Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC284890 Sequence: fasta or formatted (176aa) NCBI GI: 169215618
Description:

PREDICTED: similar to Glutathione S-transferase theta-4

Referenced in:

Glutathione Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         16           2
 C cysteine            1.1          2           1
 D aspartate           4.5          8           1
 E glutamate           8.5         15           2
 F phenylalanine       4.5          8           1
 G glycine             1.7          3           1
 H histidine           2.8          5           1
 I isoleucine          4.5          8           1
 K lysine              7.4         13           2
 L leucine            11.9         21           2
 M methionine          5.7         10           2
 N asparagine          4.0          7           1
 P proline             4.0          7           2
 Q glutamine           4.0          7           1
 R arginine            4.5          8           1
 S serine              7.4         13           2
 T threonine           2.3          4           1
 V valine              6.8         12           2
 W tryptophan          2.8          5           1
 Y tyrosine            2.3          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Glutathione S-transferase the... 
GSTT1                 0.382   glutathione S-transferase theta 1 
GSTT2                 0.279   glutathione S-transferase theta 2 
GSTT2B                0.279   glutathione S-transferase theta 2B 
DNAH10                0.015   dynein, axonemal, heavy chain 10 
AFAP1L2               0.015   KIAA1914 protein isoform 1 
AFAP1L2               0.015   KIAA1914 protein isoform 2 
ZNF483                0.015   zinc finger protein 483 isoform b 
ZNF483                0.015   zinc finger protein 483 isoform a 
HEATR4                0.009   HEAT repeat containing 4 
GAS2L3                0.009   growth arrest-specific 2 like 3 
ZNF397OS              0.009   zinc finger protein 397 opposite strand 
COLEC12               0.009   collectin sub-family member 12 
ZNF287                0.009   zinc finger protein 287 
EEF1E1                0.006   eukaryotic translation elongation factor 1 epsilon ...
EEF1E1                0.006   eukaryotic translation elongation factor 1 epsilon 1 ...
C14orf45              0.006   hypothetical protein LOC80127 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press