Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169202788
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169202788 PREDICTED: hypothetical protein [Homo sapiens]
(224 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169202788 PREDICTED: hypothetical protein [Homo sapiens] 466 e-132
gi|89034671 PREDICTED: hypothetical protein [Homo sapiens] 466 e-132
gi|51470873 PREDICTED: hypothetical protein [Homo sapiens] 464 e-131
gi|45504351 hypothetical protein LOC389558 [Homo sapiens] 43 2e-04
gi|118130809 endothelial cell-specific chemotaxis regulator [Hom... 30 1.3
gi|239756691 PREDICTED: hypothetical protein [Homo sapiens] 29 3.7
gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo ... 29 3.7
gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo ... 29 3.7
gi|48255947 plasma membrane calcium ATPase 1 isoform 1a [Homo sa... 28 4.9
gi|48255945 plasma membrane calcium ATPase 1 isoform 1b [Homo sa... 28 4.9
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 28 4.9
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 28 4.9
gi|223633988 hypothetical protein LOC85379 [Homo sapiens] 28 6.3
gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo ... 28 6.3
gi|40786420 immunoglobulin-like domain containing receptor 2 [Ho... 28 6.3
gi|222352143 TBC1 domain family, member 2 [Homo sapiens] 28 8.3
gi|187171277 DNA-directed DNA polymerase gamma [Homo sapiens] 28 8.3
gi|4505937 DNA-directed DNA polymerase gamma [Homo sapiens] 28 8.3
gi|214010220 semaphorin 4D isoform 2 [Homo sapiens] 28 8.3
gi|214010218 semaphorin 4D isoform 1 [Homo sapiens] 28 8.3
>gi|169202788 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 466 bits (1200), Expect = e-132
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MTRITELWSSPQWKVGAEVCGRQMREQRTAEQSETQRTWLSMAATLQFLVCLVVAICLLS 60
MTRITELWSSPQWKVGAEVCGRQMREQRTAEQSETQRTWLSMAATLQFLVCLVVAICLLS
Sbjct: 1 MTRITELWSSPQWKVGAEVCGRQMREQRTAEQSETQRTWLSMAATLQFLVCLVVAICLLS 60
Query: 61 GVTTTQPHAGQPMDSTSVGGGLQEPEAPEVMFELLWAGLELDVMGQLHIQDEELASTHPG 120
GVTTTQPHAGQPMDSTSVGGGLQEPEAPEVMFELLWAGLELDVMGQLHIQDEELASTHPG
Sbjct: 61 GVTTTQPHAGQPMDSTSVGGGLQEPEAPEVMFELLWAGLELDVMGQLHIQDEELASTHPG 120
Query: 121 RRLRLLLQHHVPSDLEGTEQWLQQLQDLRKGPPLSTWDFEHLLLTGLSCVYRLHAASEAE 180
RRLRLLLQHHVPSDLEGTEQWLQQLQDLRKGPPLSTWDFEHLLLTGLSCVYRLHAASEAE
Sbjct: 121 RRLRLLLQHHVPSDLEGTEQWLQQLQDLRKGPPLSTWDFEHLLLTGLSCVYRLHAASEAE 180
Query: 181 ERGRWTQVFALLAQETLWDLCKGFCPQDRPPSLGSWASILDPFP 224
ERGRWTQVFALLAQETLWDLCKGFCPQDRPPSLGSWASILDPFP
Sbjct: 181 ERGRWTQVFALLAQETLWDLCKGFCPQDRPPSLGSWASILDPFP 224
>gi|89034671 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 466 bits (1200), Expect = e-132
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MTRITELWSSPQWKVGAEVCGRQMREQRTAEQSETQRTWLSMAATLQFLVCLVVAICLLS 60
