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Search of human proteins with 169205922
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169205922 PREDICTED: similar to hCG1643984 [Homo sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169206129 PREDICTED: similar to hCG1643984 [Homo sapiens] 229 3e-61
gi|169206468 PREDICTED: similar to hCG1643984 [Homo sapiens] 229 3e-61
gi|169205922 PREDICTED: similar to hCG1643984 [Homo sapiens] 229 3e-61
gi|10800132 histone cluster 1, H2ag [Homo sapiens] 119 7e-28
gi|4504239 histone cluster 1, H2ai [Homo sapiens] 119 7e-28
gi|4504241 histone cluster 1, H2ak [Homo sapiens] 119 7e-28
gi|4504249 histone cluster 1, H2am [Homo sapiens] 119 7e-28
gi|4504243 histone cluster 1, H2al [Homo sapiens] 119 7e-28
gi|10800130 histone cluster 1, H2ad [Homo sapiens] 119 7e-28
gi|18105045 histone cluster 1, H2ah [Homo sapiens] 117 2e-27
gi|19557656 histone cluster 1, H2ab [Homo sapiens] 117 2e-27
gi|10645195 histone cluster 1, H2ae [Homo sapiens] 117 2e-27
gi|10800144 histone cluster 1, H2aj [Homo sapiens] 117 2e-27
gi|106775678 histone cluster 2, H2aa4 [Homo sapiens] 117 2e-27
gi|4504251 histone cluster 2, H2aa3 [Homo sapiens] 117 2e-27
gi|4504245 histone cluster 1, H2ac [Homo sapiens] 116 4e-27
gi|15617199 histone cluster 3, H2a [Homo sapiens] 116 4e-27
gi|24638446 histone cluster 2, H2ac [Homo sapiens] 114 1e-26
gi|28195394 histone cluster 2, H2ab [Homo sapiens] 112 6e-26
gi|29553970 H2A histone family, member J [Homo sapiens] 110 3e-25
gi|25092737 histone cluster 1, H2aa [Homo sapiens] 109 4e-25
gi|4504253 H2A histone family, member X [Homo sapiens] 100 3e-22
gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens] 55 9e-09
gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens] 55 9e-09
gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens] 55 9e-09
gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens] 55 9e-09
gi|8923920 H2A histone family, member Y2 [Homo sapiens] 53 5e-08
gi|4504255 H2A histone family, member Z [Homo sapiens] 44 4e-05
gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens] 42 1e-04
gi|41406071 H2A histone family, member V isoform 5 [Homo sapiens] 39 0.001
>gi|169206129 PREDICTED: similar to hCG1643984 [Homo sapiens]
Length = 111
Score = 229 bits (585), Expect = 3e-61
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI 60
MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI
Sbjct: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI 60
Query: 61 ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK 111
ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK
Sbjct: 61 ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK 111
>gi|169206468 PREDICTED: similar to hCG1643984 [Homo sapiens]
Length = 111
Score = 229 bits (585), Expect = 3e-61
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI 60
MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI
Sbjct: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI 60
Query: 61 ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK 111
ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK
Sbjct: 61 ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK 111
>gi|169205922 PREDICTED: similar to hCG1643984 [Homo sapiens]
Length = 111
Score = 229 bits (585), Expect = 3e-61
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI 60
MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI
Sbjct: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCI 60
Query: 61 ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK 111
ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK
Sbjct: 61 ILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKTESHLKVKEK 111
>gi|10800132 histone cluster 1, H2ag [Homo sapiens]
Length = 130
Score = 119 bits (297), Expect = 7e-28
Identities = 73/130 (56%), Positives = 80/130 (61%), Gaps = 19/130 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AKT+ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLGKV I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K K
Sbjct: 121 TESHHKAKGK 130
>gi|4504239 histone cluster 1, H2ai [Homo sapiens]
Length = 130
Score = 119 bits (297), Expect = 7e-28
Identities = 73/130 (56%), Positives = 80/130 (61%), Gaps = 19/130 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AKT+ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLGKV I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K K
Sbjct: 121 TESHHKAKGK 130
>gi|4504241 histone cluster 1, H2ak [Homo sapiens]
Length = 130
Score = 119 bits (297), Expect = 7e-28
Identities = 73/130 (56%), Positives = 80/130 (61%), Gaps = 19/130 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AKT+ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLGKV I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K K
Sbjct: 121 TESHHKAKGK 130
>gi|4504249 histone cluster 1, H2am [Homo sapiens]
Length = 130
Score = 119 bits (297), Expect = 7e-28
Identities = 73/130 (56%), Positives = 80/130 (61%), Gaps = 19/130 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AKT+ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLGKV I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K K
