Search of human proteins with 17471847

Search of human proteins with 17471847

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|17471847 PREDICTED: hypothetical protein LOC119358 [Homo
sapiens]
         (117 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17471847 PREDICTED: hypothetical protein LOC119358 [Homo sapi...   239   3e-64
gi|169201734 PREDICTED: similar to hCG2040270 [Homo sapiens]          236   2e-63
gi|89033538 PREDICTED: similar to hCG2040270 [Homo sapiens]           236   2e-63
gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo sa...   206   2e-54
gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo ...   191   1e-49
gi|7657315 Lsm3 protein [Homo sapiens]                                 36   0.006
gi|46370057 ring finger protein 216 isoform b [Homo sapiens]           28   1.2  
gi|46358403 ring finger protein 216 isoform a [Homo sapiens]           28   1.2  
gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo ...    27   3.5  
gi|148747864 JAW1-related protein isoform a [Homo sapiens]             27   4.5  
gi|154091334 JAW1-related protein isoform c [Homo sapiens]             27   4.5  
gi|154091332 JAW1-related protein isoform b [Homo sapiens]             27   4.5  
gi|148728182 JAW1-related protein isoform b [Homo sapiens]             27   4.5  
gi|134142826 pericentriolar material 1 [Homo sapiens]                  26   5.9  

>gi|17471847 PREDICTED: hypothetical protein LOC119358 [Homo
           sapiens]
          Length = 117

 Score =  239 bits (611), Expect = 3e-64
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MSLLNKSKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60
           MSLLNKSKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH
Sbjct: 1   MSLLNKSKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60

Query: 61  RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
           RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK
Sbjct: 61  RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117


>gi|169201734 PREDICTED: similar to hCG2040270 [Homo sapiens]
          Length = 117

 Score =  236 bits (603), Expect = 2e-63
 Identities = 116/117 (99%), Positives = 116/117 (99%)

Query: 1   MSLLNKSKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60
           MSLLNKSKSEMTPEELQKREEEEFNTG LSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH
Sbjct: 1   MSLLNKSKSEMTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60

Query: 61  RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
           RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK
Sbjct: 61  RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117


>gi|89033538 PREDICTED: similar to hCG2040270 [Homo sapiens]
          Length = 117

 Score =  236 bits (603), Expect = 2e-63
 Identities = 116/117 (99%), Positives = 116/117 (99%)

Query: 1   MSLLNKSKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60
           MSLLNKSKSEMTPEELQKREEEEFNTG LSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH
Sbjct: 1   MSLLNKSKSEMTPEELQKREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60

Query: 61  RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
           RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK
Sbjct: 61  RHCNMVLENVKETWTEVPKSGKGKKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117


>gi|4759158 small nuclear ribonucleoprotein D2 isoform 1 [Homo
           sapiens]
          Length = 118

 Score =  206 bits (525), Expect = 2e-54
 Identities = 106/118 (89%), Positives = 108/118 (91%), Gaps = 1/118 (0%)

Query: 1   MSLLNKSKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFH 60
           MSLLNK KSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCR+N KLLG VKAF 
Sbjct: 1   MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60

Query: 61  RHCNMVLENVKETWTEVPKSGKG-KKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
           RHCNMVLENVKE WTEVPKSGKG KKSKPVNKD YIS+MFL GD VIVVLRNPLIA K
Sbjct: 61  RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 118


>gi|237649049 small nuclear ribonucleoprotein D2 isoform 2 [Homo
           sapiens]
          Length = 108

 Score =  191 bits (484), Expect = 1e-49
 Identities = 97/108 (89%), Positives = 99/108 (91%), Gaps = 1/108 (0%)

Query: 11  MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENV 70
           MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCR+N KLLG VKAF RHCNMVLENV
Sbjct: 1   MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 60

Query: 71  KETWTEVPKSGKG-KKSKPVNKDCYISRMFLHGDLVIVVLRNPLIASK 117
           KE WTEVPKSGKG KKSKPVNKD YIS+MFL GD VIVVLRNPLIA K
Sbjct: 61  KEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK 108


