Search of human proteins with 11128039

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11128039 protocadherin gamma subfamily A, 11 isoform 1
precursor [Homo sapiens]
         (935 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur...  1841   0.0  
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur...  1588   0.0  
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs...  1400   0.0  
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur...  1378   0.0  
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs...  1362   0.0  
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs...  1361   0.0  
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs...  1358   0.0  
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs...  1353   0.0  
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs...  1353   0.0  
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs...  1348   0.0  
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs...  1341   0.0  
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs...  1325   0.0  
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs...  1313   0.0  
gi|14196455 protocadherin gamma subfamily A, 11 isoform 3 precur...  1233   0.0  
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur...  1152   0.0  
gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precur...  1131   0.0  
gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precurs...  1112   0.0  
gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precurs...  1110   0.0  
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs...  1106   0.0  
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs...  1105   0.0  
gi|7662056 protocadherin gamma subfamily A, 8 isoform 2 precurso...  1103   0.0  
gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precurs...  1097   0.0  
gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precurs...  1093   0.0  
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs...  1078   0.0  
gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precurs...  1060   0.0  
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs...   936   0.0  
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs...   933   0.0  
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs...   924   0.0  
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs...   921   0.0  
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs...   916   0.0  

>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
           [Homo sapiens]
          Length = 935

 Score = 1841 bits (4769), Expect = 0.0
 Identities = 935/935 (100%), Positives = 935/935 (100%)

Query: 1   MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
           MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL
Sbjct: 1   MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60

Query: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
           AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV
Sbjct: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120

Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
           EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180

Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
           LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240

Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
           PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300

Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
           EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360

Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
           SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420

Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
           ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480

Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
           DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540

Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
           PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600

Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
           QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660

Query: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720
           LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW
Sbjct: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720

Query: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780
           HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL
Sbjct: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780

Query: 781 ISQESCEKSEPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGT 840
           ISQESCEKSEPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGT
Sbjct: 781 ISQESCEKSEPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGT 840

Query: 841 WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI 900
           WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI
Sbjct: 841 WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI 900

Query: 901 PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
           PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935


>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
           [Homo sapiens]
          Length = 837

 Score = 1588 bits (4113), Expect = 0.0
 Identities = 814/820 (99%), Positives = 814/820 (99%), Gaps = 4/820 (0%)

Query: 1   MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
           MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL
Sbjct: 1   MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60

Query: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
           AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV
Sbjct: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120

Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
           EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180

Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
           LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240

Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
           PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300

Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
           EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360

Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
           SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420

Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
           ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480

Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
           DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540

Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
           PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600

Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
           QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660

Query: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720
           LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW
Sbjct: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720

Query: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780
           HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL
Sbjct: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780

Query: 781 ISQESCEKSEPLLIAEDSAIILGKCDPTSNQ----QAPPN 816
           ISQESCEKSEPLLIAEDSAIILGKCDPTSNQ      PPN
Sbjct: 781 ISQESCEKSEPLLIAEDSAIILGKCDPTSNQVRFISLPPN 820


>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1400 bits (3624), Expect = 0.0
 Identities = 706/922 (76%), Positives = 796/922 (86%), Gaps = 2/922 (0%)

Query: 14  LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
           L+LL I LGTL      QIRYSVPEE EKGS VG+IS+DLGLEPRELA+RGVRI+ RG+T
Sbjct: 13  LVLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRT 72

Query: 74  QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
           QLFA+NPRSGSL+TAGRIDREELC     C LN+++L+ED +KIYGVEVE+ DINDNAP 
Sbjct: 73  QLFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPY 132

Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
           F+E E+EIK+SE+A    RF LP+A DPD+G NSLQSY+LSPN +FSL ++   DG+K P
Sbjct: 133 FRESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYP 192

Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
           ELVL+ +LDRE++AAH L+LTA DGGDP+R G   IRV+VLD ND+ P F Q  YR SVP
Sbjct: 193 ELVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVP 252

Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
           EN++ GT++L+VNATDPDEG+N EV YSFR ++ KA+++F+LD  +G +   G LD E+ 
Sbjct: 253 ENLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEES 312

Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
            FY+ME+Q  D  G      +LITV+DVNDNAPE+ +TS  +S+ ENSP GT+IALLNV 
Sbjct: 313 GFYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVN 372

Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
           DQDS ENGQV CFI  +LPFKLEK+YGNYY L+T  VLDRE V SYNIT+TATD+G+PPL
Sbjct: 373 DQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPL 432

Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
           S ETH+ LNVAD NDNPPVFP +SYSAYIPENNPRG S+ SVTA DPD ++NA +TYSL 
Sbjct: 433 STETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLA 492

Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
           ++T+QG  LSSYVSINS+TGVLYAL SFDYEQFRDL+++V+ARD+G PPLSSNVSLSLFV
Sbjct: 493 ENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFV 552

Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
           LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAWLSYRLLKAS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612

Query: 614 EPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVL 673
           EPGLF+VG HTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIP+VL
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVL 672

Query: 674 ADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGL 733
           ADLGSLES ANSETSDL+LYLVVAVAAVSC+FL FVI+LLALRL RWHKSRLLQAS GGL
Sbjct: 673 ADLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGGGL 732

Query: 734 AGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCEKSEPLL 793
            G P SHFVGVDGVQAFLQTYSHEVSL  DS+KSHLIFPQPNY D L+SQES EKSEPLL
Sbjct: 733 TGAPASHFVGVDGVQAFLQTYSHEVSLTTDSRKSHLIFPQPNYADMLVSQESFEKSEPLL 792

Query: 794 IAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 853
           ++ DS  +  K      +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA
Sbjct: 793 LSGDS--VFSKDSHGLIEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 850

Query: 854 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 913
           MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
Sbjct: 851 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 910

Query: 914 RDGKAPAGGNGNKKKSGKKEKK 935
           RDGKAPAGGNGNKKKSGKKEKK
Sbjct: 911 RDGKAPAGGNGNKKKSGKKEKK 932


>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
           [Homo sapiens]
          Length = 936

 Score = 1378 bits (3566), Expect = 0.0
 Identities = 698/933 (74%), Positives = 785/933 (84%), Gaps = 2/933 (0%)

Query: 3   NRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAK 62
           NR +       L+LLC+F G      ARQI YS+PEE EKGSFVGNISKDLGL PRELA+
Sbjct: 6   NRSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAE 65

Query: 63  RGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEV 122
           RGVRIVSRG+TQLF++NPRSGSLITAGRIDREELC   + C ++  +LVED +K++G+E+
Sbjct: 66  RGVRIVSRGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEI 125

Query: 123 EIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQ 182
           E+ DINDNAP FQ + +++K++E+   G RF LP A DPDVGVNSLQSYQLSPN +FSL+
Sbjct: 126 EVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLR 185

Query: 183 LRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPM 242
           ++ R +G K PELVLE SLDRE+EA H L+LTA DGGDP+R G V + V V D ND+ P+
Sbjct: 186 VQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPV 245

Query: 243 FTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEV 302
           FT   YRVSVPEN+  GT++L V ATD DEG NGEV YSFR +       FQL+  TGE+
Sbjct: 246 FTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEI 305

Query: 303 QVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSP 362
           ++  +LD+E+  FYE+EIQ +DGG    T  +LITV DVNDN+PE+TITS  + + E+SP
Sbjct: 306 KISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSP 365

Query: 363 PGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNIT 422
            GTV+ALLNV D DS +NGQV+C I  +LPFKLEK+  +YY+L+  R LDRE V SYNIT
Sbjct: 366 LGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNIT 425

Query: 423 LTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDS 482
           +TATD GSPPLS E H  L VAD NDNPP F   SY  YIPENN RGASIFSVTALDPDS
Sbjct: 426 VTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDS 485

Query: 483 KQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPP 542
           K+NA + YSL +DT+QGVPLSSY+SINS+TGVLYAL+SFDYEQF +L+++V A DSGDPP
Sbjct: 486 KENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPP 545

Query: 543 LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQN 602
           LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQN
Sbjct: 546 LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQN 605

Query: 603 AWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLT 662
           AWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLT
Sbjct: 606 AWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLT 665

Query: 663 VAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHK 722
           VAVADSIP+VLADLGS ES ANSETSDL+LYLVVAVAAVSC+FL FVIVLLA RL RWHK
Sbjct: 666 VAVADSIPQVLADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHK 725

Query: 723 SRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLIS 782
           SRLLQAS GGL G+  SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIFPQPNY DTLIS
Sbjct: 726 SRLLQASGGGLTGVSGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLIS 785

Query: 783 QESCEKSEPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 842
           QESCEK++PL + +DS   +   D     QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 786 QESCEKNDPLSLLDDSKFPIE--DTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 843

Query: 843 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 902
           NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 844 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 903

Query: 903 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
           SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 904 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 936


>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score = 1362 bits (3526), Expect = 0.0
 Identities = 690/935 (73%), Positives = 784/935 (83%), Gaps = 4/935 (0%)

Query: 1   MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
           MA    R D +RLL + C+ LG L   RA QI YSV EE E+GS VGNI+KDLGL PREL
Sbjct: 1   MAAPPARPDHTRLLQI-CLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPREL 59

Query: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
           A+RGVRIVSRG+TQLFA+NPRSG+L+TAGRIDREELC+   +C  N+E+L+EDT+KI  V
Sbjct: 60  AERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRV 119

Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
           EVEIID+NDN PSF  ++ EIKV+E+  PGARF LP A DPDVGVNSLQ YQL+ N YFS
Sbjct: 120 EVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFS 179

Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
           L ++   DG K PELVLE +LDRE+EA H L+LTA DGGDP+R G   I ++++D ND+ 
Sbjct: 180 LDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNA 239

Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
           P+FTQ  Y VSV EN+  GTR+L V ATDPDEG NG+V YSFR +  K S++FQL+S +G
Sbjct: 240 PVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSG 299

Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
           ++ + G LD+E   FY+++++  DG GL   + +L+TV+D NDNAPE+T+TS  +S+ E+
Sbjct: 300 DITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQES 359

Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
           S PGTVIAL NV D DSG NG V+C IP++LPF LEKTYGNYY+L+T R LDRE V  YN
Sbjct: 360 SSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYN 419

Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
           IT+TATDQG+PPLS ETH+ L V D NDNPP FPH+SYSAYIPENNPRGASI S+TA DP
Sbjct: 420 ITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDP 479

Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
           DS  NA +TYSL +DT QG PLSSYVSINSNTG+LYAL SFDYEQFRDL+L + A DSGD
Sbjct: 480 DSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGD 539

Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
           PPLSSNVSLSLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVD+DSG
Sbjct: 540 PPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSG 599

Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
           QNAWLSY LLK+SEPGLFAVG HTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVT
Sbjct: 600 QNAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVT 659

Query: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720
           LTVAVADSIP+VLADLGSL+  A+ + S L+LYLVVAVAAVSC+FL FV VLLAL+L RW
Sbjct: 660 LTVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRW 719

Query: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780
           HKSRLL A    LAG+P SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIF QP+Y DTL
Sbjct: 720 HKSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTL 779

Query: 781 ISQESCEKSEPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGT 840
           IS+ESCEKSEPLLI +D  ++  K DP + QQAPPNTDWRFSQAQRPGTSGSQNGDDTGT
Sbjct: 780 ISRESCEKSEPLLITQD--LLETKGDP-NLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGT 836

