Search of human proteins with 169208214

Search of human proteins with 169208214

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169208214 PREDICTED: similar to COMM domain containing 4
[Homo sapiens]
         (422 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169208214 PREDICTED: similar to COMM domain containing 4 [Hom...   865   0.0  
gi|169208948 PREDICTED: similar to COMM domain containing 4 [Hom...   847   0.0  
gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens]          267   2e-71
gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens]          232   4e-61
gi|239745242 PREDICTED: similar to COMM domain containing 4 [Hom...   232   4e-61
gi|21361661 COMM domain containing 4 [Homo sapiens]                   231   7e-61
gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens]         32   0.83 
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]        32   0.83 
gi|161019170 mucin 5AC [Homo sapiens]                                  32   1.4  
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]     32   1.4  
gi|171543895 ataxin 2 [Homo sapiens]                                   32   1.4  
gi|239756093 PREDICTED: hypothetical protein [Homo sapiens]            31   2.4  
gi|239750624 PREDICTED: hypothetical protein XP_002347476 [Homo ...    31   2.4  
gi|211904177 hypothetical protein LOC388336 [Homo sapiens]             30   3.2  
gi|7706663 COMM domain containing 10 [Homo sapiens]                    30   5.4  
gi|21361460 Kv channel interacting protein 2 isoform 1 [Homo sap...    29   7.0  
gi|22538453 phosphatidylinositol glycan anchor biosynthesis, cla...    29   7.0  
gi|59710104 plexin A3 [Homo sapiens]                                   29   9.2  

>gi|169208214 PREDICTED: similar to COMM domain containing 4 [Homo
           sapiens]
          Length = 422

 Score =  865 bits (2236), Expect = 0.0
 Identities = 422/422 (100%), Positives = 422/422 (100%)

Query: 1   MRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPSLSRVGRRFRFCGDLDCPDRV 60
           MRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPSLSRVGRRFRFCGDLDCPDRV
Sbjct: 1   MRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPSLSRVGRRFRFCGDLDCPDRV 60

Query: 61  LAEISTLAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFI 120
           LAEISTLAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFI
Sbjct: 61  LAEISTLAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFI 120

Query: 121 LSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLRREYGSSPG 180
           LSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLRREYGSSPG
Sbjct: 121 LSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLRREYGSSPG 180

Query: 181 LELRDLRIRGHIWQGGPAWSAHGQGRYHVGSPRPDTTAPVSPLHFHPAHHLHYALSLMNP 240
           LELRDLRIRGHIWQGGPAWSAHGQGRYHVGSPRPDTTAPVSPLHFHPAHHLHYALSLMNP
Sbjct: 181 LELRDLRIRGHIWQGGPAWSAHGQGRYHVGSPRPDTTAPVSPLHFHPAHHLHYALSLMNP 240

Query: 241 SCQLLSAWLGSHADRSPLEHLEPKKLSLTFAIPGTRPLIMMKVDPNPLRGLKEQRLWRWP 300
           SCQLLSAWLGSHADRSPLEHLEPKKLSLTFAIPGTRPLIMMKVDPNPLRGLKEQRLWRWP
Sbjct: 241 SCQLLSAWLGSHADRSPLEHLEPKKLSLTFAIPGTRPLIMMKVDPNPLRGLKEQRLWRWP 300

Query: 301 SSLVAIWLIHSSRWTLCPHVVQVPLCHLQTGHASPRASVPCYPAPTPRGRGTSGIGRRGL 360
           SSLVAIWLIHSSRWTLCPHVVQVPLCHLQTGHASPRASVPCYPAPTPRGRGTSGIGRRGL
Sbjct: 301 SSLVAIWLIHSSRWTLCPHVVQVPLCHLQTGHASPRASVPCYPAPTPRGRGTSGIGRRGL 360

Query: 361 CVPEVQRNLVPAAVNPYVMIFLPALFRVLVLAAVFGQMDVSDASKVLMCSSTKAACKKEV 420
           CVPEVQRNLVPAAVNPYVMIFLPALFRVLVLAAVFGQMDVSDASKVLMCSSTKAACKKEV
Sbjct: 361 CVPEVQRNLVPAAVNPYVMIFLPALFRVLVLAAVFGQMDVSDASKVLMCSSTKAACKKEV 420

Query: 421 AK 422
           AK
Sbjct: 421 AK 422


>gi|169208948 PREDICTED: similar to COMM domain containing 4 [Homo
           sapiens]
          Length = 437

 Score =  847 bits (2189), Expect = 0.0
 Identities = 416/422 (98%), Positives = 417/422 (98%), Gaps = 1/422 (0%)

