Guide to the Human Genome
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Name: H2AFJ Sequence: fasta or formatted (129aa) NCBI GI: 29553970
Description:

H2A histone family, member J

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         15           2
 C cysteine            0.0          0           0
 D aspartate           1.6          2           1
 E glutamate           5.4          7           2
 F phenylalanine       0.8          1           1
 G glycine            10.1         13           2
 H histidine           1.6          2           1
 I isoleucine          4.7          6           2
 K lysine             10.9         14           2
 L leucine            12.4         16           2
 M methionine          0.8          1           1
 N asparagine          4.7          6           1
 P proline             3.9          5           1
 Q glutamine           4.7          6           1
 R arginine            9.3         12           1
 S serine              4.7          6           2
 T threonine           3.9          5           1
 V valine              7.0          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   H2A histone family, member J 
HIST2H2AC             0.973   histone cluster 2, H2ac 
HIST2H2AA4            0.946   histone cluster 2, H2aa4 
HIST2H2AA3            0.946   histone cluster 2, H2aa3 
HIST1H2AG             0.946   histone cluster 1, H2ag 
HIST1H2AI             0.946   histone cluster 1, H2ai 
HIST1H2AK             0.946   histone cluster 1, H2ak 
HIST1H2AC             0.946   histone cluster 1, H2ac 
HIST1H2AM             0.946   histone cluster 1, H2am 
HIST1H2AL             0.946   histone cluster 1, H2al 
HIST1H2AJ             0.946   histone cluster 1, H2aj 
HIST1H2AH             0.942   histone cluster 1, H2ah 
HIST2H2AB             0.942   histone cluster 2, H2ab 
HIST3H2A              0.942   histone cluster 3, H2a 
HIST1H2AD             0.942   histone cluster 1, H2ad 
HIST1H2AB             0.933   histone cluster 1, H2ab 
HIST1H2AE             0.933   histone cluster 1, H2ae 
HIST1H2AA             0.929   histone cluster 1, H2aa 
H2AFX                 0.902   H2A histone family, member X 
H2AFY                 0.558   H2A histone family, member Y isoform 2 
H2AFY                 0.558   H2A histone family, member Y isoform 2 
H2AFY                 0.558   H2A histone family, member Y isoform 3 
H2AFY                 0.558   H2A histone family, member Y isoform 1 
H2AFY2                0.545   H2A histone family, member Y2 
H2AFV                 0.509   H2A histone family, member V isoform 1 
H2AFZ                 0.504   H2A histone family, member Z 
H2AFV                 0.442   H2A histone family, member V isoform 2 
H2AFV                 0.384   H2A histone family, member V isoform 3 
LOC651868             0.379   PREDICTED: similar to hCG1643984 
LOC651868             0.379   PREDICTED: similar to hCG1643984 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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