MTRITELWSSPQWKVGAEVCGRQMREQRTAEQSETQRTWLSMAATLQFLVCLVVAICLLS
Sbjct: 1 MTRITELWSSPQWKVGAEVCGRQMREQRTAEQSETQRTWLSMAATLQFLVCLVVAICLLS 60
Query: 61 GVTTTQPHAGQPMDSTSVGGGLQEPEAPEVMFELLWAGLELDVMGQLHIQDEELASTHPG 120
GVTTTQPHAGQPMDSTSVGGGLQEPEAPEVMFELLWAGLELDVMGQLHIQDEELASTHPG
Sbjct: 61 GVTTTQPHAGQPMDSTSVGGGLQEPEAPEVMFELLWAGLELDVMGQLHIQDEELASTHPG 120
Query: 121 RRLRLLLQHHVPSDLEGTEQWLQQLQDLRKGPPLSTWDFEHLLLTGLSCVYRLHAASEAE 180
RRLRLLLQHHVPSDLEGTEQWLQQLQDLRKGPPLSTWDFEHLLLTGLSCVYRLHAASEAE
Sbjct: 121 RRLRLLLQHHVPSDLEGTEQWLQQLQDLRKGPPLSTWDFEHLLLTGLSCVYRLHAASEAE 180
Query: 181 ERGRWTQVFALLAQETLWDLCKGFCPQDRPPSLGSWASILDPFP 224
ERGRWTQVFALLAQETLWDLCKGFCPQDRPPSLGSWASILDPFP
Sbjct: 181 ERGRWTQVFALLAQETLWDLCKGFCPQDRPPSLGSWASILDPFP 224
>gi|51470873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 464 bits (1195), Expect = e-131
Identities = 223/224 (99%), Positives = 223/224 (99%)
Query: 1 MTRITELWSSPQWKVGAEVCGRQMREQRTAEQSETQRTWLSMAATLQFLVCLVVAICLLS 60
MTRITELWSSPQWKVGAEVCGRQMREQRTAEQSETQRTWLSMAATLQFLVCLVVAICLLS
Sbjct: 1 MTRITELWSSPQWKVGAEVCGRQMREQRTAEQSETQRTWLSMAATLQFLVCLVVAICLLS 60
Query: 61 GVTTTQPHAGQPMDSTSVGGGLQEPEAPEVMFELLWAGLELDVMGQLHIQDEELASTHPG 120
GVTTTQPHAGQPMDSTSVGGGLQEPEAPEVMFELLWAGLELDVMGQLHIQDEELASTHPG
Sbjct: 61 GVTTTQPHAGQPMDSTSVGGGLQEPEAPEVMFELLWAGLELDVMGQLHIQDEELASTHPG 120
Query: 121 RRLRLLLQHHVPSDLEGTEQWLQQLQDLRKGPPLSTWDFEHLLLTGLSCVYRLHAASEAE 180
RRLRLLLQHHVPSDLEGTEQWLQQLQDLRKGPPLSTWDFEHLLLTGLSCVYRLHAASEAE
Sbjct: 121 RRLRLLLQHHVPSDLEGTEQWLQQLQDLRKGPPLSTWDFEHLLLTGLSCVYRLHAASEAE 180
Query: 181 ERGRWTQVFALLAQETLWDLCKGFCPQDRPPSLGSWASILDPFP 224
ERGRW QVFALLAQETLWDLCKGFCPQDRPPSLGSWASILDPFP
Sbjct: 181 ERGRWAQVFALLAQETLWDLCKGFCPQDRPPSLGSWASILDPFP 224
>gi|45504351 hypothetical protein LOC389558 [Homo sapiens]
Length = 173
Score = 42.7 bits (99), Expect = 2e-04
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 86 EAPEVMFELLWAGLELDVMGQLHIQDEELASTHPGRRLRLLLQHHVPSDLEGTEQWLQQL 145
E E+++E L A LE+ Q+ I+DEELAS R + + +P + +++L
Sbjct: 52 EEVELLYEFLLAELEISPDLQISIKDEELASLRKASDFRTVCNNVIPKSIPD----IRRL 107
Query: 146 QDLRKGPP--LSTWDFEHLLLTGLSCVYRLHAASEAEERGRWTQVFALLAQETLWDLCKG 203
P L DFE +LT YR A S ++ W Q L Q DL +
Sbjct: 108 SASLSSHPGILKKEDFERTVLTLAYTAYRT-ALSHGHQKDIWAQSLVSLFQALRHDLMRS 166
Query: 204 FCP 206
P
Sbjct: 167 SQP 169
>gi|118130809 endothelial cell-specific chemotaxis regulator [Homo
sapiens]
Length = 205
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 24 MREQRTAEQSETQRTWLSMAA--TLQFLVCLVVAICLLSGVTT 64
MRE T S T T L++AA + F+V LVV + +L GV +
Sbjct: 104 MREDATILPSPTSETVLTVAAFGVISFIVILVVVVIILVGVVS 146
>gi|239756691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 28.9 bits (63), Expect = 3.7
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 98 GLELDVMGQLHIQDEELAST---------HPGRRLRLLL---QHHVPSDLEGTEQWLQQL 145