>gi|7657315 Lsm3 protein [Homo sapiens]
          Length = 102

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 28  PLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENVKETWTEVPKSGKGKKSK 87
           PL ++  S+  + ++ +  R++ +L G + A+ +H NM+L +V+ET T +    +  +  
Sbjct: 17  PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query: 88  PVNKDCYISRMFLHGDLVIVV 108
             +    I  +F+ GD V++V
Sbjct: 75  YKSTKRNIPMLFVRGDGVVLV 95


>gi|46370057 ring finger protein 216 isoform b [Homo sapiens]
          Length = 866

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 53  LGHVKAFHRHCNMVLENVKETWTEVPK--SGKGKKSKPVNKDCYISRMFLHGDLVI 106
           L  +K  +      L +  + W E+    SGK KK K +N+  YI   F  GD+ I
Sbjct: 394 LHELKGHYAITRKALSDAIKKWQELSPETSGKRKKRKQMNQYSYIDFKFEQGDIKI 449


>gi|46358403 ring finger protein 216 isoform a [Homo sapiens]
          Length = 923

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 53  LGHVKAFHRHCNMVLENVKETWTEVPK--SGKGKKSKPVNKDCYISRMFLHGDLVI 106
           L  +K  +      L +  + W E+    SGK KK K +N+  YI   F  GD+ I
Sbjct: 451 LHELKGHYAITRKALSDAIKKWQELSPETSGKRKKRKQMNQYSYIDFKFEQGDIKI 506


>gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo
          sapiens]
          Length = 186

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 10/54 (18%)

Query: 52 LLGHVKAF-HRHCNM---------VLENVKETWTEVPKSGKGKKSKPVNKDCYI 95
          LL +V+++  +HC           VLEN K  + E P++GK ++   +N  C I
Sbjct: 3  LLEYVQSYAEKHCKKETMCSNPKNVLENNKVIYWECPETGKAEEDATMNPCCPI 56


>gi|148747864 JAW1-related protein isoform a [Homo sapiens]
          Length = 903

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 6   KSKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLIN--CRH 48
           KS+S   PEE+++ EEEE   GP S   + + +  QV+    C+H
Sbjct: 800 KSESPEEPEEVEETEEEE--KGPRSSKLEELVHFLQVMYPKLCQH 842


>gi|154091334 JAW1-related protein isoform c [Homo sapiens]
          Length = 597

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 6   KSKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLIN--CRH 48
           KS+S   PEE+++ EEEE   GP S   + + +  QV+    C+H
Sbjct: 494 KSESPEEPEEVEETEEEE--KGPRSSKLEELVHFLQVMYPKLCQH 536


>gi|154091332 JAW1-related protein isoform b [Homo sapiens]
          Length = 821

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 6   KSKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLIN--CRH 48
           KS+S   PEE+++ EEEE   GP S   + + +  QV+    C+H
Sbjct: 718 KSESPEEPEEVEETEEEE--KGPRSSKLEELVHFLQVMYPKLCQH 760


>gi|148728182 JAW1-related protein isoform b [Homo sapiens]
          Length = 821

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 6   KSKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLIN--CRH 48
           KS+S   PEE+++ EEEE   GP S   + + +  QV+    C+H
Sbjct: 718 KSESPEEPEEVEETEEEE--KGPRSSKLEELVHFLQVMYPKLCQH 760


>gi|134142826 pericentriolar material 1 [Homo sapiens]
          Length = 2024

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 14   EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRHNTKLL 53
            +E +  E EEF  GP+ V T S++ NT+      H+ ++L
Sbjct: 1801 DENEDEEMEEFEEGPVDVQT-SLQANTEATEENEHDEQVL 1839


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,480,060
Number of Sequences: 37866
Number of extensions: 173133
Number of successful extensions: 673
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 18
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.