Query: 1   MRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPSLSRVGRRFRFCGDLDCPDRV 60
           MRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPSLSR+GRRFRFCGDLDCPDRV
Sbjct: 17  MRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPSLSRMGRRFRFCGDLDCPDRV 76

Query: 61  LAEISTLAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFI 120
           LAEISTLAKMSSVKLQLLCSQVLKELLGQGID K   KLTADAKFESGDVKATVAVLSFI
Sbjct: 77  LAEISTLAKMSSVKLQLLCSQVLKELLGQGIDVKD-QKLTADAKFESGDVKATVAVLSFI 135

Query: 121 LSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLRREYGSSPG 180
           LSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLRREYGSSPG
Sbjct: 136 LSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLRREYGSSPG 195

Query: 181 LELRDLRIRGHIWQGGPAWSAHGQGRYHVGSPRPDTTAPVSPLHFHPAHHLHYALSLMNP 240
           LELRDLRIRGHIWQGGPAWSAHGQGRYHVGSPRPDTTAPVSPLHFHPAHHLHYALSLMNP
Sbjct: 196 LELRDLRIRGHIWQGGPAWSAHGQGRYHVGSPRPDTTAPVSPLHFHPAHHLHYALSLMNP 255

Query: 241 SCQLLSAWLGSHADRSPLEHLEPKKLSLTFAIPGTRPLIMMKVDPNPLRGLKEQRLWRWP 300
           SCQLLSAWLGSHADRSPLEHLEPKKLSLTFAIPGTR LIMMKVDPNPLRGLKEQRLWRWP
Sbjct: 256 SCQLLSAWLGSHADRSPLEHLEPKKLSLTFAIPGTRSLIMMKVDPNPLRGLKEQRLWRWP 315

Query: 301 SSLVAIWLIHSSRWTLCPHVVQVPLCHLQTGHASPRASVPCYPAPTPRGRGTSGIGRRGL 360
           SSLVAIWLIHSSRWTLCPHVVQVPLCHLQTGHASPRASVPCYPAPTPRGRGTSGIGRRGL
Sbjct: 316 SSLVAIWLIHSSRWTLCPHVVQVPLCHLQTGHASPRASVPCYPAPTPRGRGTSGIGRRGL 375

Query: 361 CVPEVQRNLVPAAVNPYVMIFLPALFRVLVLAAVFGQMDVSDASKVLMCSSTKAACKKEV 420
           CVPEVQRNLVPAAVNPYVMIFLPALFRVLVLAAVFGQMDVSDASKVLMCSSTKAACKKEV
Sbjct: 376 CVPEVQRNLVPAAVNPYVMIFLPALFRVLVLAAVFGQMDVSDASKVLMCSSTKAACKKEV 435

Query: 421 AK 422
           AK
Sbjct: 436 AK 437


>gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens]
          Length = 456

 Score =  267 bits (682), Expect = 2e-71
 Identities = 176/329 (53%), Positives = 198/329 (60%), Gaps = 37/329 (11%)

Query: 3   GRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPS---LSRVGRRFRFCGDLDCPDR 59
           GR+  R++     T     +     RA   + ++  PS   +  V  RF FCGDLDCPD 
Sbjct: 109 GRRRRRRQHFAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDW 168

Query: 60  VLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF 119
           VLAEISTLAKMSSVKL+LLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF
Sbjct: 169 VLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF 228

Query: 120 ILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLRR------ 173
           +LSG AKHSVDG+SLASELQQLGLPKEHAAS C CYEEKQSPLQKHLRVCSLR       
Sbjct: 229 MLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRTWSLAAR 288

Query: 174 ---------EYGSSP---GLELRDLRI--RGHIWQ--------GGPAWSAHGQGRY--HV 209
                    +  ++P   G++     +   G  W+         G AWS      +  H 
Sbjct: 289 VAEGTAETVDPSAAPKTSGVQALACTVPHDGLGWRHPEEGGTHSGGAWSTKAPDCWGTHT 348

Query: 210 GSPRPDTTAPVSPLHFHPAHHLHYALSLMNPSCQLLSAWL----GSHADRSPLEHLEPKK 265
             P      P   L             L + + +LL   L     S A  S LEHLEPKK
Sbjct: 349 HGPLLSDCWPFPSLDTRALGRGVTIPGLSSQAERLLGTRLLLLGLSSAAGSTLEHLEPKK 408

Query: 266 LSLTFAIPGTRPLIMMKVDPNPLRGLKEQ 294
           L LTF IPGT  LIMMK D NPLR LKEQ
Sbjct: 409 LPLTFMIPGTHSLIMMKADQNPLRCLKEQ 437


>gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens]
          Length = 344

 Score =  232 bits (592), Expect = 4e-61
 Identities = 127/173 (73%), Positives = 138/173 (79%), Gaps = 3/173 (1%)

Query: 3   GRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPS---LSRVGRRFRFCGDLDCPDR 59
           GR+  R++     T     +     RA   + ++  PS   +  V  RF FCGDLDCPD 
Sbjct: 109 GRRRRRRQHFAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDW 168

Query: 60  VLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF 119
           VLAEISTLAKMSSVKL+LLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF
Sbjct: 169 VLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF 228

Query: 120 ILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLR 172
           +LSG AKHSVDG+SLASELQQLGLPKEHAAS C CYEEKQSPLQKHLRVCSLR
Sbjct: 229 MLSGTAKHSVDGESLASELQQLGLPKEHAASLCHCYEEKQSPLQKHLRVCSLR 281


>gi|239745242 PREDICTED: similar to COMM domain containing 4 [Homo
           sapiens]
          Length = 344

 Score =  232 bits (592), Expect = 4e-61
 Identities = 127/173 (73%), Positives = 138/173 (79%), Gaps = 3/173 (1%)

Query: 3   GRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPS---LSRVGRRFRFCGDLDCPDR 59
           GR+  R++     T     +     RA   + ++  PS   +  V  RF FCGDLDCPD 
Sbjct: 109 GRRRRRRQHFAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDW 168

Query: 60  VLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF 119
           VLAEISTLAKMSSVKL+LLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF
Sbjct: 169 VLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF 228

Query: 120 ILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLR 172
           +LSG AKHSVDG+SLASELQQLGLPKEHAAS C CYEEKQSPLQKHLRVCSLR
Sbjct: 229 MLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLR 281


>gi|21361661 COMM domain containing 4 [Homo sapiens]
          Length = 199

 Score =  231 bits (590), Expect = 7e-61
 Identities = 118/126 (93%), Positives = 122/126 (96%)

Query: 47  RFRFCGDLDCPDRVLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFE 106
           RFRFCGDLDCPD VLAEISTLAKMSSVKL+LLCSQVLKELLGQGIDY+KILKLTADAKFE
Sbjct: 2   RFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFE 61

Query: 107 SGDVKATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHL 166
           SGDVKATVAVLSFILS AAKHSVDG+SL+SELQQLGLPKEHAAS C CYEEKQSPLQKHL
Sbjct: 62  SGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL 121

Query: 167 RVCSLR 172
           RVCSLR
Sbjct: 122 RVCSLR 127


>gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens]
          Length = 1173

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 19/80 (23%), Positives = 35/80 (43%)

Query: 67   LAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFILSGAAK 126
            L +++ + LQL C++  K +      Y K L     +K     +K+T+A+  F L     
Sbjct: 1023 LDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKV 1082

Query: 127  HSVDGKSLASELQQLGLPKE 146
              +  K+  +E+     P E
Sbjct: 1083 EEIVAKNARAEIDYSDAPDE 1102


>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
          Length = 1302

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 19/80 (23%), Positives = 35/80 (43%)

Query: 67   LAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFILSGAAK 126
            L +++ + LQL C++  K +      Y K L     +K     +K+T+A+  F L     
Sbjct: 1152 LDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKV 1211

Query: 127  HSVDGKSLASELQQLGLPKE 146
              +  K+  +E+     P E
Sbjct: 1212 EEIVAKNARAEIDYSDAPDE 1231


>gi|161019170 mucin 5AC [Homo sapiens]
          Length = 6207

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 326 CHLQTGHASPRASVPCY---PAPTPRGRGTSGIGRRGLCV-PEVQRNLVPAAVNP 376
           C   TGHA   +S   Y   PA +P  RG SG+  RG  V P ++   V  A NP
Sbjct: 20  CTRHTGHAQDGSSESSYKHHPALSPIARGPSGVPLRGATVFPSLRTIPVVRASNP 74


>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
          Length = 2013

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 326 CHLQTGHASPRASVPCY---PAPTPRGRGTSGIGRRGLCV-PEVQRNLVPAAVNP 376
           C   TGHA   +S   Y   PA +P  RG SG+  RG  V P ++   V  A NP
Sbjct: 20  CTRHTGHAQDGSSESSYKHHPALSPIARGPSGVPLRGATVFPSLRTIPVVRASNP 74


>gi|171543895 ataxin 2 [Homo sapiens]
          Length = 1313

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 16/143 (11%)

