Guide to the Human Genome
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Search of human proteins with 169212344

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169212344 PREDICTED: similar to NADH dehydrogenase
(ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
sapiens]
         (106 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169212344 PREDICTED: similar to NADH dehydrogenase (ubiquinon...   227   2e-60
gi|169211738 PREDICTED: similar to NADH dehydrogenase (ubiquinon...   227   2e-60
gi|169211073 PREDICTED: similar to NADH dehydrogenase (ubiquinon...   227   2e-60
gi|4758790 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa...   198   7e-52
gi|239752823 PREDICTED: similar to NADH dehydrogenase [ubiquinon...   160   2e-40
gi|239747390 PREDICTED: hypothetical protein XP_002346575 [Homo ...   160   2e-40
gi|239741215 PREDICTED: hypothetical protein XP_002342136 [Homo ...   160   2e-40
gi|19923193 heat shock 70kD protein binding protein [Homo sapiens]     30   0.32 
gi|240255483 sulfatase 2 isoform a precursor [Homo sapiens]            30   0.42 
gi|240255478 sulfatase 2 isoform b precursor [Homo sapiens]            30   0.42 
gi|29789100 sulfatase 2 isoform a precursor [Homo sapiens]             30   0.42 
gi|5453980 DnaJ (Hsp40) homolog, subfamily C, member 3 [Homo sap...    27   2.7  
gi|148277620 type I hair keratin KA35 [Homo sapiens]                   26   6.1  
gi|116256475 zinc finger protein 827 [Homo sapiens]                    26   6.1  
gi|224451077 HBV PreS1-transactivated protein 3 isoform b [Homo ...    26   7.9  
gi|93102389 HBV PreS1-transactivated protein 3 isoform a [Homo s...    26   7.9  
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]           26   7.9  
gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens]          26   7.9  
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]          26   7.9  
gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens]           26   7.9  

>gi|169212344 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
           Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
           sapiens]
          Length = 106

 Score =  227 bits (578), Expect = 2e-60
 Identities = 106/106 (100%), Positives = 106/106 (100%)

Query: 1   MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
           MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES
Sbjct: 1   MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60

Query: 61  DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
           DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP
Sbjct: 61  DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106


>gi|169211738 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
           Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
           sapiens]
          Length = 106

 Score =  227 bits (578), Expect = 2e-60
 Identities = 106/106 (100%), Positives = 106/106 (100%)

Query: 1   MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
           MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES
Sbjct: 1   MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60

Query: 61  DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
           DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP
Sbjct: 61  DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106


>gi|169211073 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
           Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
           sapiens]
          Length = 106

 Score =  227 bits (578), Expect = 2e-60
 Identities = 106/106 (100%), Positives = 106/106 (100%)

Query: 1   MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
           MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES
Sbjct: 1   MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60

Query: 61  DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
           DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP
Sbjct: 61  DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106


>gi|4758790 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa
           (NADH-coenzyme Q reductase) [Homo sapiens]
          Length = 106

 Score =  198 bits (504), Expect = 7e-52
 Identities = 92/106 (86%), Positives = 97/106 (91%)

Query: 1   MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
           MPFL IQKRFGLNID+W TIQS EQPYK+A RCHAFEKEWIECA+GI   RAEKECKIE 
Sbjct: 1   MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY 60

Query: 61  DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
           DDFVECLLRQKTMRRAGTIRKQ+DKLIKEGKYTPPPHHIGK EP+P
Sbjct: 61  DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP 106


>gi|239752823 PREDICTED: similar to NADH dehydrogenase [ubiquinone]
           iron-sulfur protein 5 [Homo sapiens]
          Length = 203

 Score =  160 bits (405), Expect = 2e-40
 Identities = 76/105 (72%), Positives = 84/105 (80%)

Query: 1   MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
           MPFL +QKRFGLN D W TIQSAEQPYKI AR H FEKEW ECA+GI  I  EKEC+IE 
Sbjct: 1   MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60