Query: 841 WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI 900
           WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI
Sbjct: 837 WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI 896

Query: 901 PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
           PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 897 PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931


>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1361 bits (3523), Expect = 0.0
 Identities = 691/924 (74%), Positives = 779/924 (84%), Gaps = 2/924 (0%)

Query: 12  RLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRG 71
           R L LLC  LGTL    + QIRYSV EE +KGSFVGNI+ DLGLEPRELA+RGVRIVSRG
Sbjct: 11  RGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRG 70

Query: 72  KTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNA 131
           +TQLF++NP+SGSL+TA RIDREELC  +  C + + +LVED LKI+ VE+EI DINDNA
Sbjct: 71  RTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNA 130

Query: 132 PSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAK 191
           P+F  +E+EIK+ E  +PG RF +  A DPDVG+NSLQ+Y+LSPN+YFSL +   ++GAK
Sbjct: 131 PNFPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAK 190

Query: 192 NPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVS 251
            PELVLE +LDREK+  H L+L A DGGDP+  G + I+V+VLD ND+ PMFTQ  YRVS
Sbjct: 191 YPELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVS 250

Query: 252 VPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFE 311
           V EN+  GTR+L VNATDPDEG N +V Y    M  K +EIF L+S +GEV +  SLD+E
Sbjct: 251 VWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYE 310

Query: 312 KYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLN 371
              FYE++I+ QDG GL +   +L+TV+DVNDNAPEITITS  +S+ E    G  IAL++
Sbjct: 311 DAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALID 370

Query: 372 VQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSP 431
           V D+DSG+NGQV  F+  +LPFKLEK+   YY+L+T+  LDRE +  YNI+L A+D GSP
Sbjct: 371 VHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSP 430

Query: 432 PLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYS 491
           PLS ETH+ L+V D NDNPP FPH SYSAYIPENNPRGASIFSVTA DPDS  NA +TY+
Sbjct: 431 PLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYA 490

Query: 492 LTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSL 551
           LT+DT+QG PLSS+VSINSNTGVLYAL+SFDYEQFRDL+L V A DSG+PPLSSNVSL+L
Sbjct: 491 LTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNL 550

Query: 552 FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLK 611
           FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAWLSYRLLK
Sbjct: 551 FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLK 610

Query: 612 ASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPE 671
           ASEPGLF+VG HTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD IP+
Sbjct: 611 ASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPD 670

Query: 672 VLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEG 731
           +LADLGSLE  A    SDL+LYLVVAVAAVSC+FL FVIVLLALRL RWHKSRLLQAS G
Sbjct: 671 ILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGG 730

Query: 732 GLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCEKSEP 791
           GLA  P SHFVG DGV+AFLQTYSHEVSL ADS+KSHLIFPQPNY DTLISQESCEKSEP
Sbjct: 731 GLASTPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEP 790

Query: 792 LLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML 851
           LLI +D  ++  K D    QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML
Sbjct: 791 LLITQD--LLEMKGDSNLLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML 848

Query: 852 QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA 911
           QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA
Sbjct: 849 QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA 908

Query: 912 GKRDGKAPAGGNGNKKKSGKKEKK 935
           GKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 909 GKRDGKAPAGGNGNKKKSGKKEKK 932


>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1358 bits (3515), Expect = 0.0
 Identities = 691/935 (73%), Positives = 782/935 (83%), Gaps = 3/935 (0%)

Query: 1   MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
           MA   +   RS  +LLL + LGTL G  A QIRYS+PEE EKGSFVGNI KDLGLEP+EL
Sbjct: 1   MAPPQRHPQRSEQVLLLTL-LGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQEL 59

Query: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
           A+ GVRIVSRG+ QLF++NPR+GSL+TAGRIDREELC     C ++  +LVED L +Y V
Sbjct: 60  AEHGVRIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPV 119

Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
           EVEI+DINDN P F ++E+E+K+ E+A P +RF L    DPDVG+NSLQ ++LS N++FS
Sbjct: 120 EVEIVDINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFS 179

Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
           + ++    G K PELVLEG+LDRE EA + L+LTA+DGGDP+R     I V VLDVND+ 
Sbjct: 180 VDVQSEAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNT 239

Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
           PMFTQ VYRVSVPEN+  GT VL V ATD DEG++GEV YSF  +  K S+IF L+  TG
Sbjct: 240 PMFTQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTG 299

Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
           E+    +LD+E   FYE+ ++ +DG GL     +LIT++DVNDN PE+ +TS   +I E+
Sbjct: 300 EISTSANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAES 359

Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
           +PPGTVIAL  V D+DSG NG V+C IP  LPF+LEK+ GNYY+L+T+  LDRE V  YN
Sbjct: 360 APPGTVIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYN 419

Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
           IT+TATD+G+PPLS ET + LNVAD NDNPP FPHSSYS Y+ ENNPRGASIFSV ALDP
Sbjct: 420 ITVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDP 479

Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
           D  QNA V+YSL +DT+QG PLSSYVSINS+TG+LYAL+SFDYEQ RDL+L V A DSGD
Sbjct: 480 DVDQNAQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGD 539

Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
           PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSG
Sbjct: 540 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSG 599

Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
           QNAWLSYRLLKASEPGLF+VG HTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT
Sbjct: 600 QNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 659

Query: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720
           LTVAVAD IP++LADLGSLE  A    SDL+LYLVVAVAAVSC+FL FVIVLLALRL RW
Sbjct: 660 LTVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRW 719

Query: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780
           HKSRLLQAS GGLA MP SHFVGV+GV+AFLQTYSHEVSL ADS+KSHLIFPQPNY DTL
Sbjct: 720 HKSRLLQASGGGLASMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTL 779

Query: 781 ISQESCEKSEPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGT 840
           I+QES EKSEPLLI +D  ++  K +P   QQAPPNTDWRFSQAQRPGTSGSQNGDDTGT
Sbjct: 780 INQESYEKSEPLLITQD--LLETKGEPRQLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGT 837

Query: 841 WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI 900
           WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI
Sbjct: 838 WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI 897

Query: 901 PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
           PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 898 PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932


>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score = 1353 bits (3503), Expect = 0.0
 Identities = 691/922 (74%), Positives = 773/922 (83%), Gaps = 3/922 (0%)

Query: 14  LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
           LLL  + LGTL    + QIRYS+PEE +KGSFVGNI+KDLGLEP+ELA+RGVRIVSRG+T
Sbjct: 13  LLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRT 72

Query: 74  QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
           QLFA+NPRSGSL+TAGRIDREELC     C +N  +LVE+ +KIYGVEVEIIDINDN P 
Sbjct: 73  QLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPR 132

Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
           F+++E+++KV+E+A  G R  LP ARD DVGVNSL+SYQLS N +FSL +   TDG K P
Sbjct: 133 FRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYP 192

Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
           ELVLE  LDREKE  H LLLTALDGGDP+  G   IRV VLD ND+ P+FT S Y VSVP
Sbjct: 193 ELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVP 252

Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
           ENI  GTR+LM+ ATDPDEGING++ YSFRN E K SE FQLDS  GE+    SLD+E+ 
Sbjct: 253 ENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEES 312

Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
           RFY ME+  QDGG L  +  +++TV DVNDNAPE+ +TS  +SI E+  PGTVIAL +V 
Sbjct: 313 RFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVH 372

Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
           D DSGENG+++C IP +LPFKLEK+  NYY L+T+R LDRE    YNITLT  D G+PPL
Sbjct: 373 DGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPL 432

Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
           S E+H+ L VAD NDNPP FP +SYS  + ENNPRG SIFSVTA DPDS  NA VTYSL 
Sbjct: 433 STESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLA 492

Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
           +DT QG PLSSYVSINS+TGVLYAL+SFDYEQ RDL+L V A DSG+PPLSSNVSLSLFV
Sbjct: 493 EDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFV 552

Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
           LDQNDN PEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS
Sbjct: 553 LDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 612

Query: 614 EPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVL 673
           EPGLFAVG HTGEVRTARALLDRDALKQSLVVAV+DHGQPPLSAT T+TVAVAD IP++L
Sbjct: 613 EPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDIL 672

Query: 674 ADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGL 733
           ADLGS+++  + E  DL+LYLVVAVAAVSC+FL FVIVLL LRL RWHKSRLLQA    L
Sbjct: 673 ADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEGSRL 732

Query: 734 AGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCEKSEPLL 793
           AG+P SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIFPQPNY DTL+S+ESCEKSEPLL
Sbjct: 733 AGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLLSEESCEKSEPLL 792

Query: 794 IAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 853
           +++    +    +    QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA
Sbjct: 793 MSDK---VDANKEERRVQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 849

Query: 854 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 913
           MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
Sbjct: 850 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 909

Query: 914 RDGKAPAGGNGNKKKSGKKEKK 935
           RDGKAPAGGNGNKKKSGKKEKK
Sbjct: 910 RDGKAPAGGNGNKKKSGKKEKK 931


>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1353 bits (3501), Expect = 0.0
 Identities = 690/933 (73%), Positives = 781/933 (83%), Gaps = 6/933 (0%)

Query: 3   NRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAK 62
           +R +RG+    L+LLC  LGTL      QIRYSVPEET+KGSFVGNISKDLGL+PR+LAK
Sbjct: 6   SRPRRGE----LILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLAK 61

Query: 63  RGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEV 122
            GVRIVSRG+TQLFA+NPRSGSLITAGRIDREELC     C +N+  LVED  K++GVE+
Sbjct: 62  HGVRIVSRGRTQLFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVEI 121

Query: 123 EIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQ 182
           EIIDINDN P FQ +++E+K++E A+PGAR+ LP A DPDVGVNSLQSYQLSPN++FSL 
Sbjct: 122 EIIDINDNNPKFQVEDLEVKINEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLD 181

Query: 183 LRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPM 242
           ++   +GA NPELVLE +LDRE+EAAH L+LTA DGG P R   V I V VLD ND+ P+
Sbjct: 182 VQTGDNGAINPELVLERALDREEEAAHHLVLTASDGGKPPRSSTVRIHVTVLDTNDNAPV 241

Query: 243 FTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEV 302
           F   +YRV V EN+  GTR+L V A+DPDEGING+V Y FR +  K + +FQL+  TGE+
Sbjct: 242 FPHPIYRVKVLENMPPGTRLLTVTASDPDEGINGKVAYKFRKINEKQTPLFQLNENTGEI 301

Query: 303 QVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSP 362
            +  SLD+E+  FYEMEIQ +D G L   T +LI+V DVNDN PE+ ITS  + +LENS 
Sbjct: 302 SIAKSLDYEECSFYEMEIQAEDVGALLGRTKLLISVEDVNDNRPEVIITSLFSPVLENSL 361

Query: 363 PGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNIT 422
           PGTVIA L+V DQDSG+NGQV C+  ++LPFKLEK+ GNYY+L+T + LDRE V  YNIT
Sbjct: 362 PGTVIAFLSVHDQDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNIT 421

Query: 423 LTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDS 482
           + A+D G+PPLS ET + L+VAD NDNPP FPH+SYSAYI ENN RGASIFS+TA DPDS
Sbjct: 422 VMASDLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPDS 481

