Guide to the Human Genome
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Name: LOC121296 Sequence: fasta or formatted (199aa) NCBI GI: 169205620
Description:

PREDICTED: similar to TMEM132B protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {199aa} PREDICTED: similar to TMEM132B protein
alt mRNA {199aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0          6           1
 C cysteine            2.0          4           1
 D aspartate           4.5          9           1
 E glutamate           6.0         12           2
 F phenylalanine       6.5         13           2
 G glycine             5.5         11           1
 H histidine           3.0          6           1
 I isoleucine          6.5         13           2
 K lysine              5.0         10           1
 L leucine            10.1         20           2
 M methionine          2.5          5           1
 N asparagine          5.5         11           1
 P proline             4.5          9           1
 Q glutamine           3.5          7           2
 R arginine            5.5         11           1
 S serine              8.5         17           2
 T threonine           4.5          9           2
 V valine              7.5         15           2
 W tryptophan          2.0          4           1
 Y tyrosine            3.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to TMEM132B protein 
LOC121296             1.000   PREDICTED: similar to TMEM132B protein 
LOC121296             1.000   PREDICTED: hypothetical protein 
TMEM132B              0.747   transmembrane protein 132B 
TMEM132C              0.349   transmembrane protein 132C 
TMEM132D              0.344   transmembrane protein 132D 
TMEM132E              0.173   transmembrane protein 132E 
TMEM132A              0.109   transmembrane protein 132A isoform a 
TMEM132A              0.109   transmembrane protein 132A isoform b 
PPP2R3A               0.010   protein phosphatase 2, regulatory subunit B'', alpha...
NOL8                  0.008   nucleolar protein 8 
SLC6A16               0.008   solute carrier family 6, member 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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