Search of human proteins with 169217174

Search of human proteins with 169217174

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169217174 PREDICTED: H2B histone family, member M [Homo
sapiens]
         (248 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens]   477   e-135
gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]   461   e-130
gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens]   461   e-130
gi|50897288 H2B histone family, member W, testis-specific [Homo ...   208   4e-54
gi|4504259 histone cluster 1, H2bl [Homo sapiens]                     100   1e-21
gi|18105048 histone cluster 1, H2bk [Homo sapiens]                    100   2e-21
gi|21396484 histone cluster 1, H2be [Homo sapiens]                    100   2e-21
gi|4504265 histone cluster 1, H2bf [Homo sapiens]                     100   2e-21
gi|4504257 histone cluster 1, H2bg [Homo sapiens]                     100   2e-21
gi|21166389 histone cluster 1, H2bc [Homo sapiens]                    100   2e-21
gi|4504271 histone cluster 1, H2bi [Homo sapiens]                     100   2e-21
gi|4504277 histone cluster 2, H2be [Homo sapiens]                     100   2e-21
gi|20336754 histone cluster 1, H2bj [Homo sapiens]                    100   2e-21
gi|4504269 histone cluster 1, H2bh [Homo sapiens]                      99   3e-21
gi|16306566 histone cluster 1, H2bo [Homo sapiens]                     99   3e-21
gi|4504261 histone cluster 1, H2bn [Homo sapiens]                      99   3e-21
gi|10800138 histone cluster 1, H2bd [Homo sapiens]                     99   4e-21
gi|20336752 histone cluster 1, H2bd [Homo sapiens]                     99   4e-21
gi|10800140 histone cluster 1, H2bb [Homo sapiens]                     99   4e-21
gi|238624110 histone cluster 2, H2bf isoform b [Homo sapiens]          98   6e-21
gi|66912162 histone cluster 2, H2bf isoform a [Homo sapiens]           98   6e-21
gi|28173554 histone cluster 3, H2bb [Homo sapiens]                     98   8e-21
gi|4504263 histone cluster 1, H2bm [Homo sapiens]                      98   8e-21
gi|24586679 histone cluster 1, H2ba [Homo sapiens]                     97   1e-20
gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]        36   0.036
gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens]           34   0.10 
gi|169167761 PREDICTED: similar to HIStone family member (his-72...    33   0.30 
gi|88987392 PREDICTED: similar to HIStone family member (his-72)...    33   0.30 
gi|41147170 PREDICTED: similar to HIStone family member (his-72)...    33   0.30 
gi|168229156 NFKB activating protein [Homo sapiens]                    32   0.39 

>gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 248

 Score =  477 bits (1228), Expect = e-135
 Identities = 248/248 (100%), Positives = 248/248 (100%)

Query: 1   MAFIVVLDAGXXXXXXXXXPITVGVCGPKRPLWPSSEKPFNFHTLTKLHDIGLGNDFLDM 60
           MAFIVVLDAG         PITVGVCGPKRPLWPSSEKPFNFHTLTKLHDIGLGNDFLDM
Sbjct: 1   MAFIVVLDAGXXXXXXXXXPITVGVCGPKRPLWPSSEKPFNFHTLTKLHDIGLGNDFLDM 60

Query: 61  TLKAQQQKQKSHATIPKCPPLPWSPTVTLCSCYLMAAASAMAEASSETTSEEGQSIQEPK 120
           TLKAQQQKQKSHATIPKCPPLPWSPTVTLCSCYLMAAASAMAEASSETTSEEGQSIQEPK
Sbjct: 61  TLKAQQQKQKSHATIPKCPPLPWSPTVTLCSCYLMAAASAMAEASSETTSEEGQSIQEPK 120

Query: 121 EANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVSVMD 180
           EANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVH GLSLSQEAVSVMD
Sbjct: 121 EANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVSVMD 180

Query: 181 SMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALRTSL 240
           SMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALRTSL
Sbjct: 181 SMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALRTSL 240

Query: 241 CAIWQQRK 248
           CAIWQQRK
Sbjct: 241 CAIWQQRK 248


>gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 257

 Score =  461 bits (1185), Expect = e-130
 Identities = 227/229 (99%), Positives = 227/229 (99%)

