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Search of human proteins with 169212344
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169212344 PREDICTED: similar to NADH dehydrogenase
(ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
sapiens]
(106 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169212344 PREDICTED: similar to NADH dehydrogenase (ubiquinon... 227 2e-60
gi|169211738 PREDICTED: similar to NADH dehydrogenase (ubiquinon... 227 2e-60
gi|169211073 PREDICTED: similar to NADH dehydrogenase (ubiquinon... 227 2e-60
gi|4758790 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa... 198 7e-52
gi|239752823 PREDICTED: similar to NADH dehydrogenase [ubiquinon... 160 2e-40
gi|239747390 PREDICTED: hypothetical protein XP_002346575 [Homo ... 160 2e-40
gi|239741215 PREDICTED: hypothetical protein XP_002342136 [Homo ... 160 2e-40
gi|19923193 heat shock 70kD protein binding protein [Homo sapiens] 30 0.32
gi|240255483 sulfatase 2 isoform a precursor [Homo sapiens] 30 0.42
gi|240255478 sulfatase 2 isoform b precursor [Homo sapiens] 30 0.42
gi|29789100 sulfatase 2 isoform a precursor [Homo sapiens] 30 0.42
gi|5453980 DnaJ (Hsp40) homolog, subfamily C, member 3 [Homo sap... 27 2.7
gi|148277620 type I hair keratin KA35 [Homo sapiens] 26 6.1
gi|116256475 zinc finger protein 827 [Homo sapiens] 26 6.1
gi|224451077 HBV PreS1-transactivated protein 3 isoform b [Homo ... 26 7.9
gi|93102389 HBV PreS1-transactivated protein 3 isoform a [Homo s... 26 7.9
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 26 7.9
gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens] 26 7.9
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 26 7.9
gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens] 26 7.9
>gi|169212344 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
sapiens]
Length = 106
Score = 227 bits (578), Expect = 2e-60
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES
Sbjct: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
>gi|169211738 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
sapiens]
Length = 106
Score = 227 bits (578), Expect = 2e-60
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES
Sbjct: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
>gi|169211073 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
sapiens]
Length = 106
Score = 227 bits (578), Expect = 2e-60
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES
Sbjct: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
>gi|4758790 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
Length = 106
Score = 198 bits (504), Expect = 7e-52
Identities = 92/106 (86%), Positives = 97/106 (91%)
Query: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
MPFL IQKRFGLNID+W TIQS EQPYK+A RCHAFEKEWIECA+GI RAEKECKIE
Sbjct: 1 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
DDFVECLLRQKTMRRAGTIRKQ+DKLIKEGKYTPPPHHIGK EP+P
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP 106
>gi|239752823 PREDICTED: similar to NADH dehydrogenase [ubiquinone]
iron-sulfur protein 5 [Homo sapiens]
Length = 203
Score = 160 bits (405), Expect = 2e-40
Identities = 76/105 (72%), Positives = 84/105 (80%)
Query: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
MPFL +QKRFGLN D W TIQSAEQPYKI AR H FEKEW ECA+GI I EKEC+IE
Sbjct: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQ 105
D F+EC+L QK MR TIRKQ +KLIKEGKYTPPPHH+GK EP+
Sbjct: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPR 105
>gi|239747390 PREDICTED: hypothetical protein XP_002346575 [Homo
sapiens]
Length = 203
Score = 160 bits (405), Expect = 2e-40
Identities = 76/105 (72%), Positives = 84/105 (80%)
Query: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
MPFL +QKRFGLN D W TIQSAEQPYKI AR H FEKEW ECA+GI I EKEC+IE
Sbjct: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQ 105
D F+EC+L QK MR TIRKQ +KLIKEGKYTPPPHH+GK EP+
Sbjct: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPR 105
>gi|239741215 PREDICTED: hypothetical protein XP_002342136 [Homo
sapiens]
Length = 203
Score = 160 bits (405), Expect = 2e-40
Identities = 76/105 (72%), Positives = 84/105 (80%)
Query: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
MPFL +QKRFGLN D W TIQSAEQPYKI AR H FEKEW ECA+GI I EKEC+IE
Sbjct: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
Query: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQ 105
D F+EC+L QK MR TIRKQ +KLIKEGKYTPPPHH+GK EP+
Sbjct: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPR 105
>gi|19923193 heat shock 70kD protein binding protein [Homo sapiens]
