Guide to the Human Genome
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Search of human proteins with 169206129

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169206129 PREDICTED: similar to hCG1643984 [Homo sapiens]
         (111 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169206129 PREDICTED: similar to hCG1643984 [Homo sapiens]          229   3e-61
gi|169206468 PREDICTED: similar to hCG1643984 [Homo sapiens]          229   3e-61
gi|169205922 PREDICTED: similar to hCG1643984 [Homo sapiens]          229   3e-61
gi|10800132 histone cluster 1, H2ag [Homo sapiens]                    119   7e-28
gi|4504239 histone cluster 1, H2ai [Homo sapiens]                     119   7e-28
gi|4504241 histone cluster 1, H2ak [Homo sapiens]                     119   7e-28
gi|4504249 histone cluster 1, H2am [Homo sapiens]                     119   7e-28
gi|4504243 histone cluster 1, H2al [Homo sapiens]                     119   7e-28
gi|10800130 histone cluster 1, H2ad [Homo sapiens]                    119   7e-28
gi|18105045 histone cluster 1, H2ah [Homo sapiens]                    117   2e-27
gi|19557656 histone cluster 1, H2ab [Homo sapiens]                    117   2e-27
gi|10645195 histone cluster 1, H2ae [Homo sapiens]                    117   2e-27
gi|10800144 histone cluster 1, H2aj [Homo sapiens]                    117   2e-27
gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]                  117   2e-27
gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]                    117   2e-27
gi|4504245 histone cluster 1, H2ac [Homo sapiens]                     116   4e-27
gi|15617199 histone cluster 3, H2a [Homo sapiens]                     116   4e-27
gi|24638446 histone cluster 2, H2ac [Homo sapiens]                    114   1e-26
gi|28195394 histone cluster 2, H2ab [Homo sapiens]                    112   6e-26
gi|29553970 H2A histone family, member J [Homo sapiens]               110   3e-25
gi|25092737 histone cluster 1, H2aa [Homo sapiens]                    109   4e-25
gi|4504253 H2A histone family, member X [Homo sapiens]                100   3e-22
gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]       55   9e-09
gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]      55   9e-09
gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]      55   9e-09
gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]      55   9e-09
gi|8923920 H2A histone family, member Y2 [Homo sapiens]                53   5e-08
gi|4504255 H2A histone family, member Z [Homo sapiens]                 44   4e-05
gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]       42   1e-04
gi|41406071 H2A histone family, member V isoform 5 [Homo sapiens]      39   0.001

>gi|169206129 PREDICTED: similar to hCG1643984 [Homo sapiens]
          Length = 111

 Score =  229 bits (585), Expect = 3e-61
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI 60
           MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI
Sbjct: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI 60

Query: 61  ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK 111
           ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK
Sbjct: 61  ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK 111


>gi|169206468 PREDICTED: similar to hCG1643984 [Homo sapiens]
          Length = 111

 Score =  229 bits (585), Expect = 3e-61
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI 60
           MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI
Sbjct: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI 60

Query: 61  ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK 111
           ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK
Sbjct: 61  ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK 111


>gi|169205922 PREDICTED: similar to hCG1643984 [Homo sapiens]
          Length = 111

 Score =  229 bits (585), Expect = 3e-61
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI 60
           MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI
Sbjct: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI 60

Query: 61  ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK 111
           ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK
Sbjct: 61  ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK 111


>gi|10800132 histone cluster 1, H2ag [Homo sapiens]
          Length = 130

 Score =  119 bits (297), Expect = 7e-28
 Identities = 73/130 (56%), Positives = 80/130 (61%), Gaps = 19/130 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AKT+ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH K K K
Sbjct: 121 TESHHKAKGK 130


>gi|4504239 histone cluster 1, H2ai [Homo sapiens]
          Length = 130

 Score =  119 bits (297), Expect = 7e-28
 Identities = 73/130 (56%), Positives = 80/130 (61%), Gaps = 19/130 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AKT+ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH K K K
Sbjct: 121 TESHHKAKGK 130


>gi|4504241 histone cluster 1, H2ak [Homo sapiens]
          Length = 130

 Score =  119 bits (297), Expect = 7e-28
 Identities = 73/130 (56%), Positives = 80/130 (61%), Gaps = 19/130 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AKT+ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH K K K
Sbjct: 121 TESHHKAKGK 130


>gi|4504249 histone cluster 1, H2am [Homo sapiens]
          Length = 130

 Score =  119 bits (297), Expect = 7e-28
 Identities = 73/130 (56%), Positives = 80/130 (61%), Gaps = 19/130 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AKT+ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH K K K
Sbjct: 121 TESHHKAKGK 130