Query: 483 KQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPP 542
           ++NA VTYS+T+DT+QG PLSSY+SINS+TGVLYALQSFDYEQ RDL+L V A DSGDPP
Sbjct: 482 QENAQVTYSVTEDTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDPP 541

Query: 543 LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQN 602
           LSSN+SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAE GYLVTKVVAVD+DSGQN
Sbjct: 542 LSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQN 601

Query: 603 AWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLT 662
           AWLSYRLLKASEPGLF+VG HTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLT
Sbjct: 602 AWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLT 661

Query: 663 VAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHK 722
           VAVADSIPEVL +LGSL+   +   S L+LYLVVAVAA+SC+FL FV VLL LRL RWHK
Sbjct: 662 VAVADSIPEVLTELGSLKPSVDPNDSSLTLYLVVAVAAISCVFLAFVAVLLGLRLRRWHK 721

Query: 723 SRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLIS 782
           SRLLQ S G L G+P SHFVGV+ VQAFLQTYS EVSL ADS+KSHLIFPQPNY D LIS
Sbjct: 722 SRLLQDSGGRLVGVPASHFVGVEEVQAFLQTYSQEVSLTADSRKSHLIFPQPNYADMLIS 781

Query: 783 QESCEKSEPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 842
           QE CEK++ LL + D      + D    QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 782 QEGCEKNDSLLTSVDFHEYKNEAD--HGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 839

Query: 843 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 902
           NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 840 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 899

Query: 903 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
           SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 900 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932


>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score = 1348 bits (3488), Expect = 0.0
 Identities = 678/922 (73%), Positives = 775/922 (84%), Gaps = 3/922 (0%)

Query: 14  LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
           L+LLC+ L  L    A  I YSVPEET+KGSFVGNI+KDLGL+P+ELA  GVRIVSRG+ 
Sbjct: 13  LMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGRM 72

Query: 74  QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
            LFA+NPRSGSLITA RIDREELC     C ++  +LVED +K++ VEVEIIDINDN P 
Sbjct: 73  PLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQ 132

Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
           FQ +E+E K++E   PG R +LP  +D DVG+NSLQSYQLS N +FSL ++   DG ++P
Sbjct: 133 FQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHP 192

Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
           E+VL+  LDRE+EA H L+LTA DGG+P+R G + I + V+D ND+ P FTQ+ Y ++VP
Sbjct: 193 EMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVP 252

Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
           EN+  GT++LMVNATDPDEG NGEV YSF N++ + ++IF+LDS TGE+  +  LDFE+Y
Sbjct: 253 ENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEEY 312

Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
           + Y ME+Q QDG GL     +LI V+DVNDNAPE+TITS   ++ EN PPGT+IAL++V 
Sbjct: 313 KMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVH 372

Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
           DQDSG+NG  +CFIP +LPFKLEK   NYY+L+T R LDREL+  YNIT+TA DQG+P L
Sbjct: 373 DQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPAL 432

Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
           S ETH+ L V D NDN PVF   SYSAYIPENNPRGASIFSV A D DS +NA +TYSL 
Sbjct: 433 STETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLI 492

Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
           +DT+QG PLS+Y+SINS+TGVLYAL+SFDYEQFRD++L+V+ARDSGDPPLSSNVSLSLF+
Sbjct: 493 EDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFL 552

Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
           LDQNDNAPEILYPALPTDGSTGVELAP SAEPGYLVTKVVAVD+DSGQNAWLSYRLLKAS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612

Query: 614 EPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVL 673
           EPGLF+VG HTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD I ++L
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDIL 672

Query: 674 ADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGL 733
           ADLGSLE  A    SDL+LYLVVA AAVSC+FL FVIVLLA RL RWHKSRLLQAS GGL
Sbjct: 673 ADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGL 732

Query: 734 AGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCEKSEPLL 793
           A MP SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIFPQPNY DTLISQESCEK     
Sbjct: 733 ASMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKG--F 790

Query: 794 IAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 853
           ++   +++  K +P S QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA
Sbjct: 791 LSAPQSLLEDKKEPFS-QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 849

Query: 854 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 913
           MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
Sbjct: 850 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 909

Query: 914 RDGKAPAGGNGNKKKSGKKEKK 935
           RDGKAPAGGNGNKKKSGKKEKK
Sbjct: 910 RDGKAPAGGNGNKKKSGKKEKK 931


>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1341 bits (3471), Expect = 0.0
 Identities = 683/929 (73%), Positives = 773/929 (83%), Gaps = 2/929 (0%)

Query: 7   RGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVR 66
           RG   R   LL I LGT     A +I YSV EET+KGSFVG+I+KDLGLEPRELA+RGVR
Sbjct: 6   RGGDYRGFFLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVR 65

Query: 67  IVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIID 126
           I+SRG+TQLFA+N RSGSL+TAGRIDREE+C   + C +N  +L+ED + +Y ++VEIID
Sbjct: 66  IISRGRTQLFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIID 125

Query: 127 INDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGR 186
           INDN P F  +E+ +K+ E+  PG RF L  A DPDVG NSLQSYQLSPN +FSL ++  
Sbjct: 126 INDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSG 185

Query: 187 TDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQS 246
            D  K PELVLE  LDRE+E  H L+LTA DGGDP R     I+V V+DVNDH P+F+  
Sbjct: 186 DDETKYPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLP 245

Query: 247 VYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRG 306
            Y+V+VPEN+  GTR+L V+A D DEG+NGEV YSFR +  K  ++F L+S TGE+    
Sbjct: 246 QYQVTVPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLE 305

Query: 307 SLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTV 366
            LD+E+  FYEME+Q QDG G  T   +LITV+DVNDNAPE+T+TS  +SI E++P GTV
Sbjct: 306 GLDYEETAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTV 365

Query: 367 IALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTAT 426
           IAL  +QD+DSG+NG+V+C IP +LPFKLEK+  NYY+L+T++ LDRE +  YNITL AT
Sbjct: 366 IALFYLQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKAT 425

Query: 427 DQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNA 486
           D G+PPLS ETH+++ VAD NDNPP FPHSSYS YI ENNPRGASIF VTA D DS+ NA
Sbjct: 426 DGGTPPLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNA 485

Query: 487 LVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSN 546
            +TYSL +DT+QG P+SSYVSINS+TGVLYALQSFDYEQ R+L+LRV A DSGDPPLSSN
Sbjct: 486 QITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSN 545

Query: 547 VSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 606
           +SLSLFVLDQNDN PEILYPALPTDGSTG+ELAPRSAEPGYLVTKVVAVDKDSGQNAWLS
Sbjct: 546 MSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 605

Query: 607 YRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 666
           Y LLKASEPGLFAVG +TGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA
Sbjct: 606 YLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 665

Query: 667 DSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLL 726
           DSIPEVLADLGSLE        DL+LYLVVAVA VSC+FL FV+VLLALRL RWHKSRLL
Sbjct: 666 DSIPEVLADLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLL 725

Query: 727 QASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESC 786
           QASEGGLA +PTSHFVG+DGVQAFLQTYSHEVSL ADS+KSHLIFPQPNY D LISQESC
Sbjct: 726 QASEGGLANVPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLISQESC 785

Query: 787 EKSEPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 846
           EK++ LL + D      K +  S QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 786 EKNDSLLTSVDFQEC--KENLPSIQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 843

Query: 847 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 906
           DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 844 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 903

Query: 907 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
           LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 904 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932


>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1325 bits (3428), Expect = 0.0
 Identities = 667/922 (72%), Positives = 764/922 (82%), Gaps = 2/922 (0%)

Query: 14  LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
           L+LLC  LG L   RA QIRYSVPEETEKG  VGNISKDL LEPRELA+R VRIVSRG+T
Sbjct: 13  LVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGRT 72

Query: 74  QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
           QLF++NPRSG+L+TAGRIDREELC     C +N ++LVED +K+YG+E+E+ DIND+AP 
Sbjct: 73  QLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAPK 132

Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
           FQ + +E+K++E A+PGAR+ LP A DPDVGVNSLQSYQLSPN++FSL ++   +GA NP
Sbjct: 133 FQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINP 192

Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
           ELVLE +LDRE+  AH L+LTA DGG+P R   V I V VLD ND+ P+F Q +YRV V 
Sbjct: 193 ELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVL 252

Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
           EN+  GT +L   A+D DEGING+V Y F  +  K S +FQL+  TGE+    SLD+E+ 
Sbjct: 253 ENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEEC 312

Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
            FYEMEIQ +DGGGL   T +LI+V DVNDN PE+TITS  + + E++P GTVI L N  
Sbjct: 313 SFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAH 372

Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
           D+DSG+NGQV C I  +L F LE +  +YY+L+T+++LDRE    YNIT+TATD+G+PPL
Sbjct: 373 DRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPL 432

Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
           S E H+ L V D NDNPP F  +SYS Y+PENN RG SIFSV A DPDS +N+ V YSL 
Sbjct: 433 STEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLA 492

Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
           +DT+QG PLS+YVSINS+TGVLYAL SFDYEQFRDL+++V A DSG PPLSSNVSL LFV
Sbjct: 493 EDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFV 552

Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
           LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAWLSYRL KAS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKAS 612

Query: 614 EPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVL 673
           EPGLF+VG HTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVA+ADSIP++L
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDIL 672

Query: 674 ADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGL 733
           ADLGSL+  A+ E SDL+LYLVVAVA VSC+FL FVI LLALRL  WH S LL+A+  GL
Sbjct: 673 ADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATSDGL 732

Query: 734 AGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCEKSEPLL 793
           AG+PTSHFVGVDGV+AFLQTYS E SL ADS+KSHLIFPQPNY DTLISQ+SCEK+EPL 
Sbjct: 733 AGVPTSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTLISQQSCEKNEPLC 792

Query: 794 IAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 853
           ++ DS   +   D     QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA
Sbjct: 793 VSVDSKFPIE--DTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 850

Query: 854 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 913
           MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
Sbjct: 851 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 910

Query: 914 RDGKAPAGGNGNKKKSGKKEKK 935
           RDGKAPAGGNGNKKKSGKKEKK
Sbjct: 911 RDGKAPAGGNGNKKKSGKKEKK 932


>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 1313 bits (3398), Expect = 0.0
 Identities = 667/931 (71%), Positives = 760/931 (81%), Gaps = 2/931 (0%)

Query: 5   LQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRG 64
           LQ+    R L+LLC  L TL   RA QIRYSV EE ++GSFVGNI+KDLGLEP  LA++G
Sbjct: 4   LQKLPHCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQG 63

Query: 65  VRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEI 124
           VRIVSRG++QLFA+NPRSGSL+TA RIDREELC   + C LN  +L+ED L IY VEVEI
Sbjct: 64  VRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEI 123

Query: 125 IDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLR 184
            DINDNAP F  +E+E+K+SE   PG R  L NA D DVG N+LQ Y L+PN++FSL +R
Sbjct: 124 TDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVR 183

Query: 185 GRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFT 244
              DG K PELVLE SLDRE+EA H L+L A DGGDP+  G   I V VLD ND+ P+FT
Sbjct: 184 RGADGNKYPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFT 243