Sbjct: 121 TESHHKAKGK 130
>gi|4504243 histone cluster 1, H2al [Homo sapiens]
Length = 130
Score = 119 bits (297), Expect = 7e-28
Identities = 73/130 (56%), Positives = 80/130 (61%), Gaps = 19/130 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AKT+ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLGKV I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K K
Sbjct: 121 TESHHKAKGK 130
>gi|10800130 histone cluster 1, H2ad [Homo sapiens]
Length = 130
Score = 119 bits (297), Expect = 7e-28
Identities = 73/130 (56%), Positives = 80/130 (61%), Gaps = 19/130 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AKT+ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLGKV I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K K
Sbjct: 121 TESHHKAKGK 130
>gi|18105045 histone cluster 1, H2ah [Homo sapiens]
Length = 128
Score = 117 bits (294), Expect = 2e-27
Identities = 72/128 (56%), Positives = 79/128 (61%), Gaps = 19/128 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AKT+ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLGKV I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVK 109
TESH K K
Sbjct: 121 TESHHKAK 128
>gi|19557656 histone cluster 1, H2ab [Homo sapiens]
Length = 130
Score = 117 bits (294), Expect = 2e-27
Identities = 72/130 (55%), Positives = 80/130 (61%), Gaps = 19/130 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AKT+ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLG+V I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K K
Sbjct: 121 TESHHKAKGK 130
>gi|10645195 histone cluster 1, H2ae [Homo sapiens]
Length = 130
Score = 117 bits (294), Expect = 2e-27
Identities = 72/130 (55%), Positives = 80/130 (61%), Gaps = 19/130 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AKT+ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLG+V I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K K
Sbjct: 121 TESHHKAKGK 130
>gi|10800144 histone cluster 1, H2aj [Homo sapiens]
Length = 128
Score = 117 bits (294), Expect = 2e-27
Identities = 72/128 (56%), Positives = 79/128 (61%), Gaps = 19/128 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AKT+ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLGKV I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVK 109
TESH K K
Sbjct: 121 TESHHKTK 128
>gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]
Length = 130
Score = 117 bits (293), Expect = 2e-27
Identities = 72/130 (55%), Positives = 80/130 (61%), Gaps = 19/130 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AK++ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLGKV I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K K
Sbjct: 121 TESHHKAKGK 130
>gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]
Length = 130
Score = 117 bits (293), Expect = 2e-27
Identities = 72/130 (55%), Positives = 80/130 (61%), Gaps = 19/130 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AK++ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLGKV I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K K
Sbjct: 121 TESHHKAKGK 130
>gi|4504245 histone cluster 1, H2ac [Homo sapiens]
Length = 130
Score = 116 bits (290), Expect = 4e-27
Identities = 71/130 (54%), Positives = 80/130 (61%), Gaps = 19/130 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AK++ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLG+V I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K K
Sbjct: 121 TESHHKAKGK 130
>gi|15617199 histone cluster 3, H2a [Homo sapiens]
Length = 130
Score = 116 bits (290), Expect = 4e-27
Identities = 71/130 (54%), Positives = 80/130 (61%), Gaps = 19/130 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AK++ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLG+V I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K K
Sbjct: 121 TESHHKAKGK 130
>gi|24638446 histone cluster 2, H2ac [Homo sapiens]
Length = 129
Score = 114 bits (286), Expect = 1e-26
Identities = 72/130 (55%), Positives = 80/130 (61%), Gaps = 20/130 (15%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AK++ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLGKV I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K K
Sbjct: 121 TESH-KAKSK 129
>gi|28195394 histone cluster 2, H2ab [Homo sapiens]
Length = 130
Score = 112 bits (280), Expect = 6e-26
Identities = 70/130 (53%), Positives = 78/130 (60%), Gaps = 19/130 (14%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ KA +AK++ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLG V I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TESH K K
Sbjct: 121 TESHKPGKNK 130
>gi|29553970 H2A histone family, member J [Homo sapiens]
Length = 129
Score = 110 bits (274), Expect = 3e-25
Identities = 70/130 (53%), Positives = 78/130 (60%), Gaps = 20/130 (15%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GKQ K +AK++ S LQF G VH LL KGNY E+
Sbjct: 1 MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLGKV I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESHLKVKEK 111
