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Search of human proteins with 11128037
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11128037 protocadherin gamma subfamily B, 1 isoform 1
precursor [Homo sapiens]
(927 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 1838 0.0
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 1584 0.0
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 1360 0.0
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 1326 0.0
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 1320 0.0
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 1288 0.0
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs... 1278 0.0
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 1270 0.0
gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs... 1112 0.0
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs... 1080 0.0
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 1073 0.0
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 1038 0.0
gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precurs... 1028 0.0
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 1019 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 925 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 921 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 921 0.0
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 917 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 916 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 913 0.0
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 909 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 908 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 903 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 902 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 896 0.0
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs... 888 0.0
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs... 846 0.0
gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precurs... 823 0.0
gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precurs... 819 0.0
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs... 679 0.0
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 1838 bits (4762), Expect = 0.0
Identities = 927/927 (100%), Positives = 927/927 (100%)
Query: 1 MQRAREAEMMKSQVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELP 60
MQRAREAEMMKSQVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELP
Sbjct: 1 MQRAREAEMMKSQVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELP 60
Query: 61 TRKLRVSAEDYFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVI 120
TRKLRVSAEDYFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVI
Sbjct: 61 TRKLRVSAEDYFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVI 120
Query: 121 QDINDNAPRFVAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTK 180
QDINDNAPRFVAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTK
Sbjct: 121 QDINDNAPRFVAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTK 180
Query: 181 ESPDGSKYPVLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFS 240
ESPDGSKYPVLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFS
Sbjct: 181 ESPDGSKYPVLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFS 240
Query: 241 QEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTN 300
QEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTN
Sbjct: 241 QEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTN 300
Query: 301 GTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGT 360
GTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGT
Sbjct: 301 GTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGT 360
Query: 361 VIALIKVRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIA 420
VIALIKVRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIA
Sbjct: 361 VIALIKVRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIA 420
Query: 421 TDKGKPALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPN 480
TDKGKPALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPN
Sbjct: 421 TDKGKPALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPN 480
Query: 481 GRVSYSILASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSA 540
GRVSYSILASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSA
Sbjct: 481 GRVSYSILASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSA 540
Query: 541 NVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL 600
NVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL
Sbjct: 541 NVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL 600
Query: 601 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIF 660
SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIF
Sbjct: 601 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIF 660
Query: 661 ADSLQEVLPDLSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTE 720
ADSLQEVLPDLSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTE
Sbjct: 661 ADSLQEVLPDLSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTE 720
Query: 721 GCFQTGLCSKSGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDD 780
GCFQTGLCSKSGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDD
Sbjct: 721 GCFQTGLCSKSGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDD 780
Query: 781 PSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 840
PSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT
Sbjct: 781 PSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 840
Query: 841 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 900
EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT
Sbjct: 841 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 900
Query: 901 NAAGKRDGKAPAGGNGNKKKSGKKEKK 927
NAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 NAAGKRDGKAPAGGNGNKKKSGKKEKK 927
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 1584 bits (4102), Expect = 0.0
Identities = 803/803 (100%), Positives = 803/803 (100%)
Query: 1 MQRAREAEMMKSQVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELP 60
MQRAREAEMMKSQVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELP
Sbjct: 1 MQRAREAEMMKSQVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELP 60
Query: 61 TRKLRVSAEDYFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVI 120
TRKLRVSAEDYFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVI
Sbjct: 61 TRKLRVSAEDYFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVI 120
Query: 121 QDINDNAPRFVAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTK 180
QDINDNAPRFVAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTK
Sbjct: 121 QDINDNAPRFVAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTK 180
Query: 181 ESPDGSKYPVLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFS 240
ESPDGSKYPVLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFS
Sbjct: 181 ESPDGSKYPVLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFS 240
Query: 241 QEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTN 300
QEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTN
Sbjct: 241 QEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTN 300
Query: 301 GTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGT 360
GTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGT
Sbjct: 301 GTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGT 360
Query: 361 VIALIKVRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIA 420
VIALIKVRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIA
Sbjct: 361 VIALIKVRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIA 420
Query: 421 TDKGKPALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPN 480
TDKGKPALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPN
Sbjct: 421 TDKGKPALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPN 480