Length = 369
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 25 QPYKIAARCHAFEKEWIECAYGISVIRAEKECKIESDDFVECLLRQKTMR-------RAG 77
QPYK + H W E A+ +++ CK++ D+ +L++ R R
Sbjct: 183 QPYKWRGKAHRLLGHWEEAAHDLAL-----ACKLDYDEDASAMLKEVQPRAQKIAEHRRK 237
Query: 78 TIRKQQDKLIKE 89
RK++++ IKE
Sbjct: 238 YERKREEREIKE 249
>gi|240255483 sulfatase 2 isoform a precursor [Homo sapiens]
Length = 870
Score = 30.0 bits (66), Expect = 0.42
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 22 SAEQPYKIAARCHAFEKEWIECAYGI-SVIRAEKECKIESDDFVECLLRQ-KTMRRA-GT 78
SA P K+ RC+ E + ++C + ++A K+ K+ D +E L + K +R G
Sbjct: 592 SAANPIKVTHRCYILENDTVQCDLDLYKSLQAWKDHKLHIDHEIETLQNKIKNLREVRGH 651
Query: 79 IRKQQDKLIKEGKYTPPPHHIGK 101
++K++ + K + H G+
Sbjct: 652 LKKKRPEECDCHKISYHTQHKGR 674
>gi|240255478 sulfatase 2 isoform b precursor [Homo sapiens]
Length = 867
Score = 30.0 bits (66), Expect = 0.42
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 22 SAEQPYKIAARCHAFEKEWIECAYGI-SVIRAEKECKIESDDFVECLLRQ-KTMRRA-GT 78
SA P K+ RC+ E + ++C + ++A K+ K+ D +E L + K +R G
Sbjct: 592 SAANPIKVTHRCYILENDTVQCDLDLYKSLQAWKDHKLHIDHEIETLQNKIKNLREVRGH 651
Query: 79 IRKQQDKLIKEGKYTPPPHHIGK 101
++K++ + K + H G+
Sbjct: 652 LKKKRPEECDCHKISYHTQHKGR 674
>gi|29789100 sulfatase 2 isoform a precursor [Homo sapiens]
Length = 870
Score = 30.0 bits (66), Expect = 0.42
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 22 SAEQPYKIAARCHAFEKEWIECAYGI-SVIRAEKECKIESDDFVECLLRQ-KTMRRA-GT 78
SA P K+ RC+ E + ++C + ++A K+ K+ D +E L + K +R G
Sbjct: 592 SAANPIKVTHRCYILENDTVQCDLDLYKSLQAWKDHKLHIDHEIETLQNKIKNLREVRGH 651
Query: 79 IRKQQDKLIKEGKYTPPPHHIGK 101
++K++ + K + H G+
Sbjct: 652 LKKKRPEECDCHKISYHTQHKGR 674
>gi|5453980 DnaJ (Hsp40) homolog, subfamily C, member 3 [Homo
sapiens]
Length = 504
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 54 KECKIESDDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYT 93
+EC D C K +++ + + ++LI++G+YT
Sbjct: 246 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 285
>gi|148277620 type I hair keratin KA35 [Homo sapiens]
Length = 491
Score = 26.2 bits (56), Expect = 6.1
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 13 NIDQWWTIQSAEQPYKIAARCH---AFEKEWIECAYGISVIRAEKECKIESDDFVECLLR 69
+++QW+ Q E ++ +KE IE ++ + E + + D EC+L
Sbjct: 282 DVEQWFNTQIEELNQQVVTSSQQQQCCQKEIIELRRSVNTLEVELQAQHRMRDSQECILT 341
Query: 70 QKTMRRAGTIRKQQ 83
+ R + + Q
Sbjct: 342 ETEARYTALLTQIQ 355
>gi|116256475 zinc finger protein 827 [Homo sapiens]
Length = 1077
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 67 LLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
LL++ R AG++ ++ L+ E PPP E+ P
Sbjct: 290 LLKEVAARAAGSLLAEKSSLLPEDPLPPPPSEKKPEKVTP 329
>gi|224451077 HBV PreS1-transactivated protein 3 isoform b [Homo
sapiens]
Length = 399
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 37 EKEWIECAYGISVIRAEKECKIESDDFVECLLRQ-KTMRRAGTIRKQQDKLIKEGKYTPP 95
+K++I+C + AE + +I D + C++++ K + I QQ K I GK PP
Sbjct: 93 KKQFIQCGF------AEWKIQIVCD-ILNCVMKKHKELSSLQKIPSQQRKKISSGKSEPP 145
>gi|93102389 HBV PreS1-transactivated protein 3 isoform a [Homo
sapiens]
Length = 390
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 37 EKEWIECAYGISVIRAEKECKIESDDFVECLLRQ-KTMRRAGTIRKQQDKLIKEGKYTPP 95
+K++I+C + AE + +I D + C++++ K + I QQ K I GK PP
Sbjct: 93 KKQFIQCGF------AEWKIQIVCD-ILNCVMKKHKELSSLQKIPSQQRKKISSGKSEPP 145
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 60 SDDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYT 93
S+ ++ ++++ R+A T+ DKL+ E K T
Sbjct: 2200 SESALQTVIKEDLPRKAKTLSSNSDKLLNEAKMT 2233
>gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens]
Length = 1668
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 60 SDDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYT 93
S+ ++ ++++ R+A T+ DKL+ E K T
Sbjct: 535 SESALQTVIKEDLPRKAKTLSSNSDKLLNEAKMT 568
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 60 SDDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYT 93
S+ ++ ++++ R+A T+ DKL+ E K T
Sbjct: 2144 SESALQTVIKEDLPRKAKTLSSNSDKLLNEAKMT 2177
>gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens]
Length = 1724
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 60 SDDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYT 93
S+ ++ ++++ R+A T+ DKL+ E K T
Sbjct: 591 SESALQTVIKEDLPRKAKTLSSNSDKLLNEAKMT 624
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,732,483
Number of Sequences: 37866
Number of extensions: 188825
Number of successful extensions: 512
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 20
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.