Query: 210  GSPRPDTTAPVSPLHFHPAHHLHYALSLMNPSCQLLSAWLGSHADRSPLEHLEPKKL-SL 268
            GS       P + LH H  H    A     P+ Q  S   GSH   SP++H + +   +L
Sbjct: 1127 GSLAQQYAHPNATLHPHTPHPQPSA----TPTGQQQSQHGGSHPAPSPVQHHQHQAAQAL 1182

Query: 269  TFAIPGTRPLI----MMKVDPNPLRGLKEQRLWR-WPSSLVAIWLIHSSR----WTLCPH 319
              A P  +  I    +    P+       Q     +P++   ++ IH S     +T  PH
Sbjct: 1183 HLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPH 1242

Query: 320  VVQVPLCHLQTG--HASPRASVP 340
            +  VP  H+Q+G   + P A  P
Sbjct: 1243 MAHVPQAHVQSGMVPSHPTAHAP 1265


>gi|239756093 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 343

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 193 WQGGPAWSAHGQGRYHVGSPRPDTTAPVSP-LHFHPAHHL 231
           +Q  P W  HG   +  G+P        +P  HFHP+ HL
Sbjct: 212 FQDTPLWREHGHLSHGAGAPSSGQVVTRAPAYHFHPSAHL 251


>gi|239750624 PREDICTED: hypothetical protein XP_002347476 [Homo
           sapiens]
          Length = 343

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 193 WQGGPAWSAHGQGRYHVGSPRPDTTAPVSP-LHFHPAHHL 231
           +Q  P W  HG   +  G+P        +P  HFHP+ HL
Sbjct: 212 FQDTPLWREHGHLSHGAGAPSSGQVVTRAPAYHFHPSAHL 251


>gi|211904177 hypothetical protein LOC388336 [Homo sapiens]
          Length = 551

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 134 LASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLRREYGSSPGLE-LRDLRIRGHI 192
           + S+ Q L   + H+  P    E    P Q   R  S    + S+P L+  R  ++  H 
Sbjct: 440 ILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDVFVSTPVLDRYRMSKMHSHP 499

Query: 193 WQGGPAWSAHGQG-----RYHVGSPRPDTTAPVSPLHFHPAHHLHYALS 236
                +++  GQ      R+   S R +T   V  LH+ P HH  Y  S
Sbjct: 500 SASNNSYATLGQSQTAAKRHAFASRRHNT---VEQLHYIPGHHTCYTAS 545


>gi|7706663 COMM domain containing 10 [Homo sapiens]
          Length = 202

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 98  KLTADAKFESGDVKATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHA 148
           KL A    E  D+   +  +SFIL  A  H+V   +L  +L+ + L ++ A
Sbjct: 56  KLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKA 106


>gi|21361460 Kv channel interacting protein 2 isoform 1 [Homo
          sapiens]
          Length = 285

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 39 PSLSRVGRRFRFCGDLDCPDRVLAEIS 65
          PS+S +GR FRF GD   P  + A  S
Sbjct: 52 PSVSEIGRVFRFLGDSSLPSALAAPAS 78


>gi|22538453 phosphatidylinositol glycan anchor biosynthesis, class
           Q isoform 1 [Homo sapiens]
          Length = 760

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 288 LRGLKEQRLWRWPSSLVAIWLIHSSRWTLCPHVVQVPLC--HLQTGHASPRASVPCYPAP 345
           L  +  +++W WP+ L A+   H   W        +P C  H    H++PR    C P P
Sbjct: 613 LEVIGSEQMWGWPARLAALHHWHCLPWD------PLPTCCGHHGGEHSNPRCPEHC-PMP 665

Query: 346 T 346
           T
Sbjct: 666 T 666


>gi|59710104 plexin A3 [Homo sapiens]
          Length = 1871

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 325  LCHLQTGHASPRASVPCYPAPTPRGRGTSGI--GRRGLCVPEVQRNLVPAA 373
            L H+QT  +  R+S   YP P+    G SG+   + G  V    +NL+PAA
Sbjct: 1105 LDHVQTARSLNRSSFTYYPDPSFEPLGPSGVLDVKPGSHVVLKGKNLIPAA 1155


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,380,715
Number of Sequences: 37866
Number of extensions: 947807
Number of successful extensions: 2486
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2473
Number of HSP's gapped (non-prelim): 21
length of query: 422
length of database: 18,247,518
effective HSP length: 105
effective length of query: 317
effective length of database: 14,271,588
effective search space: 4524093396
effective search space used: 4524093396
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.