>gi|4504243 histone cluster 1, H2al [Homo sapiens]
          Length = 130

 Score =  119 bits (297), Expect = 7e-28
 Identities = 73/130 (56%), Positives = 80/130 (61%), Gaps = 19/130 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AKT+ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH K K K
Sbjct: 121 TESHHKAKGK 130


>gi|10800130 histone cluster 1, H2ad [Homo sapiens]
          Length = 130

 Score =  119 bits (297), Expect = 7e-28
 Identities = 73/130 (56%), Positives = 80/130 (61%), Gaps = 19/130 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AKT+ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH K K K
Sbjct: 121 TESHHKAKGK 130


>gi|18105045 histone cluster 1, H2ah [Homo sapiens]
          Length = 128

 Score =  117 bits (294), Expect = 2e-27
 Identities = 72/128 (56%), Positives = 79/128 (61%), Gaps = 19/128 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AKT+ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVK 109
           TESH K K
Sbjct: 121 TESHHKAK 128


>gi|19557656 histone cluster 1, H2ab [Homo sapiens]
          Length = 130

 Score =  117 bits (294), Expect = 2e-27
 Identities = 72/130 (55%), Positives = 80/130 (61%), Gaps = 19/130 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AKT+ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLG+V I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH K K K
Sbjct: 121 TESHHKAKGK 130


>gi|10645195 histone cluster 1, H2ae [Homo sapiens]
          Length = 130

 Score =  117 bits (294), Expect = 2e-27
 Identities = 72/130 (55%), Positives = 80/130 (61%), Gaps = 19/130 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AKT+ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLG+V I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH K K K
Sbjct: 121 TESHHKAKGK 130


>gi|10800144 histone cluster 1, H2aj [Homo sapiens]
          Length = 128

 Score =  117 bits (294), Expect = 2e-27
 Identities = 72/128 (56%), Positives = 79/128 (61%), Gaps = 19/128 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AKT+ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVK 109
           TESH K K
Sbjct: 121 TESHHKTK 128


>gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]
          Length = 130

 Score =  117 bits (293), Expect = 2e-27
 Identities = 72/130 (55%), Positives = 80/130 (61%), Gaps = 19/130 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AK++ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH K K K
Sbjct: 121 TESHHKAKGK 130


>gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]
          Length = 130

 Score =  117 bits (293), Expect = 2e-27
 Identities = 72/130 (55%), Positives = 80/130 (61%), Gaps = 19/130 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AK++ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH K K K
Sbjct: 121 TESHHKAKGK 130


>gi|4504245 histone cluster 1, H2ac [Homo sapiens]
          Length = 130

 Score =  116 bits (290), Expect = 4e-27
 Identities = 71/130 (54%), Positives = 80/130 (61%), Gaps = 19/130 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AK++ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLG+V I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH K K K
Sbjct: 121 TESHHKAKGK 130


>gi|15617199 histone cluster 3, H2a [Homo sapiens]
          Length = 130

 Score =  116 bits (290), Expect = 4e-27
 Identities = 71/130 (54%), Positives = 80/130 (61%), Gaps = 19/130 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AK++ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLG+V I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH K K K
Sbjct: 121 TESHHKAKGK 130


>gi|24638446 histone cluster 2, H2ac [Homo sapiens]
          Length = 129

 Score =  114 bits (286), Expect = 1e-26
 Identities = 72/130 (55%), Positives = 80/130 (61%), Gaps = 20/130 (15%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AK++ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH K K K
Sbjct: 121 TESH-KAKSK 129


>gi|28195394 histone cluster 2, H2ab [Homo sapiens]
          Length = 130

 Score =  112 bits (280), Expect = 6e-26
 Identities = 70/130 (53%), Positives = 78/130 (60%), Gaps = 19/130 (14%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  KA  +AK++ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLG V I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TESH   K K
Sbjct: 121 TESHKPGKNK 130


>gi|29553970 H2A histone family, member J [Homo sapiens]
          Length = 129

 Score =  110 bits (274), Expect = 3e-25
 Identities = 70/130 (53%), Positives = 78/130 (60%), Gaps = 20/130 (15%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GKQ  K   +AK++ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESHLKVKEK 111
           TES  K K K
Sbjct: 121 TESQ-KTKSK 129


