGGDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDE 60
Query: 61 QIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTD 120
QIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTD
Sbjct: 61 QIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTD 120
Query: 121 LIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLC 180
LIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLC
Sbjct: 121 LIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLC 180
Query: 181 MDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG 240
MDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG
Sbjct: 181 MDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG 240
Query: 241 QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMR 300
QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMR
Sbjct: 241 QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMR 300
Query: 301 SERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISE 360
SERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISE
Sbjct: 301 SERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISE 360
Query: 361 GLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQVQRFLEEEVYPLLKPYESVMKVK 420
GLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQVQRFLEEEVYPLLKPYESVMKVK
Sbjct: 361 GLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQVQRFLEEEVYPLLKPYESVMKVK 420
Query: 421 AELCL 425
AELCL
Sbjct: 421 AELCL 425
>gi|4557269 adenylosuccinate lyase isoform a [Homo sapiens]
Length = 484
Score = 798 bits (2060), Expect = 0.0
Identities = 397/397 (100%), Positives = 397/397 (100%)
Query: 1 MAAGGDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDE 60
MAAGGDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDE
Sbjct: 1 MAAGGDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDE 60
Query: 61 QIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTD 120
QIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTD
Sbjct: 61 QIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTD 120
Query: 121 LIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLC 180
LIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLC
Sbjct: 121 LIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLC 180
Query: 181 MDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG 240
MDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG
Sbjct: 181 MDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG 240
Query: 241 QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMR 300
QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMR
Sbjct: 241 QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMR 300
Query: 301 SERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISE 360
SERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISE
Sbjct: 301 SERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISE 360
Query: 361 GLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQ 397
GLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQ
Sbjct: 361 GLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQ 397
Score = 63.2 bits (152), Expect = 4e-10
Identities = 30/31 (96%), Positives = 31/31 (100%)
Query: 395 SRQVQRFLEEEVYPLLKPYESVMKVKAELCL 425
S+QVQRFLEEEVYPLLKPYESVMKVKAELCL
Sbjct: 454 SQQVQRFLEEEVYPLLKPYESVMKVKAELCL 484
>gi|19743875 fumarate hydratase precursor [Homo sapiens]
Length = 510
Score = 42.7 bits (99), Expect = 6e-04
Identities = 59/267 (22%), Positives = 106/267 (39%), Gaps = 22/267 (8%)
Query: 129 DLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKR 188
++LLP L ++ L +KE A + +G TH Q A T+G+ ++Q + + +K
Sbjct: 205 EVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKA 264
Query: 189 VRDDLRFRGVKGT-TGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKV 247
+ GT GT G + ++ +K+ + A +T +
Sbjct: 265 AMPRIYELAAGGTAVGT---------GLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEAL 315
Query: 248 D-----IEVLSVLASLGASVHKICTDIRLL-----ANLKEMEEPFEKQQIGSSAMPYKRN 297
+E+ + + S+ KI DIR L + L E+ P + + GSS MP K N
Sbjct: 316 AAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILP--ENEPGSSIMPGKVN 373
Query: 298 PMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQN 357