Query: 245 QSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQV 304
           Q  YR+S+PEN   GTR+L V ATD DEG   +V+Y       + SE+F+L S +GE+ +
Sbjct: 244 QPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTI 303

Query: 305 RGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPG 364
              LD+E   F+E++I+ QDG GL T   +++TV+DVNDNAPE  +TS+ +S+ E+S PG
Sbjct: 304 IKDLDYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPG 363

Query: 365 TVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLT 424
           T+I L NV D+DSG+N   +C +P  LPFKLEK+  NYY+L+T+R LDRE    YNITLT
Sbjct: 364 TIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLT 423

Query: 425 ATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQ 484
           A D G+P LS + H+ L VAD NDN P F  +SYS YIPENNPRGAS+FSVTA DPDS  
Sbjct: 424 AKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSND 483

Query: 485 NALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLS 544
           NA VTYS  +DTVQG PLSSY+SINS+TGVLYAL+SFDYEQ RDL++ VIARDSG+PPLS
Sbjct: 484 NAHVTYSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLS 543

Query: 545 SNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAW 604
           SNVSLSLFVLDQNDNAPEILYPA PTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAW
Sbjct: 544 SNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAW 603

Query: 605 LSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVA 664
           LSY LLKASEPGLF+VG HTGEVRTARALLDRDALKQSLVVA+QDHGQPPLSATVTLTVA
Sbjct: 604 LSYHLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVA 663

Query: 665 VADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSR 724
           VAD IP++LADLGSLE  A    SDL+LYLVVAVAAVSC+FL FVIVLLA RL RWHKSR
Sbjct: 664 VADRIPDILADLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSR 723

Query: 725 LLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQE 784
           LLQAS G L GM +SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIFPQPNY DTLISQE
Sbjct: 724 LLQASGGSLTGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQE 783

Query: 785 SCEKSEPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 844
           SCEK +   ++   +++  + + T +QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
Sbjct: 784 SCEKKD--FLSAPQSLLEEEREETFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 841

Query: 845 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 904
           QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
Sbjct: 842 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 901

Query: 905 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
           ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 902 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932


>gi|14196455 protocadherin gamma subfamily A, 11 isoform 3 precursor
           [Homo sapiens]
          Length = 750

 Score = 1233 bits (3191), Expect = 0.0
 Identities = 626/626 (100%), Positives = 626/626 (100%)

Query: 1   MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
           MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL
Sbjct: 1   MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60

Query: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
           AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV
Sbjct: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120

Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
           EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS
Sbjct: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180

Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
           LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI
Sbjct: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240

Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
           PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG
Sbjct: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300

Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
           EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN
Sbjct: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360

Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
           SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN
Sbjct: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420

Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
           ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP
Sbjct: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480

Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
           DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD
Sbjct: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540

Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
           PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG
Sbjct: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600

Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626
           QNAWLSYRLLKASEPGLFAVGEHTGE
Sbjct: 601 QNAWLSYRLLKASEPGLFAVGEHTGE 626



 Score =  367 bits (941), Expect = e-101
 Identities = 267/753 (35%), Positives = 379/753 (50%), Gaps = 101/753 (13%)

Query: 249 RVSVPENISSGTRVLMVNATDPDEGINGEVMYS--FRNMESKASEIFQLDSQTGEVQVRG 306
           R SVPE    G+    V     D G+    +     R +    +++F ++ ++G +   G
Sbjct: 33  RYSVPEETEKGS---FVGNISKDLGLEPRELAKRGVRIVSRGKTQLFAVNPRSGSLITAG 89

Query: 307 SLDFEKYR------FYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
            +D E+        F  ME+  +D   ++      + ++D+NDNAP          + E+
Sbjct: 90  RIDREELCETVSSCFLNMELLVEDTLKIYGVE---VEIIDINDNAPSFQEDEVEIKVSEH 146

Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLE---KTYG-NYYKLITSRVLDRELV 416
           + PG   AL N +D D G N   S  +  +  F L+   +T G    +L+    LDRE  
Sbjct: 147 AIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPELVLEGSLDREKE 206

Query: 417 QSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVT 476
            ++ + LTA D G P       + + V D ND+ P+F  S Y   +PEN   G  +  V 
Sbjct: 207 AAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPENISSGTRVLMVN 266

Query: 477 ALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIAR 536
           A DPD   N  V YS  +   +    S    ++S TG +    S D+E++R  E+ +  +
Sbjct: 267 ATDPDEGINGEVMYSFRNMESKA---SEIFQLDSQTGEVQVRGSLDFEKYRFYEMEIQGQ 323

Query: 537 DSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD 596
           D G   L +  ++ + V+D NDNAPEI         ++ +     ++ PG ++  +   D
Sbjct: 324 DGGG--LFTTTTMLITVVDVNDNAPEITI-------TSSINSILENSPPGTVIALLNVQD 374

Query: 597 KDSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQ-SLVVAVQDHGQPPL 655
           +DSG+N  +S  +       L     +  ++ T+R +LDR+ ++  ++ +   D G PPL
Sbjct: 375 QDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSR-VLDRELVQSYNITLTATDQGSPPL 433

Query: 656 SATVTLTVAVADSI--PEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLL 713
           SA   + + VAD    P V         +  +     S++ V A+   S           
Sbjct: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDS----------- 482

Query: 714 ALRLWRWHKSRLLQASEGGLAGMPTSHFVGVD---GVQAFLQTYSHE------------- 757
                + +       ++  + G+P S +V ++   GV   LQ++ +E             
Sbjct: 483 -----KQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARD 537

Query: 758 -----------VSLIADSQKSH---LIFPQ-PNYGDTLISQESCEKSEPLLIAEDSAI-- 800
                      +SL    Q  +   +++P  P  G T +           L+ +  A+  
Sbjct: 538 SGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDK 597

Query: 801 -----------ILGKCDPT-------SNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 842
                      +L   +P        + +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 598 DSGQNAWLSYRLLKASEPGLFAVGEHTGEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 657

Query: 843 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 902
           NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 658 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 717

Query: 903 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
           SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 718 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 750



 Score =  153 bits (386), Expect = 8e-37
 Identities = 164/585 (28%), Positives = 248/585 (42%), Gaps = 72/585 (12%)

Query: 184 RGRTD-GAKNPE---LVLEGSLDREK---EAAHLLLLTALDGGDPIRKGAVPIRVVVLDV 236
           RG+T   A NP    L+  G +DRE+     +   L   L   D ++   V + ++  D+
Sbjct: 70  RGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEII--DI 127

Query: 237 NDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLD 296
           ND+ P F +    + V E+   G R  + NA DPD G+N     S ++ +   +  F L 
Sbjct: 128 NDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVN-----SLQSYQLSPNNYFSLQ 182

Query: 297 -------SQTGEVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVV--DVNDNAPE 347
                  ++  E+ + GSLD EK   + + +   DGG       + I VV  DVND+ P 
Sbjct: 183 LRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPM 242

Query: 348 ITITSSINSILENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLP-----FKLEKTYGNY 402
            T +    S+ EN   GT + ++N  D D G NG+V     N        F+L+   G  
Sbjct: 243 FTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG-- 300

Query: 403 YKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYI 462
            ++     LD E  + Y + +   D G   L   T + + V D NDN P    +S    I
Sbjct: 301 -EVQVRGSLDFEKYRFYEMEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINSI 357

Query: 463 PENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYAL---Q 519
            EN+P G  I  +   D DS +N  V+          +P      +    G  Y L   +
Sbjct: 358 LENSPPGTVIALLNVQDQDSGENGQVSCF--------IPNHLPFKLEKTYGNYYKLITSR 409

Query: 520 SFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELA 579
             D E  +   + + A D G PPLS+   + L V D NDN P  ++P      S+     
Sbjct: 410 VLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPP--VFPH-----SSYSAYI 462

Query: 580 PRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGL-----FAVGEHTGEVRTARALL 634
           P +   G  +  V A+D DS QNA ++Y L   +  G+      ++  +TG +   ++  
Sbjct: 463 PENNPRGASIFSVTALDPDSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFD 522

Query: 635 DRDALKQSLVVAVQDHGQPPLSATVTLTVAVA---DSIPEVLADLGSLESLANSETSDLS 691
                   L V  +D G PPLS+ V+L++ V    D+ PE+L      +     E +  S
Sbjct: 523 YEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRS 582

Query: 692 L---YLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGL 733
               YLV  V AV                  W   RLL+ASE GL
Sbjct: 583 AEPGYLVTKVVAVD----------KDSGQNAWLSYRLLKASEPGL 617


>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
           [Homo sapiens]
          Length = 820

 Score = 1152 bits (2979), Expect = 0.0
 Identities = 581/785 (74%), Positives = 669/785 (85%)

Query: 14  LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
           L+LL I LGTL      QIRYSVPEE EKGS VG+IS+DLGLEPRELA+RGVRI+ RG+T
Sbjct: 13  LVLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRT 72

Query: 74  QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
           QLFA+NPRSGSL+TAGRIDREELC     C LN+++L+ED +KIYGVEVE+ DINDNAP 
Sbjct: 73  QLFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPY 132

Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
           F+E E+EIK+SE+A    RF LP+A DPD+G NSLQSY+LSPN +FSL ++   DG+K P
Sbjct: 133 FRESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYP 192

Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
           ELVL+ +LDRE++AAH L+LTA DGGDP+R G   IRV+VLD ND+ P F Q  YR SVP
Sbjct: 193 ELVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVP 252

Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
           EN++ GT++L+VNATDPDEG+N EV YSFR ++ KA+++F+LD  +G +   G LD E+ 
Sbjct: 253 ENLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEES 312

Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
            FY+ME+Q  D  G      +LITV+DVNDNAPE+ +TS  +S+ ENSP GT+IALLNV 
Sbjct: 313 GFYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVN 372

Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
           DQDS ENGQV CFI  +LPFKLEK+YGNYY L+T  VLDRE V SYNIT+TATD+G+PPL
Sbjct: 373 DQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPL 432

Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
           S ETH+ LNVAD NDNPPVFP +SYSAYIPENNPRG S+ SVTA DPD ++NA +TYSL 
Sbjct: 433 STETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLA 492

Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
           ++T+QG  LSSYVSINS+TGVLYAL SFDYEQFRDL+++V+ARD+G PPLSSNVSLSLFV
Sbjct: 493 ENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFV 552

Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
           LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAWLSYRLLKAS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612

Query: 614 EPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVL 673
           EPGLF+VG HTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIP+VL
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVL 672

Query: 674 ADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGL 733
           ADLGSLES ANSETSDL+LYLVVAVAAVSC+FL FVI+LLALRL RWHKSRLLQAS GGL
Sbjct: 673 ADLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGGGL 732

Query: 734 AGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCEKSEPLL 793
            G P SHFVGVDGVQAFLQTYSHEVSL  DS+KSHLIFPQPNY D L+SQES EKSEPLL
Sbjct: 733 TGAPASHFVGVDGVQAFLQTYSHEVSLTTDSRKSHLIFPQPNYADMLVSQESFEKSEPLL 792

Query: 794 IAEDS 798
           ++ DS
Sbjct: 793 LSGDS 797


>gi|14196448 protocadherin gamma subfamily A, 10 isoform 2 precursor
           [Homo sapiens]
          Length = 850