TES K K K
Sbjct: 121 TESQ-KTKSK 129
>gi|25092737 histone cluster 1, H2aa [Homo sapiens]
Length = 131
Score = 109 bits (273), Expect = 4e-25
Identities = 66/124 (53%), Positives = 77/124 (62%), Gaps = 19/124 (15%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKI---------------- 44
MSG GKQ KA ++K++ S LQF G +H LL KGNY E+I
Sbjct: 1 MSGRGKQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLT 60
Query: 45 ---LELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
LELAGN + DNKKT II HLQLA N+E++NKLLG V I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TESH 105
TESH
Sbjct: 121 TESH 124
>gi|4504253 H2A histone family, member X [Homo sapiens]
Length = 143
Score = 100 bits (249), Expect = 3e-22
Identities = 63/123 (51%), Positives = 73/123 (59%), Gaps = 19/123 (15%)
Query: 1 MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43
MSG GK KA +AK++ S LQF G VH LL KG+Y E+
Sbjct: 1 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT 60
Query: 44 --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
ILELAGN DNKKT II HLQLA N+E++NKLLG V I Q VLPNIQA +LPKK
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
Query: 102 TES 104
T +
Sbjct: 121 TSA 123
>gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]
Length = 371
Score = 55.5 bits (132), Expect = 9e-09
Identities = 31/67 (46%), Positives = 42/67 (62%)
Query: 43 KILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKT 102
+ILELAGN DNKK + H+ LA N+E++N+LL V I VLPNI ++L KK
Sbjct: 59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118
Query: 103 ESHLKVK 109
S K++
Sbjct: 119 GSKGKLE 125
>gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]
Length = 371
Score = 55.5 bits (132), Expect = 9e-09
Identities = 31/67 (46%), Positives = 42/67 (62%)
Query: 43 KILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKT 102
+ILELAGN DNKK + H+ LA N+E++N+LL V I VLPNI ++L KK
Sbjct: 59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118
Query: 103 ESHLKVK 109
S K++
Sbjct: 119 GSKGKLE 125
>gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]
Length = 372
Score = 55.5 bits (132), Expect = 9e-09
Identities = 31/67 (46%), Positives = 42/67 (62%)
Query: 43 KILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKT 102
+ILELAGN DNKK + H+ LA N+E++N+LL V I VLPNI ++L KK
Sbjct: 59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118
Query: 103 ESHLKVK 109
S K++
Sbjct: 119 GSKGKLE 125
>gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]
Length = 369
Score = 55.5 bits (132), Expect = 9e-09
Identities = 31/67 (46%), Positives = 42/67 (62%)
Query: 43 KILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKKT 102
+ILELAGN DNKK + H+ LA N+E++N+LL V I VLPNI ++L KK
Sbjct: 59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118
Query: 103 ESHLKVK 109
S K++
Sbjct: 119 GSKGKLE 125
>gi|8923920 H2A histone family, member Y2 [Homo sapiens]
Length = 372
Score = 53.1 bits (126), Expect = 5e-08
Identities = 29/59 (49%), Positives = 37/59 (62%)
Query: 43 KILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
+ILELAGN DNKK I H+ LA N+E++N+LL V I VLP I ++L KK
Sbjct: 59 EILELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKK 117
>gi|4504255 H2A histone family, member Z [Homo sapiens]
Length = 128
Score = 43.5 bits (101), Expect = 4e-05
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 21/117 (17%)
Query: 5 GKQSSKACTEAKTQPSWVSLQFLTGCVHLLL----------------FKGNYYE----KI 44
GK S KA T+A ++ LQF G +H L + E ++
Sbjct: 7 GKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEV 66
Query: 45 LELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
LELAGN + D K I HLQLA +E+++ L+ K I V+P+I ++ KK
Sbjct: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
>gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]
Length = 128
Score = 41.6 bits (96), Expect = 1e-04
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 21/117 (17%)
Query: 5 GKQSSKACTEAKTQPSWVSLQFLTGCVHLLL----------------FKGNYYE----KI 44
GK S KA +A ++ LQF G +H L + E ++
Sbjct: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
Query: 45 LELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
LELAGN + D K I HLQLA +E+++ L+ K I V+P+I ++ KK
Sbjct: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
>gi|41406071 H2A histone family, member V isoform 5 [Homo sapiens]
Length = 90
Score = 38.5 bits (88), Expect = 0.001
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 19/97 (19%)
Query: 5 GKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEKILELAGNGTCDNKKTCIILHH 64
GK S KA +A ++ LQ +LELAGN + D K I H
Sbjct: 7 GKDSGKAKAKAVSRSQRAGLQ------------------VLELAGNASKDLKVKRITPRH 48
Query: 65 LQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101
LQLA +E+++ L+ K I V+P+I ++ KK
Sbjct: 49 LQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,220,502
Number of Sequences: 37866
Number of extensions: 160674
Number of successful extensions: 431
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 47
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.