Search of human proteins with 169215858

Search of human proteins with 169215858

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169215858 PREDICTED: similar to ribosomal protein L3,
partial [Homo sapiens]
         (126 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169215858 PREDICTED: similar to ribosomal protein L3, partial...   253   4e-68
gi|4506649 ribosomal protein L3 isoform a [Homo sapiens]              253   4e-68
gi|76496472 ribosomal protein L3 isoform b [Homo sapiens]             253   4e-68
gi|4826988 ribosomal protein L3-like [Homo sapiens]                   184   1e-47
gi|157311649 neogenin homolog 1 [Homo sapiens]                         27   3.2  
gi|157266296 placental-like alkaline phosphatase preproprotein [...    27   4.1  
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]    27   5.4  
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]    27   5.4  
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]    27   5.4  
gi|17149834 sortilin 1 preproprotein [Homo sapiens]                    26   7.0  
gi|51317366 myosin XVIIIB [Homo sapiens]                               26   7.0  

>gi|169215858 PREDICTED: similar to ribosomal protein L3, partial
           [Homo sapiens]
          Length = 126

 Score =  253 bits (645), Expect = 4e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV 60
           TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV
Sbjct: 1   TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV 60

Query: 61  VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI 120
           VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI
Sbjct: 61  VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI 120

Query: 121 AKEEGA 126
           AKEEGA
Sbjct: 121 AKEEGA 126


>gi|4506649 ribosomal protein L3 isoform a [Homo sapiens]
          Length = 403

 Score =  253 bits (645), Expect = 4e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV 60
           TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV
Sbjct: 278 TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV 337

Query: 61  VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI 120
           VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI
Sbjct: 338 VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI 397

Query: 121 AKEEGA 126
           AKEEGA
Sbjct: 398 AKEEGA 403


>gi|76496472 ribosomal protein L3 isoform b [Homo sapiens]
          Length = 354

 Score =  253 bits (645), Expect = 4e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV 60
           TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV
Sbjct: 229 TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV 288

Query: 61  VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI 120
           VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI
Sbjct: 289 VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRI 348

Query: 121 AKEEGA 126
           AKEEGA
Sbjct: 349 AKEEGA 354


>gi|4826988 ribosomal protein L3-like [Homo sapiens]
          Length = 407

 Score =  184 bits (468), Expect = 1e-47
 Identities = 87/117 (74%), Positives = 103/117 (88%)

Query: 1   TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV 60
           TE+NKKI++IG+G  ++DGKL+KNNAST YD++ KSI PLGGF HYGEV NDFVMLKGC+
Sbjct: 278 TELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCI 337

Query: 61  VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKK 117
            GTKKRV+TLRKSLLV   R+A+E I+LKFIDTTSKFGHGRFQT +EK+AFMGP KK
Sbjct: 338 AGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK 394


>gi|157311649 neogenin homolog 1 [Homo sapiens]
          Length = 1461

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 15/66 (22%), Positives = 29/66 (43%)

Query: 20  KLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTK 79
           K +KN  + D + S++ +   GG +   +VT D      C+       +  +  L VQ +
Sbjct: 281 KWMKNEEALDTESSERLVLLAGGSLEISDVTEDDAGTYFCIADNGNETIEAQAELTVQAQ 340

Query: 80  RRALEK 85
              L++
Sbjct: 341 PEFLKQ 346


>gi|157266296 placental-like alkaline phosphatase preproprotein
           [Homo sapiens]
          Length = 532

 Score = 26.9 bits (58), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 7   IYKIGQGYLIKDGKL--IKNNASTDYDLSDKSINPLGGFVHYGE 48
           +Y  G GY++KDG    +  + S   +   +S  PL G  H GE
Sbjct: 411 LYGNGPGYVLKDGARPDVTESESGSPEYRQQSAVPLDGETHAGE 454


>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 11/62 (17%)

Query: 7   IYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKR 66
           +YK GQ        + K + S  +D SDK  +PLG  VH     ++  + +  V+G + +
Sbjct: 66  VYKNGQA------GITKASVSITFDNSDKKQSPLGFEVH-----DEITVTRQVVIGGRNK 114

Query: 67  VL 68
            L
Sbjct: 115 YL 116


>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 11/62 (17%)

Query: 7   IYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKR 66
           +YK GQ        + K + S  +D SDK  +PLG  VH     ++  + +  V+G + +
Sbjct: 66  VYKNGQA------GITKASVSITFDNSDKKQSPLGFEVH-----DEITVTRQVVIGGRNK 114

Query: 67  VL 68
            L
Sbjct: 115 YL 116


>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 11/62 (17%)

Query: 7   IYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKR 66
           +YK GQ        + K + S  +D SDK  +PLG  VH     ++  + +  V+G + +
Sbjct: 66  VYKNGQA------GITKASVSITFDNSDKKQSPLGFEVH-----DEITVTRQVVIGGRNK 114

Query: 67  VL 68
            L
Sbjct: 115 YL 116


>gi|17149834 sortilin 1 preproprotein [Homo sapiens]
          Length = 831

 Score = 26.2 bits (56), Expect = 7.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 58  GCVVGTKKRVLTLRKSLLVQTKR 80
           GC++G K++ L LRKS + Q  R
Sbjct: 633 GCILGYKEQFLRLRKSSVCQNGR 655


>gi|51317366 myosin XVIIIB [Homo sapiens]
          Length = 2567

 Score = 26.2 bits (56), Expect = 7.0
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 45   HYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQT 104
            H  E+     + + CV G K+R+  L  S L Q K ++ ++  +K ++   +    RF+ 
Sbjct: 1668 HKRELLGSPSLGENCVAGLKERLWKLESSALEQQKIQSQQENTIKQLEQLRQ----RFEL 1723

Query: 105  MEEKKAFMGPLKKDRIAKEE 124
              E+   M   +KDR  +EE
Sbjct: 1724 EIERMKQMH--QKDREDQEE 1741


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.138    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,175,256
Number of Sequences: 37866
Number of extensions: 150298
Number of successful extensions: 274
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 11
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.