Search of human proteins with 169203577

Search of human proteins with 169203577

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169203577 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
         (75 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169203121 PREDICTED: similar to small nuclear ribonucleoprote...   152   7e-38
gi|169203577 PREDICTED: similar to small nuclear ribonucleoprote...   152   7e-38
gi|169202369 PREDICTED: similar to small nuclear ribonucleoprote...   152   7e-38
gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo s...   101   1e-22
gi|226442852 small nuclear ribonucleoprotein G-like protein [Hom...    96   6e-21
gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like p...    96   6e-21
gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like p...    96   6e-21
gi|169194552 PREDICTED: similar to small nuclear ribonucleoprote...    82   9e-17
gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens]     33   0.038
gi|145199237 transcription elongation factor B polypeptide 3 bin...    28   1.6  
gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform...    27   3.6  
gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]     27   4.6  
gi|66571327 ring finger protein 213 [Homo sapiens]                     27   4.6  
gi|213385305 LSM5 homolog, U6 small nuclear RNA associated isofo...    26   7.9  
gi|195222722 LSM5 homolog, U6 small nuclear RNA associated isofo...    26   7.9  

>gi|169203121 PREDICTED: similar to small nuclear
          ribonucleoprotein polypeptide G [Homo sapiens]
          Length = 75

 Score =  152 bits (383), Expect = 7e-38
 Identities = 75/75 (100%), Positives = 75/75 (100%)

Query: 1  MNKAHSLKLKKLMDKLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVE 60
          MNKAHSLKLKKLMDKLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVE
Sbjct: 1  MNKAHSLKLKKLMDKLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVE 60

Query: 61 IGGNSIITLKALEQV 75
          IGGNSIITLKALEQV
Sbjct: 61 IGGNSIITLKALEQV 75


>gi|169203577 PREDICTED: similar to small nuclear
          ribonucleoprotein polypeptide G [Homo sapiens]
          Length = 75

 Score =  152 bits (383), Expect = 7e-38
 Identities = 75/75 (100%), Positives = 75/75 (100%)

Query: 1  MNKAHSLKLKKLMDKLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVE 60
          MNKAHSLKLKKLMDKLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVE
Sbjct: 1  MNKAHSLKLKKLMDKLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVE 60

Query: 61 IGGNSIITLKALEQV 75
          IGGNSIITLKALEQV
Sbjct: 61 IGGNSIITLKALEQV 75


>gi|169202369 PREDICTED: similar to small nuclear
          ribonucleoprotein polypeptide G [Homo sapiens]
          Length = 75

 Score =  152 bits (383), Expect = 7e-38
 Identities = 75/75 (100%), Positives = 75/75 (100%)

Query: 1  MNKAHSLKLKKLMDKLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVE 60
          MNKAHSLKLKKLMDKLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVE
Sbjct: 1  MNKAHSLKLKKLMDKLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVE 60

Query: 61 IGGNSIITLKALEQV 75
          IGGNSIITLKALEQV
Sbjct: 61 IGGNSIITLKALEQV 75


>gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo
          sapiens]
          Length = 76

 Score =  101 bits (251), Expect = 1e-22
 Identities = 56/76 (73%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 1  MNKAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTV 59
          M+KAH  +LKK MDK LSLKLNGGR VQGIL GF  FMNL+IDECV+MA SGQQNNI  V
Sbjct: 1  MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60

Query: 60 EIGGNSIITLKALEQV 75
           I GNSII L+ALE+V
Sbjct: 61 VIRGNSIIMLEALERV 76


>gi|226442852 small nuclear ribonucleoprotein G-like protein [Homo
          sapiens]
          Length = 74

 Score = 95.9 bits (237), Expect = 6e-21
 Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 1/74 (1%)

Query: 1  MNKAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTV 59
          M+KAH  +LKK  DK  SLKLNGGR VQGIL GF  FMNL+IDECV+MA SGQQ NI  V
Sbjct: 1  MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60

Query: 60 EIGGNSIITLKALE 73
          EI GNSII L+ALE
Sbjct: 61 EIRGNSIIMLEALE 74


>gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like
          protein [Homo sapiens]
          Length = 74