>gi|25092737 histone cluster 1, H2aa [Homo sapiens]
          Length = 131

 Score =  109 bits (273), Expect = 4e-25
 Identities = 66/124 (53%), Positives = 77/124 (62%), Gaps = 19/124 (15%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKI---------------- 44
           MSG GKQ  KA  ++K++ S   LQF  G +H LL KGNY E+I                
Sbjct: 1   MSGRGKQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLT 60

Query: 45  ---LELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
              LELAGN + DNKKT II  HLQLA  N+E++NKLLG V I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TESH 105
           TESH
Sbjct: 121 TESH 124


>gi|4504253 H2A histone family, member X [Homo sapiens]
          Length = 143

 Score =  100 bits (249), Expect = 3e-22
 Identities = 63/123 (51%), Positives = 73/123 (59%), Gaps = 19/123 (15%)

Query: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
           MSG GK   KA  +AK++ S   LQF  G VH LL KG+Y E+                 
Sbjct: 1   MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT 60

Query: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLG V I Q  VLPNIQA +LPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120

Query: 102 TES 104
           T +
Sbjct: 121 TSA 123


>gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]
          Length = 371

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 31/67 (46%), Positives = 42/67 (62%)

Query: 43  KILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKT 102
           +ILELAGN   DNKK  +   H+ LA  N+E++N+LL  V I    VLPNI  ++L KK 
Sbjct: 59  EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118

Query: 103 ESHLKVK 109
            S  K++
Sbjct: 119 GSKGKLE 125


>gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]
          Length = 371

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 31/67 (46%), Positives = 42/67 (62%)

Query: 43  KILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKT 102
           +ILELAGN   DNKK  +   H+ LA  N+E++N+LL  V I    VLPNI  ++L KK 
Sbjct: 59  EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118

Query: 103 ESHLKVK 109
            S  K++
Sbjct: 119 GSKGKLE 125


>gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]
          Length = 372

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 31/67 (46%), Positives = 42/67 (62%)

Query: 43  KILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKT 102
           +ILELAGN   DNKK  +   H+ LA  N+E++N+LL  V I    VLPNI  ++L KK 
Sbjct: 59  EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118

Query: 103 ESHLKVK 109
            S  K++
Sbjct: 119 GSKGKLE 125


>gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]
          Length = 369

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 31/67 (46%), Positives = 42/67 (62%)

Query: 43  KILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKT 102
           +ILELAGN   DNKK  +   H+ LA  N+E++N+LL  V I    VLPNI  ++L KK 
Sbjct: 59  EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118

Query: 103 ESHLKVK 109
            S  K++
Sbjct: 119 GSKGKLE 125


>gi|8923920 H2A histone family, member Y2 [Homo sapiens]
          Length = 372

 Score = 53.1 bits (126), Expect = 5e-08
 Identities = 29/59 (49%), Positives = 37/59 (62%)

Query: 43  KILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
           +ILELAGN   DNKK  I   H+ LA  N+E++N+LL  V I    VLP I  ++L KK
Sbjct: 59  EILELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKK 117


>gi|4504255 H2A histone family, member Z [Homo sapiens]
          Length = 128

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 21/117 (17%)

Query: 5   GKQSSKACTEAKTQPSWVSLQFLTGCVHLLL----------------FKGNYYE----KI 44
           GK S KA T+A ++     LQF  G +H  L                +     E    ++
Sbjct: 7   GKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEV 66

Query: 45  LELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
           LELAGN + D K   I   HLQLA   +E+++ L+ K  I    V+P+I   ++ KK
Sbjct: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122


>gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]
          Length = 128

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 21/117 (17%)

Query: 5   GKQSSKACTEAKTQPSWVSLQFLTGCVHLLL----------------FKGNYYE----KI 44
           GK S KA  +A ++     LQF  G +H  L                +     E    ++
Sbjct: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66

Query: 45  LELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
           LELAGN + D K   I   HLQLA   +E+++ L+ K  I    V+P+I   ++ KK
Sbjct: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122


>gi|41406071 H2A histone family, member V isoform 5 [Homo sapiens]
          Length = 90

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 19/97 (19%)

Query: 5   GKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCIILHH 64
           GK S KA  +A ++     LQ                  +LELAGN + D K   I   H
Sbjct: 7   GKDSGKAKAKAVSRSQRAGLQ------------------VLELAGNASKDLKVKRITPRH 48

Query: 65  LQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
           LQLA   +E+++ L+ K  I    V+P+I   ++ KK
Sbjct: 49  LQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,220,502
Number of Sequences: 37866
Number of extensions: 160674
Number of successful extensions: 431
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 47
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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