Query: 20  PITVGVCGPKRPLWPSSEKPFNFHTLTKLHDIGLGNDFLDMTLKAQQQKQKSHATIPKCP 79
           PITVGVCGPKRPLWPSSEKPFNFHTL KLHDIGLGNDFLDMTLKAQQQKQKSHATIPKCP
Sbjct: 29  PITVGVCGPKRPLWPSSEKPFNFHTLAKLHDIGLGNDFLDMTLKAQQQKQKSHATIPKCP 88

Query: 80  PLPWSPTVTLCSCYLMAAASAMAEASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSR 139
           PLPWSPTVTLCSCYLMAAASAMAEASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSR
Sbjct: 89  PLPWSPTVTLCSCYLMAAASAMAEASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSR 148

Query: 140 RRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVSVMDSMIHDILDRIATEAGQLAH 199
           RRHANRRGDSFGDSFTPYFPRVLKQVH GLSLSQEAVSVMDSMIHDILDRIATEAGQLAH
Sbjct: 149 RRHANRRGDSFGDSFTPYFPRVLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAH 208

Query: 200 YTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALRTSLCAIWQQRK 248
           YTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALRTSLCAIWQQRK
Sbjct: 209 YTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALRTSLCAIWQQRK 257


>gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 257

 Score =  461 bits (1185), Expect = e-130
 Identities = 227/229 (99%), Positives = 227/229 (99%)

Query: 20  PITVGVCGPKRPLWPSSEKPFNFHTLTKLHDIGLGNDFLDMTLKAQQQKQKSHATIPKCP 79
           PITVGVCGPKRPLWPSSEKPFNFHTL KLHDIGLGNDFLDMTLKAQQQKQKSHATIPKCP
Sbjct: 29  PITVGVCGPKRPLWPSSEKPFNFHTLAKLHDIGLGNDFLDMTLKAQQQKQKSHATIPKCP 88

Query: 80  PLPWSPTVTLCSCYLMAAASAMAEASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSR 139
           PLPWSPTVTLCSCYLMAAASAMAEASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSR
Sbjct: 89  PLPWSPTVTLCSCYLMAAASAMAEASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSR 148

Query: 140 RRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVSVMDSMIHDILDRIATEAGQLAH 199
           RRHANRRGDSFGDSFTPYFPRVLKQVH GLSLSQEAVSVMDSMIHDILDRIATEAGQLAH
Sbjct: 149 RRHANRRGDSFGDSFTPYFPRVLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAH 208

Query: 200 YTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALRTSLCAIWQQRK 248
           YTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALRTSLCAIWQQRK
Sbjct: 209 YTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALRTSLCAIWQQRK 257


>gi|50897288 H2B histone family, member W, testis-specific [Homo
           sapiens]
          Length = 175

 Score =  208 bits (529), Expect = 4e-54
 Identities = 118/173 (68%), Positives = 133/173 (76%), Gaps = 7/173 (4%)

Query: 79  PPLPWSPTVTLCSCYLMAAASAMAEASSETTSEEGQSIQEPKEANSTKAQKQ---KRRGC 135
           P LP S T  + SC+LMA ASAMA  SSETTSEE    QEPKEANST +QKQ   ++RG 
Sbjct: 7   PRLPRSTTAIVWSCHLMATASAMAGPSSETTSEEQLITQEPKEANSTTSQKQSKQRKRGR 66

Query: 136 RGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVSVMDSMIHDILDRIATEAG 195
            G RR H+N RGDSF      YF RVLKQVH GLSLS+EAVSVMDS++HDILDRIATEAG
Sbjct: 67  HGPRRCHSNCRGDSFAT----YFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAG 122

Query: 196 QLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALRTSLCAIWQQRK 248
            LA  TKR TIT+ + +MAVRLLLPG+MGKLAE++GT A LRTSL AI QQRK
Sbjct: 123 HLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLRTSLYAIQQQRK 175


>gi|4504259 histone cluster 1, H2bl [Homo sapiens]
          Length = 126

 Score =  100 bits (249), Expect = 1e-21
 Identities = 52/120 (43%), Positives = 81/120 (67%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P+ A S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PELAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA+EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|18105048 histone cluster 1, H2bk [Homo sapiens]
          Length = 126

 Score =  100 bits (248), Expect = 2e-21
 Identities = 52/120 (43%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P+ A S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|21396484 histone cluster 1, H2be [Homo sapiens]
          Length = 126

 Score =  100 bits (248), Expect = 2e-21
 Identities = 52/120 (43%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P+ A S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|4504265 histone cluster 1, H2bf [Homo sapiens]
          Length = 126