 Score = 1131 bits (2925), Expect = 0.0
 Identities = 573/796 (71%), Positives = 659/796 (82%)

Query: 3   NRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAK 62
           NR +       L+LLC+F G      ARQI YS+PEE EKGSFVGNISKDLGL PRELA+
Sbjct: 6   NRSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAE 65

Query: 63  RGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEV 122
           RGVRIVSRG+TQLF++NPRSGSLITAGRIDREELC   + C ++  +LVED +K++G+E+
Sbjct: 66  RGVRIVSRGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEI 125

Query: 123 EIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQ 182
           E+ DINDNAP FQ + +++K++E+   G RF LP A DPDVGVNSLQSYQLSPN +FSL+
Sbjct: 126 EVTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLR 185

Query: 183 LRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPM 242
           ++ R +G K PELVLE SLDRE+EA H L+LTA DGGDP+R G V + V V D ND+ P+
Sbjct: 186 VQSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPV 245

Query: 243 FTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEV 302
           FT   YRVSVPEN+  GT++L V ATD DEG NGEV YSFR +       FQL+  TGE+
Sbjct: 246 FTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEI 305

Query: 303 QVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSP 362
           ++  +LD+E+  FYE+EIQ +DGG    T  +LITV DVNDN+PE+TITS  + + E+SP
Sbjct: 306 KISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSP 365

Query: 363 PGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNIT 422
            GTV+ALLNV D DS +NGQV+C I  +LPFKLEK+  +YY+L+  R LDRE V SYNIT
Sbjct: 366 LGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNIT 425

Query: 423 LTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDS 482
           +TATD GSPPLS E H  L VAD NDNPP F   SY  YIPENN RGASIFSVTALDPDS
Sbjct: 426 VTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDS 485

Query: 483 KQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPP 542
           K+NA + YSL +DT+QGVPLSSY+SINS+TGVLYAL+SFDYEQF +L+++V A DSGDPP
Sbjct: 486 KENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPP 545

Query: 543 LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQN 602
           LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQN
Sbjct: 546 LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQN 605

Query: 603 AWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLT 662
           AWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLT
Sbjct: 606 AWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLT 665

Query: 663 VAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHK 722
           VAVADSIP+VLADLGS ES ANSETSDL+LYLVVAVAAVSC+FL FVIVLLA RL RWHK
Sbjct: 666 VAVADSIPQVLADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHK 725

Query: 723 SRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLIS 782
           SRLLQAS GGL G+  SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIFPQPNY DTLIS
Sbjct: 726 SRLLQASGGGLTGVSGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLIS 785

Query: 783 QESCEKSEPLLIAEDS 798
           QESCEK++PL + +DS
Sbjct: 786 QESCEKNDPLSLLDDS 801


>gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precursor
           [Homo sapiens]
          Length = 820

 Score = 1112 bits (2875), Expect = 0.0
 Identities = 565/807 (70%), Positives = 658/807 (81%), Gaps = 3/807 (0%)

Query: 1   MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
           MA    R D +RLL + C+ LG L   RA QI YSV EE E+GS VGNI+KDLGL PREL
Sbjct: 1   MAAPPARPDHTRLLQI-CLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPREL 59

Query: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
           A+RGVRIVSRG+TQLFA+NPRSG+L+TAGRIDREELC+   +C  N+E+L+EDT+KI  V
Sbjct: 60  AERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRV 119

Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
           EVEIID+NDN PSF  ++ EIKV+E+  PGARF LP A DPDVGVNSLQ YQL+ N YFS
Sbjct: 120 EVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFS 179

Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
           L ++   DG K PELVLE +LDRE+EA H L+LTA DGGDP+R G   I ++++D ND+ 
Sbjct: 180 LDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNA 239

Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
           P+FTQ  Y VSV EN+  GTR+L V ATDPDEG NG+V YSFR +  K S++FQL+S +G
Sbjct: 240 PVFTQPEYHVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSG 299

Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
           ++ + G LD+E   FY+++++  DG GL   + +L+TV+D NDNAPE+T+TS  +S+ E+
Sbjct: 300 DITILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQES 359

Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
           S PGTVIAL NV D DSG NG V+C IP++LPF LEKTYGNYY+L+T R LDRE V  YN
Sbjct: 360 SSPGTVIALFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYN 419

Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
           IT+TATDQG+PPLS ETH+ L V D NDNPP FPH+SYSAYIPENNPRGASI S+TA DP
Sbjct: 420 ITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDP 479

Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
           DS  NA +TYSL +DT QG PLSSYVSINSNTG+LYAL SFDYEQFRDL+L + A DSGD
Sbjct: 480 DSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGD 539

Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
           PPLSSNVSLSLFVLDQNDN PEILYP  PTDGSTGVELAPRSA+ GYLVTKVVAVD+DSG
Sbjct: 540 PPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSG 599

Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
           QNAWLSY LLK+SEPGLFAVG HTGEVRTARALLDRDALKQ LVV VQDHGQPPLSATVT
Sbjct: 600 QNAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVT 659

Query: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720
           LTVAVADSIP+VLADLGSL+  A+ + S L+LYLVVAVAAVSC+FL FV VLLAL+L RW
Sbjct: 660 LTVAVADSIPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRW 719

Query: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780
           HKSRLL A    LAG+P SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIF QP+Y DTL
Sbjct: 720 HKSRLLHAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTL 779

Query: 781 ISQESCEKSEPLLIAEDSAIILGKCDP 807
           IS+ESCEKSEPLLI +D  ++  K DP
Sbjct: 780 ISRESCEKSEPLLITQD--LLETKGDP 804


>gi|14196465 protocadherin gamma subfamily A, 3 isoform 2 precursor
           [Homo sapiens]
          Length = 829

 Score = 1110 bits (2871), Expect = 0.0
 Identities = 564/786 (71%), Positives = 650/786 (82%)

Query: 12  RLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRG 71
           R L LLC  LGTL    + QIRYSV EE +KGSFVGNI+ DLGLEPRELA+RGVRIVSRG
Sbjct: 11  RGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRG 70

Query: 72  KTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNA 131
           +TQLF++NP+SGSL+TA RIDREELC  +  C + + +LVED LKI+ VE+EI DINDNA
Sbjct: 71  RTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNA 130

Query: 132 PSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAK 191
           P+F  +E+EIK+ E  +PG RF +  A DPDVG+NSLQ+Y+LSPN+YFSL +   ++GAK
Sbjct: 131 PNFPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAK 190

Query: 192 NPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVS 251
            PELVLE +LDREK+  H L+L A DGGDP+  G + I+V+VLD ND+ PMFTQ  YRVS
Sbjct: 191 YPELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVS 250

Query: 252 VPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFE 311
           V EN+  GTR+L VNATDPDEG N +V Y    M  K +EIF L+S +GEV +  SLD+E
Sbjct: 251 VWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYE 310

Query: 312 KYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLN 371
              FYE++I+ QDG GL +   +L+TV+DVNDNAPEITITS  +S+ E    G  IAL++
Sbjct: 311 DAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALID 370

Query: 372 VQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSP 431
           V D+DSG+NGQV  F+  +LPFKLEK+   YY+L+T+  LDRE +  YNI+L A+D GSP
Sbjct: 371 VHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSP 430

Query: 432 PLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYS 491
           PLS ETH+ L+V D NDNPP FPH SYSAYIPENNPRGASIFSVTA DPDS  NA +TY+
Sbjct: 431 PLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYA 490

Query: 492 LTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSL 551
           LT+DT+QG PLSS+VSINSNTGVLYAL+SFDYEQFRDL+L V A DSG+PPLSSNVSL+L
Sbjct: 491 LTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNL 550

Query: 552 FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLK 611
           FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAWLSYRLLK
Sbjct: 551 FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLK 610

Query: 612 ASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPE 671
           ASEPGLF+VG HTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD IP+
Sbjct: 611 ASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPD 670

Query: 672 VLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEG 731
           +LADLGSLE  A    SDL+LYLVVAVAAVSC+FL FVIVLLALRL RWHKSRLLQAS G
Sbjct: 671 ILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGG 730

Query: 732 GLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCEKSEP 791
           GLA  P SHFVG DGV+AFLQTYSHEVSL ADS+KSHLIFPQPNY DTLISQESCEKSEP
Sbjct: 731 GLASTPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEP 790

Query: 792 LLIAED 797
           LLI +D
Sbjct: 791 LLITQD 796


>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
           [Homo sapiens]
          Length = 813

 Score = 1106 bits (2861), Expect = 0.0
 Identities = 566/783 (72%), Positives = 646/783 (82%)

Query: 14  LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
           LLL  + LGTL    + QIRYS+PEE +KGSFVGNI+KDLGLEP+ELA+RGVRIVSRG+T
Sbjct: 13  LLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRT 72

Query: 74  QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
           QLFA+NPRSGSL+TAGRIDREELC     C +N  +LVE+ +KIYGVEVEIIDINDN P 
Sbjct: 73  QLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPR 132

Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
           F+++E+++KV+E+A  G R  LP ARD DVGVNSL+SYQLS N +FSL +   TDG K P
Sbjct: 133 FRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYP 192

Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
           ELVLE  LDREKE  H LLLTALDGGDP+  G   IRV VLD ND+ P+FT S Y VSVP
Sbjct: 193 ELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVP 252

Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
           ENI  GTR+LM+ ATDPDEGING++ YSFRN E K SE FQLDS  GE+    SLD+E+ 
Sbjct: 253 ENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEES 312

Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
           RFY ME+  QDGG L  +  +++TV DVNDNAPE+ +TS  +SI E+  PGTVIAL +V 
Sbjct: 313 RFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVH 372

Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
           D DSGENG+++C IP +LPFKLEK+  NYY L+T+R LDRE    YNITLT  D G+PPL
Sbjct: 373 DGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPL 432

Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
           S E+H+ L VAD NDNPP FP +SYS  + ENNPRG SIFSVTA DPDS  NA VTYSL 
Sbjct: 433 STESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLA 492

Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
           +DT QG PLSSYVSINS+TGVLYAL+SFDYEQ RDL+L V A DSG+PPLSSNVSLSLFV
Sbjct: 493 EDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFV 552

Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
           LDQNDN PEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS
Sbjct: 553 LDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 612

Query: 614 EPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVL 673
           EPGLFAVG HTGEVRTARALLDRDALKQSLVVAV+DHGQPPLSAT T+TVAVAD IP++L
Sbjct: 613 EPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDIL 672

Query: 674 ADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGL 733
           ADLGS+++  + E  DL+LYLVVAVAAVSC+FL FVIVLL LRL RWHKSRLLQA    L
Sbjct: 673 ADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEGSRL 732

Query: 734 AGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCEKSEPLL 793
           AG+P SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIFPQPNY DTL+S+ESCEKSEPLL
Sbjct: 733 AGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLLSEESCEKSEPLL 792

Query: 794 IAE 796
           +++
Sbjct: 793 MSD 795


>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
           [Homo sapiens]
          Length = 818

 Score = 1105 bits (2857), Expect = 0.0
 Identities = 564/797 (70%), Positives = 652/797 (81%), Gaps = 1/797 (0%)