P + E +A +M + S FE + + L A L D ++ +N
Sbjct: 374 PTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTEN 433
Query: 358 ISEGLVVYPKVIERRIRQELPFMATEN 384
G+ + I + + + L + N
Sbjct: 434 CVVGIQANTERINKLMNESLMLVTALN 460
>gi|34452732 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac
exchange factor 1 [Homo sapiens]
Length = 1659
Score = 32.0 bits (71), Expect = 1.1
Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 49 AEQTLGLPITDEQIQEMKSN---LENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGI 105
AE+ LP+ E+ + +S+ ++ + FK+A E+++ HD M++ ++ C +
Sbjct: 1121 AEEASSLPLVSEESEMDRSDHGGIKKVCFKVAEEDQEDSGHDTMSYRDSYSECNSNRDSV 1180
Query: 106 I---HLGATSCYVGDN 118
+ + + S Y+G +
Sbjct: 1181 LSYTSVRSNSSYLGSD 1196
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 30.8 bits (68), Expect = 2.4
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 25 EMCFVFSDRYKF------------RTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENI 72
E+C SDR K R + LWL EA+ +P+ + Q++K LE +
Sbjct: 2186 EVCKQLSDRKKRLEEQKNILSEFQRDLNEFVLWLEEADNIASIPLEPGKEQQLKEKLEQV 2245
Query: 73 DFKMAAEEEKRLRHDVMAHVHTFG 96
+ EE LR ++ ++ G
Sbjct: 2246 KLLV---EELPLRQGILKQLNETG 2266
>gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]
Length = 2341
Score = 30.8 bits (68), Expect = 2.4
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 25 EMCFVFSDRYKF------------RTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENI 72
E+C SDR K R + LWL EA+ +P+ + Q++K LE +
Sbjct: 850 EVCKQLSDRKKRLEEQKNILSEFQRDLNEFVLWLEEADNIASIPLEPGKEQQLKEKLEQV 909
Query: 73 DFKMAAEEEKRLRHDVMAHVHTFG 96
+ EE LR ++ ++ G
Sbjct: 910 KLLV---EELPLRQGILKQLNETG 930
>gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]
Length = 2344
Score = 30.8 bits (68), Expect = 2.4
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 25 EMCFVFSDRYKF------------RTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENI 72
E+C SDR K R + LWL EA+ +P+ + Q++K LE +
Sbjct: 853 EVCKQLSDRKKRLEEQKNILSEFQRDLNEFVLWLEEADNIASIPLEPGKEQQLKEKLEQV 912
Query: 73 DFKMAAEEEKRLRHDVMAHVHTFG 96
+ EE LR ++ ++ G
Sbjct: 913 KLLV---EELPLRQGILKQLNETG 933
>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
Length = 3562
Score = 30.8 bits (68), Expect = 2.4
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 25 EMCFVFSDRYKF------------RTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENI 72
E+C SDR K R + LWL EA+ +P+ + Q++K LE +
Sbjct: 2071 EVCKQLSDRKKRLEEQKNILSEFQRDLNEFVLWLEEADNIASIPLEPGKEQQLKEKLEQV 2130
Query: 73 DFKMAAEEEKRLRHDVMAHVHTFG 96
+ EE LR ++ ++ G
Sbjct: 2131 KLLV---EELPLRQGILKQLNETG 2151
>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
Length = 3681
Score = 30.8 bits (68), Expect = 2.4
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 25 EMCFVFSDRYKF------------RTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENI 72
E+C SDR K R + LWL EA+ +P+ + Q++K LE +
Sbjct: 2190 EVCKQLSDRKKRLEEQKNILSEFQRDLNEFVLWLEEADNIASIPLEPGKEQQLKEKLEQV 2249
Query: 73 DFKMAAEEEKRLRHDVMAHVHTFG 96
+ EE LR ++ ++ G
Sbjct: 2250 KLLV---EELPLRQGILKQLNETG 2270
>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
Length = 3562
Score = 30.8 bits (68), Expect = 2.4
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 25 EMCFVFSDRYKF------------RTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENI 72
E+C SDR K R + LWL EA+ +P+ + Q++K LE +
Sbjct: 2071 EVCKQLSDRKKRLEEQKNILSEFQRDLNEFVLWLEEADNIASIPLEPGKEQQLKEKLEQV 2130
Query: 73 DFKMAAEEEKRLRHDVMAHVHTFG 96
+ EE LR ++ ++ G
Sbjct: 2131 KLLV---EELPLRQGILKQLNETG 2151
>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
Length = 3685
Score = 30.8 bits (68), Expect = 2.4
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 25 EMCFVFSDRYKF------------RTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENI 72
E+C SDR K R + LWL EA+ +P+ + Q++K LE +
Sbjct: 2194 EVCKQLSDRKKRLEEQKNILSEFQRDLNEFVLWLEEADNIASIPLEPGKEQQLKEKLEQV 2253
Query: 73 DFKMAAEEEKRLRHDVMAHVHTFG 96
+ EE LR ++ ++ G
Sbjct: 2254 KLLV---EELPLRQGILKQLNETG 2274
>gi|157502179 tetratricopeptide repeat domain 21A isoform 1 [Homo
sapiens]
Length = 1321
Score = 30.0 bits (66), Expect = 4.2