 Score = 95.9 bits (237), Expect = 6e-21
 Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 1/74 (1%)

Query: 1  MNKAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTV 59
          M+KAH  +LKK  DK  SLKLNGGR VQGIL GF  FMNL+IDECV+MA SGQQ NI  V
Sbjct: 1  MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60

Query: 60 EIGGNSIITLKALE 73
          EI GNSII L+ALE
Sbjct: 61 EIRGNSIIMLEALE 74


>gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like
          protein [Homo sapiens]
          Length = 74

 Score = 95.9 bits (237), Expect = 6e-21
 Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 1/74 (1%)

Query: 1  MNKAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTV 59
          M+KAH  +LKK  DK  SLKLNGGR VQGIL GF  FMNL+IDECV+MA SGQQ NI  V
Sbjct: 1  MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60

Query: 60 EIGGNSIITLKALE 73
          EI GNSII L+ALE
Sbjct: 61 EIRGNSIIMLEALE 74


>gi|169194552 PREDICTED: similar to small nuclear
          ribonucleoprotein polypeptide G [Homo sapiens]
          Length = 62

 Score = 82.0 bits (201), Expect = 9e-17
 Identities = 43/59 (72%), Positives = 47/59 (79%)

Query: 15 KLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVEIGGNSIITLKALE 73
          KLSLKLNGGR VQGIL G   FMNL+IDECV+MA SGQQNN   V I GNSI+ L+ALE
Sbjct: 4  KLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILMLEALE 62


>gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo
          sapiens]
          Length = 103

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 3  KAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVK 46
          K   L L K +DK + +K  GGR   GIL GF   +NL++D  ++
Sbjct: 9  KESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIE 53


>gi|145199237 transcription elongation factor B polypeptide 3
           binding protein 1 [Homo sapiens]
          Length = 1221

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 4   AHSLKLKKLMDKLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQ 53
           AHS  L+ L   +  K  GG+    I      ++NL I+EC+K   S Q+
Sbjct: 792 AHSPSLQSLKKPIIPKEFGGKVPTVIR---QRYLNLFIEECLKFCTSNQE 838


>gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform
          a [Homo sapiens]
          Length = 91

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 10 KKLMDKLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVE---IGGNSI 66
          K +  ++ + +   + + G L GF  F+N+++++  +  I+ +   I  ++   + GN+I
Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 79

Query: 67 ITL 69
            L
Sbjct: 80 TML 82


>gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo
          sapiens]
          Length = 96

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 23 GRCVQGILWGFSHFMNLMIDECVKMAISGQQ 53
          GR + G L GF   +NL++DE  +   S  Q
Sbjct: 20 GRMIVGTLKGFDQTINLILDESHERVFSSSQ 50


>gi|66571327 ring finger protein 213 [Homo sapiens]
          Length = 3280

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 9   LKKLMDKLSLKLNGGRCVQGILWGFSHFMNLMIDEC 44
           +++L++ +SL  NG R +  +L     FM    DEC
Sbjct: 671 VQRLVESISLDENGTRVITEVLCASQGFMRKTEDEC 706


>gi|213385305 LSM5 homolog, U6 small nuclear RNA associated
          isoform b [Homo sapiens]
          Length = 62

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 26 VQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVE---IGGNSIITL 69
          + G L GF  F+N+++++  +  I+ +   I  ++   + GN+I  L
Sbjct: 7  IVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 53


>gi|195222722 LSM5 homolog, U6 small nuclear RNA associated
          isoform b [Homo sapiens]
          Length = 62

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 26 VQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVE---IGGNSIITL 69
          + G L GF  F+N+++++  +  I+ +   I  ++   + GN+I  L
Sbjct: 7  IVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 53


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,297,734
Number of Sequences: 37866
Number of extensions: 66238
Number of successful extensions: 140
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 16
length of query: 75
length of database: 18,247,518
effective HSP length: 47
effective length of query: 28
effective length of database: 16,467,816
effective search space: 461098848
effective search space used: 461098848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.