Query: 61  DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQ 105
           D F+EC+L QK MR   TIRKQ +KLIKEGKYTPPPHH+GK EP+
Sbjct: 61  DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPR 105


>gi|239747390 PREDICTED: hypothetical protein XP_002346575 [Homo
           sapiens]
          Length = 203

 Score =  160 bits (405), Expect = 2e-40
 Identities = 76/105 (72%), Positives = 84/105 (80%)

Query: 1   MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
           MPFL +QKRFGLN D W TIQSAEQPYKI AR H FEKEW ECA+GI  I  EKEC+IE 
Sbjct: 1   MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60

Query: 61  DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQ 105
           D F+EC+L QK MR   TIRKQ +KLIKEGKYTPPPHH+GK EP+
Sbjct: 61  DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPR 105


>gi|239741215 PREDICTED: hypothetical protein XP_002342136 [Homo
           sapiens]
          Length = 203

 Score =  160 bits (405), Expect = 2e-40
 Identities = 76/105 (72%), Positives = 84/105 (80%)

Query: 1   MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
           MPFL +QKRFGLN D W TIQSAEQPYKI AR H FEKEW ECA+GI  I  EKEC+IE 
Sbjct: 1   MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60

Query: 61  DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQ 105
           D F+EC+L QK MR   TIRKQ +KLIKEGKYTPPPHH+GK EP+
Sbjct: 61  DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPR 105


>gi|19923193 heat shock 70kD protein binding protein [Homo sapiens]
          Length = 369

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 12/72 (16%)

Query: 25  QPYKIAARCHAFEKEWIECAYGISVIRAEKECKIESDDFVECLLRQKTMR-------RAG 77
           QPYK   + H     W E A+ +++      CK++ D+    +L++   R       R  
Sbjct: 183 QPYKWRGKAHRLLGHWEEAAHDLAL-----ACKLDYDEDASAMLKEVQPRAQKIAEHRRK 237

Query: 78  TIRKQQDKLIKE 89
             RK++++ IKE
Sbjct: 238 YERKREEREIKE 249


>gi|240255483 sulfatase 2 isoform a precursor [Homo sapiens]
          Length = 870

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 22  SAEQPYKIAARCHAFEKEWIECAYGI-SVIRAEKECKIESDDFVECLLRQ-KTMRRA-GT 78
           SA  P K+  RC+  E + ++C   +   ++A K+ K+  D  +E L  + K +R   G 
Sbjct: 592 SAANPIKVTHRCYILENDTVQCDLDLYKSLQAWKDHKLHIDHEIETLQNKIKNLREVRGH 651

Query: 79  IRKQQDKLIKEGKYTPPPHHIGK 101
           ++K++ +     K +    H G+
Sbjct: 652 LKKKRPEECDCHKISYHTQHKGR 674


>gi|240255478 sulfatase 2 isoform b precursor [Homo sapiens]
          Length = 867

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 22  SAEQPYKIAARCHAFEKEWIECAYGI-SVIRAEKECKIESDDFVECLLRQ-KTMRRA-GT 78
           SA  P K+  RC+  E + ++C   +   ++A K+ K+  D  +E L  + K +R   G 
Sbjct: 592 SAANPIKVTHRCYILENDTVQCDLDLYKSLQAWKDHKLHIDHEIETLQNKIKNLREVRGH 651

Query: 79  IRKQQDKLIKEGKYTPPPHHIGK 101
           ++K++ +     K +    H G+
Sbjct: 652 LKKKRPEECDCHKISYHTQHKGR 674


>gi|29789100 sulfatase 2 isoform a precursor [Homo sapiens]
          Length = 870