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 170 KRCCLWIQDLCMDLQ-NLKRVRDDLRFRGVKGTTGTQAS-FLQLFEGDDHKVEQLDKMVT 227
KRC + ++ +L+ +LK +R + V GT A FL L D E +D+M+
Sbjct: 84 KRCEIIDREAIQELEYSLKEIR-----KTVSGTALYYAGLFLWLIGRHDKAKEYIDRMLK 138
Query: 228 EKAGFKRAFIITG-------QTYTRKVDIEVL 252
GF+ A+++ G + +T K IE L
Sbjct: 139 ISRGFREAYVLRGWVDLTSDKPHTAKKAIEYL 170
>gi|157502177 tetratricopeptide repeat domain 21A isoform 2 [Homo
sapiens]
Length = 1320
Score = 30.0 bits (66), Expect = 4.2
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 170 KRCCLWIQDLCMDLQ-NLKRVRDDLRFRGVKGTTGTQAS-FLQLFEGDDHKVEQLDKMVT 227
KRC + ++ +L+ +LK +R + V GT A FL L D E +D+M+
Sbjct: 84 KRCEIIDREAIQELEYSLKEIR-----KTVSGTALYYAGLFLWLIGRHDKAKEYIDRMLK 138
Query: 228 EKAGFKRAFIITG-------QTYTRKVDIEVL 252
GF+ A+++ G + +T K IE L
Sbjct: 139 ISRGFREAYVLRGWVDLTSDKPHTAKKAIEYL 170
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 29.6 bits (65), Expect = 5.4
Identities = 11/30 (36%), Positives = 23/30 (76%)
Query: 59 DEQIQEMKSNLENIDFKMAAEEEKRLRHDV 88
++Q++EMK+ LE ++ ++ A E+ +LR +V
Sbjct: 1531 EQQVEEMKTQLEELEDELQATEDAKLRLEV 1560
>gi|76096366 phospholipase B1 [Homo sapiens]
Length = 1458
Score = 29.6 bits (65), Expect = 5.4
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 124 LRNALDLLLPKLARVISRLADFAKERASLPT-LGFTHFQPAQLTTVGKRCCLWIQDLCMD 182
LRNALD+L ++ RV+ L DF LG P Q +V C L +++ +
Sbjct: 881 LRNALDVLHREVPRVLVNLVDFLNPTIMRQVFLGNPDKCPVQQASVLCNCVLTLRENSQE 940
Query: 183 LQNL----KRVRDDLRFRGVKGTTGTQASF 208
L L + R +R G TQ F
Sbjct: 941 LARLEAFSRAYRSSMRELVGSGRYDTQEDF 970
>gi|4507621 fast-twitch skeletal muscle troponin I isoform 1 [Homo
sapiens]
Length = 182
Score = 29.3 bits (64), Expect = 7.1
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 245 RKVDIEVLSVLASLGASVHKICTDIRLLANLKEM-EEPFEKQQ 286
R+V + ++L +L S HK+C D+R ANLK++ +E EK++
Sbjct: 113 RRVRMSADAMLKALLGSKHKVCMDLR--ANLKQVKKEDTEKER 153
>gi|224967106 fast-twitch skeletal muscle troponin I isoform 2 [Homo
sapiens]
Length = 182
Score = 29.3 bits (64), Expect = 7.1
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 245 RKVDIEVLSVLASLGASVHKICTDIRLLANLKEM-EEPFEKQQ 286
R+V + ++L +L S HK+C D+R ANLK++ +E EK++
Sbjct: 113 RRVRMSADAMLKALLGSKHKVCMDLR--ANLKQVKKEDTEKER 153
>gi|224967057 fast-twitch skeletal muscle troponin I isoform 1 [Homo
sapiens]
Length = 182
Score = 29.3 bits (64), Expect = 7.1
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 245 RKVDIEVLSVLASLGASVHKICTDIRLLANLKEM-EEPFEKQQ 286
R+V + ++L +L S HK+C D+R ANLK++ +E EK++
Sbjct: 113 RRVRMSADAMLKALLGSKHKVCMDLR--ANLKQVKKEDTEKER 153
>gi|157671915 guanylate binding protein family, member 6 [Homo
sapiens]
Length = 633
Score = 28.9 bits (63), Expect = 9.3
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 15/109 (13%)
Query: 47 AEAEQTLGLPITDEQIQEM-------KSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCC 99
AE EQ L EQ Q+M K N+ + K+ E E LR +M HT
Sbjct: 498 AEKEQELLKQKLQEQQQQMEAQDKSRKENIAQLKEKLQMEREHLLREQIMMLEHT----Q 553
Query: 100 PKAAGIIHLGATSCYVGDNTDLIILRNALDLL----LPKLARVISRLAD 144
+H G Y N ++ + +D P +AR + LAD
Sbjct: 554 KVQNDWLHEGFKKKYEEMNAEISQFKRMIDTTKNDDTPWIARTLDNLAD 602
>gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens]
Length = 326
Score = 28.9 bits (63), Expect = 9.3
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 193 LRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVL 252
L F+G+ GT G Q F++L EG DH L+ T F+ I+ G++ + K + +
Sbjct: 144 LPFQGI-GTFGNQVGFVKLAEG-DHVNSLLEIAETANRTFQEKGILVGESRSFKPHLTFM 201
Query: 253 SVLAS 257
+ S
Sbjct: 202 KLSKS 206
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,646,642
Number of Sequences: 37866
Number of extensions: 575186
Number of successful extensions: 1493
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1488
Number of HSP's gapped (non-prelim): 21
length of query: 425
length of database: 18,247,518
effective HSP length: 105
effective length of query: 320
effective length of database: 14,271,588
effective search space: 4566908160
effective search space used: 4566908160
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.