Search of human proteins with 169178509

Search of human proteins with 169178509

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169178509 PREDICTED: similar to cofactor required for Sp1
transcriptional activation, subunit 8, 34kDa isoform 2 [Homo sapiens]
         (160 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169178509 PREDICTED: similar to cofactor required for Sp1 tra...   316   5e-87
gi|28558979 mediator complex subunit 27 [Homo sapiens]                316   5e-87
gi|169178511 PREDICTED: similar to cofactor required for Sp1 tra...   231   2e-61
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]          30   1.2  
gi|21450808 PARK2 co-regulated-like isoform 1 [Homo sapiens]           28   2.6  
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)...    28   3.4  
gi|13376725 coiled-coil domain containing 92 [Homo sapiens]            28   3.4  
gi|18641360 collectin sub-family member 12 [Homo sapiens]              28   4.4  
gi|110347429 mediator complex subunit 12 [Homo sapiens]                28   4.4  
gi|24233517 IKK interacting protein isoform 1 [Homo sapiens]           28   4.4  
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho...    27   5.7  
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho...    27   5.7  
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho...    27   5.7  
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    27   7.5  
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof...    27   7.5  
gi|47778940 C-type lectin, superfamily member 13 [Homo sapiens]        27   9.8  

>gi|169178509 PREDICTED: similar to cofactor required for Sp1
           transcriptional activation, subunit 8, 34kDa isoform 2
           [Homo sapiens]
          Length = 160

 Score =  316 bits (810), Expect = 5e-87
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL 60
           MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL
Sbjct: 1   MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL 60

Query: 61  HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYH 120
           HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYH
Sbjct: 61  HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYH 120

Query: 121 AGLASGLLNQQSLKRSANQMGVSAKRRPKAQPTTLVLPPQ 160
           AGLASGLLNQQSLKRSANQMGVSAKRRPKAQPTTLVLPPQ
Sbjct: 121 AGLASGLLNQQSLKRSANQMGVSAKRRPKAQPTTLVLPPQ 160


>gi|28558979 mediator complex subunit 27 [Homo sapiens]
          Length = 311

 Score =  316 bits (810), Expect = 5e-87
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL 60
           MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL
Sbjct: 1   MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL 60

Query: 61  HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYH 120
           HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYH
Sbjct: 61  HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYH 120

Query: 121 AGLASGLLNQQSLKRSANQMGVSAKRRPKAQPTTLVLPPQ 160
           AGLASGLLNQQSLKRSANQMGVSAKRRPKAQPTTLVLPPQ
Sbjct: 121 AGLASGLLNQQSLKRSANQMGVSAKRRPKAQPTTLVLPPQ 160


>gi|169178511 PREDICTED: similar to cofactor required for Sp1
           transcriptional activation, subunit 8, 34kDa isoform 1
           [Homo sapiens]
          Length = 130

 Score =  231 bits (590), Expect = 2e-61
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL 60
           MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL
Sbjct: 1   MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL 60

Query: 61  HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNK 116
           HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNK
Sbjct: 61  HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNK 116


>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
          Length = 331

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 35  LKDGMRNKETLEGREKAFIAHFQDNLHSVNRDLNELERLSNLVGKPSENHPLHNSGLLSL 94
           LKD   + + +E   +  I   +   +     LNELERL +    P        S  L L
Sbjct: 120 LKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGL 179

Query: 95  DPVQDKTPLYSQLLQAYKWSNKLQYHAGLASGLLNQQSLKRSANQMGVSAKRRPKAQPTT 154
              + +    ++  +  K  N+L  H G+  G  +Q    R A  + V A R P  Q + 
Sbjct: 180 SEARVQVWFQNRRAKCRKQENQL--HKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSH 237

Query: 155 LVLPP 159
             + P
Sbjct: 238 CNVTP 242


>gi|21450808 PARK2 co-regulated-like isoform 1 [Homo sapiens]
          Length = 221

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 50  KAFIAHFQDNLHSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQL 107
           KA + H  D +    R LN L +LS +VG    +H  H     SL  ++ K P Y  +
Sbjct: 164 KAALVHSDDEVFE--RGLNALVQLSVVVGPSLNDHLKHLLTSGSLSIIKSKIPTYCSI 219


>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
            [Homo sapiens]
          Length = 2073

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 59   NLHSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQ 109
            N++SVN ++N L  ++      S + P+ NSG  S     ++TP Y   +Q
Sbjct: 1978 NVNSVNMNMNTLNAMNGY----SMSQPMMNSGYHSNHGYMNQTPQYPMQMQ 2024


>gi|13376725 coiled-coil domain containing 92 [Homo sapiens]
          Length = 331

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 16/71 (22%), Positives = 33/71 (46%)

Query: 42  KETLEGREKAFIAHFQDNLHSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKT 101
           + T++ REK ++   +   H +    +ELE+ ++ +   +         L+S     D +
Sbjct: 120 ENTIKEREKKYLEELKAKSHKLTLLSSELEQRASTIAYLTSQLHAAKKKLMSSSGTSDAS 179

Query: 102 PLYSQLLQAYK 112
           P  S +L +YK
Sbjct: 180 PSGSPVLASYK 190


>gi|18641360 collectin sub-family member 12 [Homo sapiens]
          Length = 742