G E++V G+ Q E++ + G L LL+ +H VP DLEG + LQQL
Sbjct: 255 GQEVEVRGEGAQQVEDVVAPVVANDALALDRGAELHLLVTVVEHLVPQDLEGPTRALQQL 314
Query: 146 Q 146
Q
Sbjct: 315 Q 315
>gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo
sapiens]
Length = 319
Score = 28.9 bits (63), Expect = 3.7
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 98 GLELDVMGQLHIQDEELAST---------HPGRRLRLLL---QHHVPSDLEGTEQWLQQL 145
G E++V G+ Q E++ + G L LL+ +H VP DLEG + LQQL
Sbjct: 255 GQEVEVRGEGAQQVEDVVAPVVANDALALDRGAELHLLVTVVEHLVPQDLEGPTRALQQL 314
Query: 146 Q 146
Q
Sbjct: 315 Q 315
>gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo
sapiens]
Length = 319
Score = 28.9 bits (63), Expect = 3.7
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 98 GLELDVMGQLHIQDEELAST---------HPGRRLRLLL---QHHVPSDLEGTEQWLQQL 145
G E++V G+ Q E++ + G L LL+ +H VP DLEG + LQQL
Sbjct: 255 GQEVEVRGEGAQQVEDVVAPVVANDALALDRGAELHLLVTVVEHLVPQDLEGPTRALQQL 314
Query: 146 Q 146
Q
Sbjct: 315 Q 315
>gi|48255947 plasma membrane calcium ATPase 1 isoform 1a [Homo
sapiens]
Length = 1176
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 132 PSDLEGTEQWLQQLQDLRKGPPLSTWDFEHLLLTGLSCV 170
P EG +D G P WD E+ ++TGL+C+
Sbjct: 639 PMASEGLRTICLAFRDFPAGEPEPEWDNENDIVTGLTCI 677
>gi|48255945 plasma membrane calcium ATPase 1 isoform 1b [Homo
sapiens]
Length = 1220
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 132 PSDLEGTEQWLQQLQDLRKGPPLSTWDFEHLLLTGLSCV 170
P EG +D G P WD E+ ++TGL+C+
Sbjct: 639 PMASEGLRTICLAFRDFPAGEPEPEWDNENDIVTGLTCI 677
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform
5 [Homo sapiens]
Length = 6907
Score = 28.5 bits (62), Expect = 4.9
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 86 EAPEVMFELLWAGLELDVMGQLHIQDEEL--ASTHPGRRLRLLLQHHVPSDLEGTEQWLQ 143
E + ++L +LD + + H+Q E H ++ L + +P L TE WLQ
Sbjct: 341 EEKKSFLDVLSIKRDLDELDKDHLQLREAWDGLDHQINAWKIKLNYALPPPLHQTEAWLQ 400
Query: 144 QLQDL 148
++++L
Sbjct: 401 EVEEL 405
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform
1 [Homo sapiens]
Length = 6885
Score = 28.5 bits (62), Expect = 4.9
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 86 EAPEVMFELLWAGLELDVMGQLHIQDEEL--ASTHPGRRLRLLLQHHVPSDLEGTEQWLQ 143
E + ++L +LD + + H+Q E H ++ L + +P L TE WLQ
Sbjct: 341 EEKKSFLDVLSIKRDLDELDKDHLQLREAWDGLDHQINAWKIKLNYALPPPLHQTEAWLQ 400
Query: 144 QLQDL 148
++++L
Sbjct: 401 EVEEL 405
>gi|223633988 hypothetical protein LOC85379 [Homo sapiens]
Length = 1806
Score = 28.1 bits (61), Expect = 6.3
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 200 LCKGFCPQDRPPSLGSWASILDPF 223
+ K P DRP SLG+W+ LDPF
Sbjct: 1099 ILKTLKPTDRPSSLGAWS--LDPF 1120
>gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo
sapiens]
Length = 1595
Score = 28.1 bits (61), Expect = 6.3
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 200 LCKGFCPQDRPPSLGSWASILDPF 223