Query: 1   MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
           MA   +   RS  +LLL + LGTL G  A QIRYS+PEE EKGSFVGNI KDLGLEP+EL
Sbjct: 1   MAPPQRHPQRSEQVLLLTL-LGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQEL 59

Query: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
           A+ GVRIVSRG+ QLF++NPR+GSL+TAGRIDREELC     C ++  +LVED L +Y V
Sbjct: 60  AEHGVRIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPV 119

Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
           EVEI+DINDN P F ++E+E+K+ E+A P +RF L    DPDVG+NSLQ ++LS N++FS
Sbjct: 120 EVEIVDINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFS 179

Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
           + ++    G K PELVLEG+LDRE EA + L+LTA+DGGDP+R     I V VLDVND+ 
Sbjct: 180 VDVQSEAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNT 239

Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
           PMFTQ VYRVSVPEN+  GT VL V ATD DEG++GEV YSF  +  K S+IF L+  TG
Sbjct: 240 PMFTQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTG 299

Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
           E+    +LD+E   FYE+ ++ +DG GL     +LIT++DVNDN PE+ +TS   +I E+
Sbjct: 300 EISTSANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAES 359

Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
           +PPGTVIAL  V D+DSG NG V+C IP  LPF+LEK+ GNYY+L+T+  LDRE V  YN
Sbjct: 360 APPGTVIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYN 419

Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
           IT+TATD+G+PPLS ET + LNVAD NDNPP FPHSSYS Y+ ENNPRGASIFSV ALDP
Sbjct: 420 ITVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDP 479

Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
           D  QNA V+YSL +DT+QG PLSSYVSINS+TG+LYAL+SFDYEQ RDL+L V A DSGD
Sbjct: 480 DVDQNAQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGD 539

Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
           PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSG
Sbjct: 540 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSG 599

Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
           QNAWLSYRLLKASEPGLF+VG HTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT
Sbjct: 600 QNAWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 659

Query: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720
           LTVAVAD IP++LADLGSLE  A    SDL+LYLVVAVAAVSC+FL FVIVLLALRL RW
Sbjct: 660 LTVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRW 719

Query: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780
           HKSRLLQAS GGLA MP SHFVGV+GV+AFLQTYSHEVSL ADS+KSHLIFPQPNY DTL
Sbjct: 720 HKSRLLQASGGGLASMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTL 779

Query: 781 ISQESCEKSEPLLIAED 797
           I+QES EKSEPLLI +D
Sbjct: 780 INQESYEKSEPLLITQD 796


>gi|7662056 protocadherin gamma subfamily A, 8 isoform 2 precursor
           [Homo sapiens]
          Length = 820

 Score = 1103 bits (2853), Expect = 0.0
 Identities = 564/795 (70%), Positives = 654/795 (82%), Gaps = 4/795 (0%)

Query: 3   NRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAK 62
           +R +RG+    L+LLC  LGTL      QIRYSVPEET+KGSFVGNISKDLGL+PR+LAK
Sbjct: 6   SRPRRGE----LILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLAK 61

Query: 63  RGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEV 122
            GVRIVSRG+TQLFA+NPRSGSLITAGRIDREELC     C +N+  LVED  K++GVE+
Sbjct: 62  HGVRIVSRGRTQLFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVEI 121

Query: 123 EIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQ 182
           EIIDINDN P FQ +++E+K++E A+PGAR+ LP A DPDVGVNSLQSYQLSPN++FSL 
Sbjct: 122 EIIDINDNNPKFQVEDLEVKINEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLD 181

Query: 183 LRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPM 242
           ++   +GA NPELVLE +LDRE+EAAH L+LTA DGG P R   V I V VLD ND+ P+
Sbjct: 182 VQTGDNGAINPELVLERALDREEEAAHHLVLTASDGGKPPRSSTVRIHVTVLDTNDNAPV 241

Query: 243 FTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEV 302
           F   +YRV V EN+  GTR+L V A+DPDEGING+V Y FR +  K + +FQL+  TGE+
Sbjct: 242 FPHPIYRVKVLENMPPGTRLLTVTASDPDEGINGKVAYKFRKINEKQTPLFQLNENTGEI 301

Query: 303 QVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSP 362
            +  SLD+E+  FYEMEIQ +D G L   T +LI+V DVNDN PE+ ITS  + +LENS 
Sbjct: 302 SIAKSLDYEECSFYEMEIQAEDVGALLGRTKLLISVEDVNDNRPEVIITSLFSPVLENSL 361

Query: 363 PGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNIT 422
           PGTVIA L+V DQDSG+NGQV C+  ++LPFKLEK+ GNYY+L+T + LDRE V  YNIT
Sbjct: 362 PGTVIAFLSVHDQDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNIT 421

Query: 423 LTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDS 482
           + A+D G+PPLS ET + L+VAD NDNPP FPH+SYSAYI ENN RGASIFS+TA DPDS
Sbjct: 422 VMASDLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPDS 481

Query: 483 KQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPP 542
           ++NA VTYS+T+DT+QG PLSSY+SINS+TGVLYALQSFDYEQ RDL+L V A DSGDPP
Sbjct: 482 QENAQVTYSVTEDTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDPP 541

Query: 543 LSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQN 602
           LSSN+SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAE GYLVTKVVAVD+DSGQN
Sbjct: 542 LSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQN 601

Query: 603 AWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLT 662
           AWLSYRLLKASEPGLF+VG HTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLT
Sbjct: 602 AWLSYRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLT 661

Query: 663 VAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHK 722
           VAVADSIPEVL +LGSL+   +   S L+LYLVVAVAA+SC+FL FV VLL LRL RWHK
Sbjct: 662 VAVADSIPEVLTELGSLKPSVDPNDSSLTLYLVVAVAAISCVFLAFVAVLLGLRLRRWHK 721

Query: 723 SRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLIS 782
           SRLLQ S G L G+P SHFVGV+ VQAFLQTYS EVSL ADS+KSHLIFPQPNY D LIS
Sbjct: 722 SRLLQDSGGRLVGVPASHFVGVEEVQAFLQTYSQEVSLTADSRKSHLIFPQPNYADMLIS 781

Query: 783 QESCEKSEPLLIAED 797
           QE CEK++ LL + D
Sbjct: 782 QEGCEKNDSLLTSVD 796


>gi|14196459 protocadherin gamma subfamily A, 1 isoform 2 precursor
           [Homo sapiens]
          Length = 823

 Score = 1097 bits (2838), Expect = 0.0
 Identities = 554/788 (70%), Positives = 646/788 (81%), Gaps = 4/788 (0%)

Query: 14  LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
           L+LLC+ L  L    A  I YSVPEET+KGSFVGNI+KDLGL+P+ELA  GVRIVSRG+ 
Sbjct: 13  LMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGRM 72

Query: 74  QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
            LFA+NPRSGSLITA RIDREELC     C ++  +LVED +K++ VEVEIIDINDN P 
Sbjct: 73  PLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQ 132

Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
           FQ +E+E K++E   PG R +LP  +D DVG+NSLQSYQLS N +FSL ++   DG ++P
Sbjct: 133 FQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHP 192

Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
           E+VL+  LDRE+EA H L+LTA DGG+P+R G + I + V+D ND+ P FTQ+ Y ++VP
Sbjct: 193 EMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVP 252

Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
           EN+  GT++LMVNATDPDEG NGEV YSF N++ + ++IF+LDS TGE+  +  LDFE+Y
Sbjct: 253 ENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEEY 312

Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
           + Y ME+Q QDG GL     +LI V+DVNDNAPE+TITS   ++ EN PPGT+IAL++V 
Sbjct: 313 KMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVH 372

Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
           DQDSG+NG  +CFIP +LPFKLEK   NYY+L+T R LDREL+  YNIT+TA DQG+P L
Sbjct: 373 DQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPAL 432

Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
           S ETH+ L V D NDN PVF   SYSAYIPENNPRGASIFSV A D DS +NA +TYSL 
Sbjct: 433 STETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLI 492

Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
           +DT+QG PLS+Y+SINS+TGVLYAL+SFDYEQFRD++L+V+ARDSGDPPLSSNVSLSLF+
Sbjct: 493 EDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFL 552

Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
           LDQNDNAPEILYPALPTDGSTGVELAP SAEPGYLVTKVVAVD+DSGQNAWLSYRLLKAS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612

Query: 614 EPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVL 673
           EPGLF+VG HTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD I ++L
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDIL 672

Query: 674 ADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGL 733
           ADLGSLE  A    SDL+LYLVVA AAVSC+FL FVIVLLA RL RWHKSRLLQAS GGL
Sbjct: 673 ADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGL 732

Query: 734 AGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCEK----S 789
           A MP SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIFPQPNY DTLISQESCEK    S
Sbjct: 733 ASMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKGFLS 792

Query: 790 EPLLIAED 797
            P  + ED
Sbjct: 793 APQSLLED 800


>gi|14196477 protocadherin gamma subfamily A, 7 isoform 2 precursor
           [Homo sapiens]
          Length = 817

 Score = 1093 bits (2827), Expect = 0.0
 Identities = 556/791 (70%), Positives = 645/791 (81%)

Query: 7   RGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVR 66
           RG   R   LL I LGT     A +I YSV EET+KGSFVG+I+KDLGLEPRELA+RGVR
Sbjct: 6   RGGDYRGFFLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVR 65

Query: 67  IVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIID 126
           I+SRG+TQLFA+N RSGSL+TAGRIDREE+C   + C +N  +L+ED + +Y ++VEIID
Sbjct: 66  IISRGRTQLFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIID 125

Query: 127 INDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGR 186
           INDN P F  +E+ +K+ E+  PG RF L  A DPDVG NSLQSYQLSPN +FSL ++  
Sbjct: 126 INDNVPRFLTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSG 185

Query: 187 TDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQS 246
            D  K PELVLE  LDRE+E  H L+LTA DGGDP R     I+V V+DVNDH P+F+  
Sbjct: 186 DDETKYPELVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLP 245

Query: 247 VYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRG 306
            Y+V+VPEN+  GTR+L V+A D DEG+NGEV YSFR +  K  ++F L+S TGE+    
Sbjct: 246 QYQVTVPENVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLE 305

Query: 307 SLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTV 366
            LD+E+  FYEME+Q QDG G  T   +LITV+DVNDNAPE+T+TS  +SI E++P GTV
Sbjct: 306 GLDYEETAFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTV 365

Query: 367 IALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTAT 426
           IAL  +QD+DSG+NG+V+C IP +LPFKLEK+  NYY+L+T++ LDRE +  YNITL AT
Sbjct: 366 IALFYLQDRDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKAT 425

Query: 427 DQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNA 486
           D G+PPLS ETH+++ VAD NDNPP FPHSSYS YI ENNPRGASIF VTA D DS+ NA
Sbjct: 426 DGGTPPLSRETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNA 485

Query: 487 LVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSN 546
            +TYSL +DT+QG P+SSYVSINS+TGVLYALQSFDYEQ R+L+LRV A DSGDPPLSSN
Sbjct: 486 QITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSN 545

Query: 547 VSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 606
           +SLSLFVLDQNDN PEILYPALPTDGSTG+ELAPRSAEPGYLVTKVVAVDKDSGQNAWLS
Sbjct: 546 MSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 605