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 4   VINVSVNLEAFSQAISAIQALRSSVSRVF-------DCLKDGMRNKETLEGREKAFIAHF 56
           + N+  +++  SQAI  I+    ++ +VF       D LK+ +++ +TL     A     
Sbjct: 220 ITNLQRSVDDTSQAIQRIKNDFQNLQQVFLQAKKDTDWLKEKVQSLQTLAANNSALAKAN 279

Query: 57  QDNLHSVNRDLN 68
            D L  +N  LN
Sbjct: 280 NDTLEDMNSQLN 291


>gi|110347429 mediator complex subunit 12 [Homo sapiens]
          Length = 2177

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 85   PLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYHAGLASGLLNQQSL 133
            P   +G++ L+P   KT +Y Q   A     +L+     + G+L Q S+
Sbjct: 1879 PTTMTGVMGLEPSSYKTSVYRQQQPAVPQGQRLRQQLQQSQGMLGQSSV 1927


>gi|24233517 IKK interacting protein isoform 1 [Homo sapiens]
          Length = 377

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 11  LEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNLHSVNRDLNEL 70
           L+  + ++S +      VS + D + D   N+E L  R ++    FQ+      R L E+
Sbjct: 107 LQEATSSMSLMTQFEQEVSNLQDIMHDIQNNEEVLTQRMQSLNEKFQNITDFWKRSLEEM 166

Query: 71  ERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQ 109
              +++    SE   +H+   + ++  + +  L ++ L+
Sbjct: 167 NINTDIF--KSEAKHIHSQVTVQINSAEQEIKLLTERLK 203


>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
            sapiens]
          Length = 1645

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 80   PSENHPLHNSGLLSLDPVQDKTP 102
            P++  P+HN GLL + P+Q   P
Sbjct: 1482 PAQYSPMHNMGLLPMHPLQIPAP 1504


>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
            sapiens]
          Length = 1644

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 80   PSENHPLHNSGLLSLDPVQDKTP 102
            P++  P+HN GLL + P+Q   P
Sbjct: 1481 PAQYSPMHNMGLLPMHPLQIPAP 1503


>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
            sapiens]
          Length = 1640

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 80   PSENHPLHNSGLLSLDPVQDKTP 102
            P++  P+HN GLL + P+Q   P
Sbjct: 1477 PAQYSPMHNMGLLPMHPLQIPAP 1499


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
            [Homo sapiens]
          Length = 8749

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 20/150 (13%)

Query: 21   IQALRS-------SVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNLHSVNRDLNE-LER 72
            +QALR+       SV +   CL++ +      E      +A  +  L   +  L    ++
Sbjct: 2930 MQALRADWKQWEDSVFQTQSCLENLVSQMALSEQEFSGQVAQLEQALEQFSALLKTWAQQ 2989

Query: 73   LSNLVGKPSENHPLH--NSGLLSLDPVQDKTP----LYSQLLQAYKWSNKLQYHAGLASG 126
            L+ L GK ++   +   + G   LD +Q   P    L SQL +  ++S  L  ++G  SG
Sbjct: 2990 LTLLEGKNTDEEIVECWHKGQEILDALQKAEPRTEDLKSQLNELCRFSRDLSTYSGKVSG 3049

Query: 127  LLNQ------QSLKRSANQMGVSAKRRPKA 150
            L+ +      Q+ K   N+  +  +R  KA
Sbjct: 3050 LIKEYNCLCLQASKGCQNKEQILQQRFRKA 3079


>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
            [Homo sapiens]
          Length = 8797

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 20/150 (13%)

Query: 21   IQALRS-------SVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNLHSVNRDLNE-LER 72
            +QALR+       SV +   CL++ +      E      +A  +  L   +  L    ++
Sbjct: 2923 MQALRADWKQWEDSVFQTQSCLENLVSQMALSEQEFSGQVAQLEQALEQFSALLKTWAQQ 2982

Query: 73   LSNLVGKPSENHPLH--NSGLLSLDPVQDKTP----LYSQLLQAYKWSNKLQYHAGLASG 126
            L+ L GK ++   +   + G   LD +Q   P    L SQL +  ++S  L  ++G  SG
Sbjct: 2983 LTLLEGKNTDEEIVECWHKGQEILDALQKAEPRTEDLKSQLNELCRFSRDLSTYSGKVSG 3042

Query: 127  LLNQ------QSLKRSANQMGVSAKRRPKA 150
            L+ +      Q+ K   N+  +  +R  KA
Sbjct: 3043 LIKEYNCLCLQASKGCQNKEQILQQRFRKA 3072


>gi|47778940 C-type lectin, superfamily member 13 [Homo sapiens]
          Length = 589

 Score = 26.6 bits (57), Expect = 9.8
 Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 10  NLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNLHSVNR---D 66
           N+   +  I  +     + SR    LK GM+N   L  + +   ++ Q     + R   D
Sbjct: 368 NVNTLNAQIQVLNGHMKNASREIQTLKQGMKNASALTSQTQMLDSNLQKASAEIQRLRGD 427

Query: 67  LNELERLSNLVGKPSENHPLHNSGLLSLDPVQ-DKTPLYSQLLQAYKWSNKLQYH 120
           L   + L+  + +        +  + S + +Q  ++ L   +LQ +K++    Y+
Sbjct: 428 LENTKALTMEIQQEQSRLKTLHVVITSQEQLQRTQSQLLQMVLQGWKFNGGSLYY 482


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,537,253
Number of Sequences: 37866
Number of extensions: 221227
Number of successful extensions: 575
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 17
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.