+ K P DRP SLG+W+ LDPF
Sbjct: 1099 ILKTLKPTDRPSSLGAWS--LDPF 1120
>gi|40786420 immunoglobulin-like domain containing receptor 2 [Homo
sapiens]
Length = 639
Score = 28.1 bits (61), Expect = 6.3
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 60 SGVTTTQPHAGQPMDSTSVGGGLQEPEAPEVMFELLWAGLELDVMGQLHIQDEELASTHP 119
SG+ +PH S S GG + + A E D M L+ ++ELA P
Sbjct: 270 SGMLMDKPHPPPLAPSDSTGGSHSVRKGYRIQ-----ADKERDSMKVLYYVEKELAQFDP 324
Query: 120 GRRLR 124
RR+R
Sbjct: 325 ARRMR 329
>gi|222352143 TBC1 domain family, member 2 [Homo sapiens]
Length = 917
Score = 27.7 bits (60), Expect = 8.3
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 141 WLQQLQDLRKGPPLSTWDFEHLLLTGLSCVYRLHAASEAEERGRWTQVFALLAQETLWDL 200
WLQQLQ + W+F + A +A G + L QE +L
Sbjct: 133 WLQQLQ-------MKRWEFHNSPPAP-------PATPDAALAGNGPVLHLELGQEEA-EL 177
Query: 201 CKGFCPQDRPPSLGSWASILDPFP 224
+ CP PP L A+ L PFP
Sbjct: 178 EEFLCPVKTPPGLVGVAAALQPFP 201
>gi|187171277 DNA-directed DNA polymerase gamma [Homo sapiens]
Length = 1239
Score = 27.7 bits (60), Expect = 8.3
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 138 TEQWLQQLQDLRKGPPLSTWDFEHL-LLTGLSCVYRLHAAS---EAEERGRWTQVFALLA 193
T+Q + + R+GP +S+WD+ + + L+ V+RL+ E E R + +
Sbjct: 326 TKQGQKSQRKARRGPAISSWDWLDISSVNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDI 385
Query: 194 QETLWDLCKGFCPQD 208
+E DL + +C QD
Sbjct: 386 RENFQDLMQ-YCAQD 399
>gi|4505937 DNA-directed DNA polymerase gamma [Homo sapiens]
Length = 1239
Score = 27.7 bits (60), Expect = 8.3
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 138 TEQWLQQLQDLRKGPPLSTWDFEHL-LLTGLSCVYRLHAAS---EAEERGRWTQVFALLA 193
T+Q + + R+GP +S+WD+ + + L+ V+RL+ E E R + +
Sbjct: 326 TKQGQKSQRKARRGPAISSWDWLDISSVNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDI 385
Query: 194 QETLWDLCKGFCPQD 208
+E DL + +C QD
Sbjct: 386 RENFQDLMQ-YCAQD 399
>gi|214010220 semaphorin 4D isoform 2 [Homo sapiens]
Length = 738
Score = 27.7 bits (60), Expect = 8.3
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 166 GLS--CVYRLHAASEAEERGRWTQVFALLAQETLWDLCKGFCPQDRP 210
GLS C Y L A E G++ Q + T W G P+ RP
Sbjct: 321 GLSAVCAYNLSTAEEVFSHGKYMQSTTVEQSHTKWVRYNGPVPKPRP 367
>gi|214010218 semaphorin 4D isoform 1 [Homo sapiens]
Length = 862
Score = 27.7 bits (60), Expect = 8.3
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 166 GLS--CVYRLHAASEAEERGRWTQVFALLAQETLWDLCKGFCPQDRP 210
GLS C Y L A E G++ Q + T W G P+ RP
Sbjct: 321 GLSAVCAYNLSTAEEVFSHGKYMQSTTVEQSHTKWVRYNGPVPKPRP 367
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,052,499
Number of Sequences: 37866
Number of extensions: 443485
Number of successful extensions: 1064
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1051
Number of HSP's gapped (non-prelim): 24
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.