Query: 607 YRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 666
           Y LLKASEPGLFAVG +TGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA
Sbjct: 606 YLLLKASEPGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 665

Query: 667 DSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLL 726
           DSIPEVLADLGSLE        DL+LYLVVAVA VSC+FL FV+VLLALRL RWHKSRLL
Sbjct: 666 DSIPEVLADLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLL 725

Query: 727 QASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESC 786
           QASEGGLA +PTSHFVG+DGVQAFLQTYSHEVSL ADS+KSHLIFPQPNY D LISQESC
Sbjct: 726 QASEGGLANVPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLISQESC 785

Query: 787 EKSEPLLIAED 797
           EK++ LL + D
Sbjct: 786 EKNDSLLTSVD 796


>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
           [Homo sapiens]
          Length = 828

 Score = 1078 bits (2787), Expect = 0.0
 Identities = 542/785 (69%), Positives = 638/785 (81%)

Query: 14  LLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKT 73
           L+LLC  LG L   RA QIRYSVPEETEKG  VGNISKDL LEPRELA+R VRIVSRG+T
Sbjct: 13  LVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGRT 72

Query: 74  QLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPS 133
           QLF++NPRSG+L+TAGRIDREELC     C +N ++LVED +K+YG+E+E+ DIND+AP 
Sbjct: 73  QLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAPK 132

Query: 134 FQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNP 193
           FQ + +E+K++E A+PGAR+ LP A DPDVGVNSLQSYQLSPN++FSL ++   +GA NP
Sbjct: 133 FQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINP 192

Query: 194 ELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVP 253
           ELVLE +LDRE+  AH L+LTA DGG+P R   V I V VLD ND+ P+F Q +YRV V 
Sbjct: 193 ELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVL 252

Query: 254 ENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKY 313
           EN+  GT +L   A+D DEGING+V Y F  +  K S +FQL+  TGE+    SLD+E+ 
Sbjct: 253 ENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEEC 312

Query: 314 RFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQ 373
            FYEMEIQ +DGGGL   T +LI+V DVNDN PE+TITS  + + E++P GTVI L N  
Sbjct: 313 SFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAH 372

Query: 374 DQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPL 433
           D+DSG+NGQV C I  +L F LE +  +YY+L+T+++LDRE    YNIT+TATD+G+PPL
Sbjct: 373 DRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPL 432

Query: 434 SAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLT 493
           S E H+ L V D NDNPP F  +SYS Y+PENN RG SIFSV A DPDS +N+ V YSL 
Sbjct: 433 STEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLA 492

Query: 494 DDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFV 553
           +DT+QG PLS+YVSINS+TGVLYAL SFDYEQFRDL+++V A DSG PPLSSNVSL LFV
Sbjct: 493 EDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFV 552

Query: 554 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKAS 613
           LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAWLSYRL KAS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKAS 612

Query: 614 EPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVL 673
           EPGLF+VG HTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVA+ADSIP++L
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDIL 672

Query: 674 ADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGL 733
           ADLGSL+  A+ E SDL+LYLVVAVA VSC+FL FVI LLALRL  WH S LL+A+  GL
Sbjct: 673 ADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATSDGL 732

Query: 734 AGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCEKSEPLL 793
           AG+PTSHFVGVDGV+AFLQTYS E SL ADS+KSHLIFPQPNY DTLISQ+SCEK+EPL 
Sbjct: 733 AGVPTSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTLISQQSCEKNEPLC 792

Query: 794 IAEDS 798
           ++ DS
Sbjct: 793 VSVDS 797


>gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precursor
           [Homo sapiens]
          Length = 823

 Score = 1060 bits (2742), Expect = 0.0
 Identities = 541/786 (68%), Positives = 626/786 (79%)

Query: 5   LQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRG 64
           LQ+    R L+LLC  L TL   RA QIRYSV EE ++GSFVGNI+KDLGLEP  LA++G
Sbjct: 4   LQKLPHCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQG 63

Query: 65  VRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEI 124
           VRIVSRG++QLFA+NPRSGSL+TA RIDREELC   + C LN  +L+ED L IY VEVEI
Sbjct: 64  VRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEI 123

Query: 125 IDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLR 184
            DINDNAP F  +E+E+K+SE   PG R  L NA D DVG N+LQ Y L+PN++FSL +R
Sbjct: 124 TDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVR 183

Query: 185 GRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFT 244
              DG K PELVLE SLDRE+EA H L+L A DGGDP+  G   I V VLD ND+ P+FT
Sbjct: 184 RGADGNKYPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFT 243

Query: 245 QSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQV 304
           Q  YR+S+PEN   GTR+L V ATD DEG   +V+Y       + SE+F+L S +GE+ +
Sbjct: 244 QPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTI 303

Query: 305 RGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPG 364
              LD+E   F+E++I+ QDG GL T   +++TV+DVNDNAPE  +TS+ +S+ E+S PG
Sbjct: 304 IKDLDYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPG 363

Query: 365 TVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLT 424
           T+I L NV D+DSG+N   +C +P  LPFKLEK+  NYY+L+T+R LDRE    YNITLT
Sbjct: 364 TIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLT 423

Query: 425 ATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQ 484
           A D G+P LS + H+ L VAD NDN P F  +SYS YIPENNPRGAS+FSVTA DPDS  
Sbjct: 424 AKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSND 483

Query: 485 NALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLS 544
           NA VTYS  +DTVQG PLSSY+SINS+TGVLYAL+SFDYEQ RDL++ VIARDSG+PPLS
Sbjct: 484 NAHVTYSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLS 543

Query: 545 SNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAW 604
           SNVSLSLFVLDQNDNAPEILYPA PTDGSTGVELAPRSAEPGYLVTKVVAVD+DSGQNAW
Sbjct: 544 SNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAW 603

Query: 605 LSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVA 664
           LSY LLKASEPGLF+VG HTGEVRTARALLDRDALKQSLVVA+QDHGQPPLSATVTLTVA
Sbjct: 604 LSYHLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVA 663

Query: 665 VADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSR 724
           VAD IP++LADLGSLE  A    SDL+LYLVVAVAAVSC+FL FVIVLLA RL RWHKSR
Sbjct: 664 VADRIPDILADLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSR 723

Query: 725 LLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQE 784
           LLQAS G L GM +SHFVGVDGV+AFLQTYSHEVSL ADS+KSHLIFPQPNY DTLISQE
Sbjct: 724 LLQASGGSLTGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQE 783

Query: 785 SCEKSE 790
           SCEK +
Sbjct: 784 SCEKKD 789


>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
           [Homo sapiens]
          Length = 929

 Score =  936 bits (2419), Expect = 0.0
 Identities = 504/942 (53%), Positives = 645/942 (68%), Gaps = 26/942 (2%)

Query: 2   ANRLQRGDRSRLL-LLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
           A R + G R  L  LLL +F  TL       IRYS+PEE  KGS VGN++KDLGL   ++
Sbjct: 6   AQRRRAGPRQVLFPLLLPLFYPTL----CEPIRYSIPEELAKGSVVGNLAKDLGLSVLDV 61

Query: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
           + R +R VS  K   F+V+ +SG L+   RIDRE++C+    C L +E +VE+ L I+ V
Sbjct: 62  SARELR-VSAEKLH-FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHV 119

Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
            V I D+ND+AP F++DE+ +++SE    G    L +A DPD+ +NSL  YQLSPN YFS
Sbjct: 120 IVVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFS 179

Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
           L  +   DG K PELVL+ +LDRE ++AH L+LTALDGGDP R G   IR++V+D ND+ 
Sbjct: 180 LVEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNP 239

Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
           P+F+Q VYRVS+ E++  GT +L V ATD DEGIN E+ YSF  +  KA  +F LD  TG
Sbjct: 240 PVFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTG 299

Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
            +  +  LDFE+   Y + I+ +D G L T   +++ VVD NDN+PEI ITS  + I+E+
Sbjct: 300 NILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMED 359

Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
           SPPG V+AL   +DQDSGENG+V C +   +PFK+  +  NYYKL+T   LDRE    YN
Sbjct: 360 SPPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYN 419

Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
           +T+ ATD+G PPLS+   + L++ D NDN PVF  S+Y  ++PENN  GASI  V+A DP
Sbjct: 420 VTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDP 479

Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
           D   N  V+YSL    ++   LSSYVS+++ +GV++A ++FD+EQ R  EL + ARD G 
Sbjct: 480 DFGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGS 539

Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
           P LS+NVSL + V D+NDNAP +LYPAL  DGS   +  PR+A+PGYLVTKVVAVD DSG
Sbjct: 540 PALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSG 599

Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
            NAWLSY +++ASEPGLF++G  TGEVR  RAL D+D+++Q L+VAV+D GQPPLSAT T
Sbjct: 600 HNAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATAT 659

Query: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720
           L +  ADS+ EVL D     + ++S+ +++  YLVVA+A +S +FL+ VI+ +ALRL + 
Sbjct: 660 LHLVFADSLQEVLPDFSDHPTPSDSQ-AEMQFYLVVALALISVLFLLAVILAIALRLRQS 718

Query: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780
                    E  L     S  VG          Y++   +  D        P+ N+    
Sbjct: 719 FSPTAGDCFESVLCS--KSGPVGPPNYSEGTLPYAYNFCVPGDQMN-----PEFNF---F 768

Query: 781 ISQESCEKSEPLLIAEDSAIILGKCDPT-------SNQQAPPNTDWRFSQAQRPGTSGSQ 833
            S + C  ++  L  +DS ++     P+         QQAPPNTDWRFSQAQRPGTSGSQ
Sbjct: 769 TSVDHCPATQDNL-NKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQ 827

Query: 834 NGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPD 893
           NGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPD
Sbjct: 828 NGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPD 887

Query: 894 YRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
           YRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 888 YRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929


>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 923

 Score =  933 bits (2412), Expect = 0.0
 Identities = 500/933 (53%), Positives = 637/933 (68%), Gaps = 23/933 (2%)

Query: 8   GDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRI 67
           G   RL +L    L         QIRY +PEE  KGS VGN++ DLG   +EL  R +R+
Sbjct: 9   GRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRV 68

Query: 68  VSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDI 127
            S  +   F V+  SG L+ + R+DREE+C    +C L  E + E+ L  Y V VEI DI
Sbjct: 69  SS--EKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDI 126

Query: 128 NDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRT 187
           ND+ P F ++  E+++SE A PG RF L  A D D+G+NSLQ Y+LS N  FSL ++ + 
Sbjct: 127 NDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQ 186

Query: 188 DGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSV 247
           DG+K PEL LE +LDRE+++ H L+LTALDGG P   G   +R+ V D ND+ P+F + V
Sbjct: 187 DGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDV 246

Query: 248 YRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGS 307
           YRVS+ EN+  GT VL V+ATD DEGIN E+ YSF     +  +IF L+S++GE+  +  
Sbjct: 247 YRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGEITTQKK 302

Query: 308 LDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVI 367
           LDFE+ + Y M ++G+DGGGL    T+ I + D NDN+PE+T  S +  ILEN+ PGT+I
Sbjct: 303 LDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLI 362

Query: 368 ALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATD 427
           AL+ + DQDSGENG+V+C +   +PFK+  +  N YKL+T   LDRE    YN+T+TATD
Sbjct: 363 ALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATD 422