 Score =  100 bits (248), Expect = 2e-21
 Identities = 52/120 (43%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P+ A S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|4504257 histone cluster 1, H2bg [Homo sapiens]
          Length = 126

 Score =  100 bits (248), Expect = 2e-21
 Identities = 52/120 (43%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P+ A S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|21166389 histone cluster 1, H2bc [Homo sapiens]
          Length = 126

 Score =  100 bits (248), Expect = 2e-21
 Identities = 52/120 (43%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P+ A S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|4504271 histone cluster 1, H2bi [Homo sapiens]
          Length = 126

 Score =  100 bits (248), Expect = 2e-21
 Identities = 52/120 (43%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P+ A S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|4504277 histone cluster 2, H2be [Homo sapiens]
          Length = 126

 Score = 99.8 bits (247), Expect = 2e-21
 Identities = 52/120 (43%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P+ A S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|20336754 histone cluster 1, H2bj [Homo sapiens]
          Length = 126

 Score = 99.8 bits (247), Expect = 2e-21
 Identities = 52/120 (43%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P+ A S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|4504269 histone cluster 1, H2bh [Homo sapiens]
          Length = 126

 Score = 99.4 bits (246), Expect = 3e-21
 Identities = 52/120 (43%), Positives = 79/120 (65%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P  A S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PDPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|16306566 histone cluster 1, H2bo [Homo sapiens]
          Length = 126

 Score = 99.0 bits (245), Expect = 3e-21
 Identities = 52/120 (43%), Positives = 79/120 (65%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P  A S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PDPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|4504261 histone cluster 1, H2bn [Homo sapiens]
          Length = 126

 Score = 99.0 bits (245), Expect = 3e-21
 Identities = 51/120 (42%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P+ + S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PEPSKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|10800138 histone cluster 1, H2bd [Homo sapiens]
          Length = 126

 Score = 98.6 bits (244), Expect = 4e-21
 Identities = 51/120 (42%), Positives = 79/120 (65%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P+   S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|20336752 histone cluster 1, H2bd [Homo sapiens]
          Length = 126

 Score = 98.6 bits (244), Expect = 4e-21
 Identities = 51/120 (42%), Positives = 79/120 (65%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P+   S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|10800140 histone cluster 1, H2bb [Homo sapiens]
          Length = 126

 Score = 98.6 bits (244), Expect = 4e-21
 Identities = 51/120 (42%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P+ + S  A K+  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PEPSKSAPAPKKGSKKAITKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|238624110 histone cluster 2, H2bf isoform b [Homo sapiens]
          Length = 134

 Score = 98.2 bits (243), Expect = 6e-21
 Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P  A S  A K+  ++     +++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PDPAKSAPAPKKGSKKAVTKVQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|66912162 histone cluster 2, H2bf isoform a [Homo sapiens]
          Length = 126

 Score = 98.2 bits (243), Expect = 6e-21
 Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 1/120 (0%)

Query: 119 PKEANSTKAQKQ-KRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           P  A S  A K+  ++     +++   +R  S  +S++ Y  +VLKQVH    +S +A+ 
Sbjct: 2   PDPAKSAPAPKKGSKKAVTKVQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMG 61

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S ++DI +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 62  IMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|28173554 histone cluster 3, H2bb [Homo sapiens]
          Length = 126

 Score = 97.8 bits (242), Expect = 8e-21
 Identities = 54/130 (41%), Positives = 83/130 (63%), Gaps = 14/130 (10%)

Query: 111 EEGQSIQEPKEANS---TKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHX 167
           +  +S   PK+ +    TKAQK+      G +R+   +      +S++ Y  +VLKQVH 
Sbjct: 3   DPSKSAPAPKKGSKKAVTKAQKKD-----GKKRKRGRK------ESYSIYVYKVLKQVHP 51

Query: 168 GLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLA 227
              +S +A+ +M+S ++DI +RIA+EA +LAHY KR TITSR++Q AVRLLLPG++ K A
Sbjct: 52  DTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHA 111

Query: 228 EAQGTNAALR 237
            ++GT A  +
Sbjct: 112 VSEGTKAVTK 121


>gi|4504263 histone cluster 1, H2bm [Homo sapiens]
          Length = 126

 Score = 97.8 bits (242), Expect = 8e-21
 Identities = 48/110 (43%), Positives = 75/110 (68%)

Query: 128 QKQKRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVSVMDSMIHDIL 187
           +K  ++    ++++   +R  S  +S++ Y  +VLKQVH    +S +A+ +M+S ++DI 
Sbjct: 12  KKGSKKAINKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIF 71