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 22  SAEQPYKIAARCHAFEKEWIECAYGI-SVIRAEKECKIESDDFVECLLRQ-KTMRRA-GT 78
           SA  P K+  RC+  E + ++C   +   ++A K+ K+  D  +E L  + K +R   G 
Sbjct: 592 SAANPIKVTHRCYILENDTVQCDLDLYKSLQAWKDHKLHIDHEIETLQNKIKNLREVRGH 651

Query: 79  IRKQQDKLIKEGKYTPPPHHIGK 101
           ++K++ +     K +    H G+
Sbjct: 652 LKKKRPEECDCHKISYHTQHKGR 674


>gi|5453980 DnaJ (Hsp40) homolog, subfamily C, member 3 [Homo
           sapiens]
          Length = 504

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 54  KECKIESDDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYT 93
           +EC     D   C    K +++   + +  ++LI++G+YT
Sbjct: 246 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 285


>gi|148277620 type I hair keratin KA35 [Homo sapiens]
          Length = 491

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 13  NIDQWWTIQSAEQPYKIAARCH---AFEKEWIECAYGISVIRAEKECKIESDDFVECLLR 69
           +++QW+  Q  E   ++          +KE IE    ++ +  E + +    D  EC+L 
Sbjct: 282 DVEQWFNTQIEELNQQVVTSSQQQQCCQKEIIELRRSVNTLEVELQAQHRMRDSQECILT 341

Query: 70  QKTMRRAGTIRKQQ 83
           +   R    + + Q
Sbjct: 342 ETEARYTALLTQIQ 355


>gi|116256475 zinc finger protein 827 [Homo sapiens]
          Length = 1077

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 67  LLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQP 106
           LL++   R AG++  ++  L+ E    PPP     E+  P
Sbjct: 290 LLKEVAARAAGSLLAEKSSLLPEDPLPPPPSEKKPEKVTP 329


>gi|224451077 HBV PreS1-transactivated protein 3 isoform b [Homo
           sapiens]
          Length = 399

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)

Query: 37  EKEWIECAYGISVIRAEKECKIESDDFVECLLRQ-KTMRRAGTIRKQQDKLIKEGKYTPP 95
           +K++I+C +      AE + +I  D  + C++++ K +     I  QQ K I  GK  PP
Sbjct: 93  KKQFIQCGF------AEWKIQIVCD-ILNCVMKKHKELSSLQKIPSQQRKKISSGKSEPP 145


>gi|93102389 HBV PreS1-transactivated protein 3 isoform a [Homo
           sapiens]
          Length = 390

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)

Query: 37  EKEWIECAYGISVIRAEKECKIESDDFVECLLRQ-KTMRRAGTIRKQQDKLIKEGKYTPP 95
           +K++I+C +      AE + +I  D  + C++++ K +     I  QQ K I  GK  PP
Sbjct: 93  KKQFIQCGF------AEWKIQIVCD-ILNCVMKKHKELSSLQKIPSQQRKKISSGKSEPP 145


>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
          Length = 3333

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 60   SDDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYT 93
            S+  ++ ++++   R+A T+    DKL+ E K T
Sbjct: 2200 SESALQTVIKEDLPRKAKTLSSNSDKLLNEAKMT 2233


>gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens]
          Length = 1668

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 60  SDDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYT 93
           S+  ++ ++++   R+A T+    DKL+ E K T
Sbjct: 535 SESALQTVIKEDLPRKAKTLSSNSDKLLNEAKMT 568


>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
          Length = 3277

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 60   SDDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYT 93
            S+  ++ ++++   R+A T+    DKL+ E K T
Sbjct: 2144 SESALQTVIKEDLPRKAKTLSSNSDKLLNEAKMT 2177


>gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens]
          Length = 1724

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 60  SDDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYT 93
           S+  ++ ++++   R+A T+    DKL+ E K T
Sbjct: 591 SESALQTVIKEDLPRKAKTLSSNSDKLLNEAKMT 624


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,732,483
Number of Sequences: 37866
Number of extensions: 188825
Number of successful extensions: 512
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 20
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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