Query: 428 QGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNAL 487
           +G PPLS+   V L++ D NDN PVF  +SY   +PENNP GASI  V A D D   N  
Sbjct: 423 RGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQ 482

Query: 488 VTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNV 547
           V+YS+    ++ + L+SYVS+++ +GV++A ++FDYEQ R  EL + ARD G P LS+NV
Sbjct: 483 VSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANV 542

Query: 548 SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSY 607
           SL + V D+NDNAP +LYPAL  DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY
Sbjct: 543 SLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSY 602

Query: 608 RLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD 667
            +L+ASEPGLF++G  TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL +  AD
Sbjct: 603 HVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFAD 662

Query: 668 SIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQ 727
           S+ EVL D+     + +   ++L  YLVVA+A +S +FL+ VI+ +ALRL R        
Sbjct: 663 SLQEVLPDITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWS 721

Query: 728 ASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCE 787
             + GL  + +   V  +  Q  L  YS+ +  +A + K+   F        L   E   
Sbjct: 722 CFQPGLC-VKSGPVVPPNYSQGTL-PYSYNL-CVAHTGKTEFNF--------LKCSEQLS 770

Query: 788 KSEPLLIAEDSAIILGKCDPTSNQ-----QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 842
             + +L  + S  +   C+ + +      QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 771 SGQDILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 830

Query: 843 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 902
           NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 831 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 890

Query: 903 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
           SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 891 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923


>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
           [Homo sapiens]
          Length = 930

 Score =  924 bits (2387), Expect = 0.0
 Identities = 501/937 (53%), Positives = 635/937 (67%), Gaps = 15/937 (1%)

Query: 2   ANRLQRGDRSRLL-LLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPREL 60
           A R + G R  L  LLL +F  TL    +  IRYS+PEE  KGS VGN++KDLGL   ++
Sbjct: 6   AQRRRAGPRQVLFPLLLPLFYPTL----SEPIRYSIPEELAKGSVVGNLAKDLGLSVLDV 61

Query: 61  AKRGVRIVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGV 120
           + R +R VS  K   F+V+  SG L+   RIDRE++C+    C L +E +VE+ L I+ V
Sbjct: 62  SARKLR-VSAEKLH-FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHV 119

Query: 121 EVEIIDINDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFS 180
            V I D+ND+AP F + E+ +++ E A  G R +L  A DPD+ +NS++ Y+++ N YFS
Sbjct: 120 IVVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFS 179

Query: 181 LQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHI 240
           L +R  +DG K PEL LE  LDRE++ +H L+LTALDGGDP R     I + V D ND+ 
Sbjct: 180 LMVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNP 239

Query: 241 PMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTG 300
           P+F++  YR+S+ EN+  G+ VL V ATD DEG+N E+ Y FR+       +F LD +TG
Sbjct: 240 PVFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTG 299

Query: 301 EVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILEN 360
            ++   S DFE    Y ME++ +DGGGL T   ++I ++D NDN+PEI ITS  + ILEN
Sbjct: 300 MIKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILEN 359

Query: 361 SPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN 420
           SPPG V+AL   +D D G NG+V C I   +PFK+  +  NYYKL+T   LDRE    YN
Sbjct: 360 SPPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYN 419

Query: 421 ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDP 480
           +T+ ATD+G PPLS+   + L VAD NDN PVF  +SY  ++ ENNP GASI  V+A DP
Sbjct: 420 VTIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDP 479

Query: 481 DSKQNALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGD 540
           D   N  ++YS+    ++ + +SSYVS+++ +GV++A ++FD+EQ R   L + ARD G 
Sbjct: 480 DLGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGS 539

Query: 541 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 600
           P LS+NVSL + V D+NDNAP +LYPAL  DGS   ++ PRSAEPGYLVTKVVAVD DSG
Sbjct: 540 PTLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSG 599

Query: 601 QNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVT 660
            NAWLSY +L+ASEPGLF++G  TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT T
Sbjct: 600 HNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATAT 659

Query: 661 LTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRW 720
           L +  AD++ E+L DL     L++ + ++L  YLVVA+A +S +FL+ VI+ +ALRL R 
Sbjct: 660 LHLVFADNLQEILPDLSDRPVLSDPQ-AELQFYLVVALALISVLFLLAVILAIALRLRRS 718

Query: 721 HKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTL 780
                      GL  + +   V  +  +  L  YS+ + +     K    F        L
Sbjct: 719 LSPATWDCFHPGLC-VKSGPVVPPNYSEGTL-PYSYNLCIAHTGTKE---FNFLKCSVPL 773

Query: 781 ISQES--CEKSEPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDT 838
            S E   C  S   LI       L     T   QAPPNTDWRFSQAQRPGTSGSQNGDDT
Sbjct: 774 HSNEDMVCSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDT 833

Query: 839 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 898
           GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV
Sbjct: 834 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 893

Query: 899 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
           YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 894 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930


>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
           [Homo sapiens]
          Length = 923

 Score =  921 bits (2381), Expect = 0.0
 Identities = 499/933 (53%), Positives = 637/933 (68%), Gaps = 23/933 (2%)

Query: 8   GDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRI 67
           G   RL +L    L         QIRY +PEE  KGS VGN++ DLG   +EL  R +R+
Sbjct: 9   GRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRV 68

Query: 68  VSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDI 127
            S  +   F V+  SG L+ + R+DREE+C    +C L  E + E+ L  Y V VEI DI
Sbjct: 69  SS--EKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDI 126

Query: 128 NDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRT 187
           ND+ P F ++  E+++SE A PG RF L +A D D+G N+LQ+YQLSP+++FSL  + ++
Sbjct: 127 NDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKS 186

Query: 188 DGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSV 247
           DG+K PE+VL+  LDREK+ ++ L LTALD G P       I V+V D ND+ P+F+Q V
Sbjct: 187 DGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDV 246

Query: 248 YRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEI--FQLDSQTGEVQVR 305
           YRVS+ EN+  GT VL V ATD DEG+N E+ +SF    S+AS+I  F L+S TGE+ V 
Sbjct: 247 YRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSF----SEASQITQFDLNSNTGEITVL 302

Query: 306 GSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGT 365
            +LDFE+ + Y + ++ +DGGG+    T+ + V+D NDNAPE+   S  N I+E++  GT
Sbjct: 303 NTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGT 362

Query: 366 VIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTA 425
            IALL V+D+DS  NG+V+C +   +PFK+  +  N YKL+T  VLDRE    YNIT+TA
Sbjct: 363 HIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTA 422

Query: 426 TDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQN 485
           TD+G PPLS+ + + L++ D NDN PVF  SSY  ++ ENNP GASI  V A DPD   N
Sbjct: 423 TDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPN 482

Query: 486 ALVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSS 545
             V+Y +    ++   LSSYVSI++ +GV++A ++FD+EQ R  EL + ARD G P LS+
Sbjct: 483 GQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSA 542

Query: 546 NVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWL 605
           NVSL + V D+NDNAP +LYPAL  DGS   ++ P +AEPGYLVTKVVAVD DSG NAWL
Sbjct: 543 NVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWL 602

Query: 606 SYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAV 665
           SY +L+ASEPGLF++G  TGEVRTARAL DRDA++Q L+VAV+D GQPPLSAT TL +  
Sbjct: 603 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVF 662

Query: 666 ADSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRL 725
           ADS+ EVL D+      ++ + ++L  YLVVA+A +S +FLV +I+ +ALRL R      
Sbjct: 663 ADSLQEVLPDITDRPDPSDLQ-AELQFYLVVALALISVLFLVAMILAIALRLRRSSSPAS 721

Query: 726 LQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQES 785
               + GL     S  V           YS+ +  +A + K+   F        L   E 
Sbjct: 722 WSCFQPGLC--VKSESVVPPNYSEGTLPYSYNL-CVAHTGKTEFNF--------LKCSEQ 770

Query: 786 CEKSEPLLIAEDSAIILGKCDP---TSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 842
               + +L  + S  +   C+    TS+QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 771 LSSGQDILCGDSSGALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 830

Query: 843 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 902
           NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 831 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 890

Query: 903 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
           SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 891 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923


>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
           [Homo sapiens]
          Length = 927

 Score =  916 bits (2368), Expect = 0.0
 Identities = 496/930 (53%), Positives = 634/930 (68%), Gaps = 31/930 (3%)

Query: 16  LLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKTQL 75
           LL +F G +    ++QIRY++PEE   GS VG ++KDLGL  REL  R +R+ +      
Sbjct: 19  LLSLFCGAI----SQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE---DY 71

Query: 76  FAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPSFQ 135
           F V+  SG L+  GRIDRE++C     C L  E + E+ + ++ V V I DINDNAP F 
Sbjct: 72  FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131

Query: 136 EDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPEL 195
              +++++ E A+PG +F+L +A+D DV  NSL+ Y ++PN YFSL  +   DG+K P L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191

Query: 196 VLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPEN 255
           +LE  LDRE +++H L+LTA+DGGDP   G   I + V D ND+ P+F+Q VYRVS+ EN
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251

Query: 256 ISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKYRF 315
           +  GT VL V ATD DEGIN E+ Y+F N     S +F L+  TG++   G+LDFE+   
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310

Query: 316 YEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQDQ 375
           Y + ++ +DGG       + I +VD NDNAPE+T  S  N I E+S  GTVIAL+ V+D+
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370

Query: 376 DSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPLSA 435
           DSG+NG V+C+    +PFKLE T  NYYKL+ +  L+RE    YN+T+ ATD+G P LS+
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430

Query: 436 ETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDD 495
            T + L+++D NDN PVF  +SY  ++ ENNP GASI  V+A DPD   N  V+YS+   
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490

Query: 496 TVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLD 555
            ++   L SYVS++  +GV++A ++FD+EQ R  EL + ARD G P LS+NVSL + V D
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550

Query: 556 QNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEP 615
            NDNAP +LYPAL  DGS   ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610

Query: 616 GLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLAD 675
           GLF++G  TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL +  ADS+ EVL D
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670

Query: 676 LGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGLA- 734
           L      ++ +T +L  YLVVA+A +S +FL+ VI+ +ALRL R          + GL  
Sbjct: 671 LSDRPEPSDPQT-ELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCS 729

Query: 735 ----GMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCEKSE 790
               G+P +H  G          YS+ + + + S K+   F   N    +   +     +
Sbjct: 730 KSGPGVPPNHSEGT-------LPYSYNLCIASHSAKTE--FNSLNLTPEMAPPQDLLCDD 780

Query: 791 PLLIA----EDSAIILGKCDPT-SNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 845
           P ++     ED  I     DP+ S+ QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 781 PSMVVCASNEDHKIAY---DPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 837

Query: 846 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 905
           FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 838 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 897

Query: 906 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
           TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 898 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 927


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,297,179
Number of Sequences: 37866
Number of extensions: 1591320
Number of successful extensions: 10457
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 3283
Number of HSP's gapped (non-prelim): 597
length of query: 935
length of database: 18,247,518
effective HSP length: 112
effective length of query: 823
effective length of database: 14,006,526
effective search space: 11527370898
effective search space used: 11527370898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.

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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.