Query: 188 DRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +RIA EA +LAHY KR TITSR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 72  ERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTK 121


>gi|24586679 histone cluster 1, H2ba [Homo sapiens]
          Length = 127

 Score = 97.4 bits (241), Expect = 1e-20
 Identities = 49/120 (40%), Positives = 81/120 (67%)

Query: 118 EPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPYFPRVLKQVHXGLSLSQEAVS 177
           E     +T ++K  ++    ++++   +R  +  +S++ Y  +VLKQVH    +S +A+S
Sbjct: 3   EVSSKGATISKKGFKKAVVKTQKKEGKKRKRTRKESYSIYIYKVLKQVHPDTGISSKAMS 62

Query: 178 VMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 237
           +M+S + DI +RIA+EA +LAHY+KR TI+SR+IQ AVRLLLPG++ K A ++GT A  +
Sbjct: 63  IMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTK 122


>gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]
          Length = 3996

 Score = 35.8 bits (81), Expect = 0.036
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 81   LPWSPTVTLCSCYLMAAASAMAEASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRR 140
            LP + +VT  S    A A  ++++SS ++S  GQ+ Q P   +  K  K KR     S +
Sbjct: 2847 LPTNMSVT-ASGVTSATAPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSGK 2905

Query: 141  RHANRRGDS 149
            R ++R  DS
Sbjct: 2906 RQSSRTVDS 2914


>gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens]
          Length = 147

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 104 ASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPY------ 157
           A ++ T+ +  + Q P++  +TKA +++     G ++ H  + G         Y      
Sbjct: 2   ARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQL 61

Query: 158 ------FPRVLKQVHXGLS----LSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTIT 207
                 F R+++++   +S        A+  +       L ++  +    A + +RVTI 
Sbjct: 62  LLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121

Query: 208 SRDIQMAVRL 217
            RD+Q+A RL
Sbjct: 122 PRDMQLARRL 131


>gi|169167761 PREDICTED: similar to HIStone family member (his-72)
           [Homo sapiens]
          Length = 136

 Score = 32.7 bits (73), Expect = 0.30
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 104 ASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPY------ 157
           A ++ T+ +  + Q P++  +TKA  ++     G ++ H  + G         Y      
Sbjct: 2   ARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQL 61

Query: 158 ------FPRVLKQVHXGLS----LSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTIT 207
                 F R+++++   +S        A+  +       L ++  +    A + +RVTI 
Sbjct: 62  LLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121

Query: 208 SRDIQMAVRLLLPG 221
            RD+Q+A RL   G
Sbjct: 122 PRDMQLARRLRREG 135


>gi|88987392 PREDICTED: similar to HIStone family member (his-72)
           [Homo sapiens]
          Length = 136

 Score = 32.7 bits (73), Expect = 0.30
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 104 ASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPY------ 157
           A ++ T+ +  + Q P++  +TKA  ++     G ++ H  + G         Y      
Sbjct: 2   ARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQL 61

Query: 158 ------FPRVLKQVHXGLS----LSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTIT 207
                 F R+++++   +S        A+  +       L ++  +    A + +RVTI 
Sbjct: 62  LLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121

Query: 208 SRDIQMAVRLLLPG 221
            RD+Q+A RL   G
Sbjct: 122 PRDMQLARRLRREG 135


>gi|41147170 PREDICTED: similar to HIStone family member (his-72)
           [Homo sapiens]
          Length = 136

 Score = 32.7 bits (73), Expect = 0.30
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 104 ASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPY------ 157
           A ++ T+ +  + Q P++  +TKA  ++     G ++ H  + G         Y      
Sbjct: 2   ARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQL 61

Query: 158 ------FPRVLKQVHXGLS----LSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTIT 207
                 F R+++++   +S        A+  +       L ++  +    A + +RVTI 
Sbjct: 62  LLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121

Query: 208 SRDIQMAVRLLLPG 221
            RD+Q+A RL   G
Sbjct: 122 PRDMQLARRLRREG 135


>gi|168229156 NFKB activating protein [Homo sapiens]
          Length = 415

 Score = 32.3 bits (72), Expect = 0.39
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 103 EASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDS 153
           E    TTS      ++ K+++ +K + +KRR  + S+R+H     DS  DS
Sbjct: 167 EPKKSTTSASTSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKYSEDSDSDS 217


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,472,266
Number of Sequences: 37866
Number of extensions: 325359
Number of successful extensions: 1676
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1619
Number of HSP's gapped (non-prelim): 78
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.