Query: 481 GRVSYSILASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSA 540
GRVSYSILASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSA
Sbjct: 481 GRVSYSILASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSA 540
Query: 541 NVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL 600
NVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL
Sbjct: 541 NVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL 600
Query: 601 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIF 660
SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIF
Sbjct: 601 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIF 660
Query: 661 ADSLQEVLPDLSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTE 720
ADSLQEVLPDLSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTE
Sbjct: 661 ADSLQEVLPDLSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTE 720
Query: 721 GCFQTGLCSKSGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDD 780
GCFQTGLCSKSGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDD
Sbjct: 721 GCFQTGLCSKSGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDD 780
Query: 781 PSMVVCASNEDHKIAYDPSLSSH 803
PSMVVCASNEDHKIAYDPSLSSH
Sbjct: 781 PSMVVCASNEDHKIAYDPSLSSH 803
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 1360 bits (3521), Expect = 0.0
Identities = 702/920 (76%), Positives = 776/920 (84%), Gaps = 8/920 (0%)
Query: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE-DY 71
QVL PFLLSLF GA+ QIRY+IPEELA S VG LAKDLGLSVR+LP RKLRVSAE +Y
Sbjct: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
Query: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
F V+ ESGDLLV+ RIDRE+ICG++ C L+F+TVAENP+N+F++ V++QDINDN P F
Sbjct: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
Query: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
I+L+I ES PG F LD A D+DV NSL+ Y +N N+YF L+ K++PDG KYP L
Sbjct: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
Query: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
+L+ LDRE S H+L+LTA+DGGDPP SGTT I I+VTDANDN PVFSQ+VYRV+L+E+
Sbjct: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
Query: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310
VP G VL+V ATD+DEGINAEITY+F N FNLN TG+ITT LDFE S
Sbjct: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
Query: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Y LS+EAKD G AHC++Q+EI+D+ND APEV S S +PEDS GTVIALIK RD+
Sbjct: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
Query: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
DSG+NG V C F L+S+SKNYYKLV GAL+RE+ +YN+TI ATD GKP LSS
Sbjct: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
Query: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
+TLHISD+NDNAPVF Q SY+VHV+ENNPPGASIAQ+SASDPDLGP+G+VSYSI+AS
Sbjct: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
Query: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
DL+PRE+LSYVSVS QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
Query: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
Query: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
Query: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
LSDR EPSDPQ +LQFYLVVALALISVLF LAVILAI+LRLR SS D CFQ GL SK
Sbjct: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
Query: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790
GPGV PN+SEGTLPYSYNLC+AS SAKTEFN LN+TPE+ P QDL+CD+ S N
Sbjct: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASW---EQNT 791
Query: 791 DHKIAYDPSLSS---HQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI 847
+H A P S QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI
Sbjct: 792 NHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI 851
Query: 848 LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD 907
LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD
Sbjct: 852 LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD 911
Query: 908 GKAPAGGNGNKKKSGKKEKK 927
GKAPAGGNGNKKKSGKKEKK
Sbjct: 912 GKAPAGGNGNKKKSGKKEKK 931
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1326 bits (3432), Expect = 0.0
Identities = 685/915 (74%), Positives = 763/915 (83%), Gaps = 8/915 (0%)
Query: 14 VLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-YF 72
VLF FLLSLFC A+ +QIRY IPEE+ GS VG LA DLG SV+ELPTRKLRVS+E YF
Sbjct: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKPYF 75
Query: 73 NVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVA 132
VS ESG+LLV+ R+DRE+ICG+K CALEFE VAENP+N +HV V I+DIND+ P+F
Sbjct: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
Query: 133 KGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLL 192
+L+I ESA PG +F L+ A+DAD+ NSL+ Y ++ N FSL KE DGSKYP L
Sbjct: 136 NSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELA 195
Query: 193 LEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENV 252
LEK LDRE QS HRL+LTA+DGG PPLSGTT + I+VTDANDN PVF+++VYRVSL+ENV
Sbjct: 196 LEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENV 255
Query: 253 PWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYV 312
P GT+VL+V ATDQDEGIN+EITY+F + +F+LN +G+ITT LDFEET Y
Sbjct: 256 PPGTTVLQVSATDQDEGINSEITYSFYRTG---QIFSLNSKSGEITTQKKLDFEETKEYS 312
Query: 313 LSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDS 372
+ VE +DGG A C V+I I DENDN+PEVTF S I E++ GT+IALIK+ D+DS
Sbjct: 313 MVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDS 372
Query: 373 GQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRT 432
G+NG V C Q EVPFK+ S+SKN YKLV G L+REQT +YNVTI ATD+GKP LSS
Sbjct: 373 GENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSI 432
Query: 433 SITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDL 492
S+ LHI D+NDNAPVFHQASY+V V ENNPPGASIAQV ASD DLG NG+VSYSI+ASDL
Sbjct: 433 SVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDL 492
Query: 493 EPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLN 552
EP L SYVS+S QSGVVFAQRAFD+EQLR FELTLQARDQGSPALSANVSLRVLVGD N
Sbjct: 493 EPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRN 552
Query: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL
Sbjct: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
Query: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLS 672
FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD++
Sbjct: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDIT 672
Query: 673 DRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSG 732
DRP PSDPQ ELQFYLVVALALISVLFLLAVILA+ALRLRRSSS CFQ GLC KSG
Sbjct: 673 DRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCVKSG 732
Query: 733 PGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNEDH 792
P VPPN+S+GTLPYSYNLC+A H+ KTEFN L + +++ QD+LC D S +
Sbjct: 733 PVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSS 791
Query: 793 KIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASAS 852
+ P L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASAS
Sbjct: 792 ESTSHPEL---QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASAS 848
Query: 853 EAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA 912
EAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA
Sbjct: 849 EAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA 908
Query: 913 GGNGNKKKSGKKEKK 927
GGNGNKKKSGKKEKK
Sbjct: 909 GGNGNKKKSGKKEKK 923
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1320 bits (3416), Expect = 0.0
Identities = 678/919 (73%), Positives = 767/919 (83%), Gaps = 16/919 (1%)
Query: 14 VLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-YF 72
VLF FLLSLFC A+ +QIRY IPEE+ GS VG LA DLG SV+ELPTRKLRVS+E YF
Sbjct: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKPYF 75
Query: 73 NVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVA 132
VS ESG+LLV+ R+DRE+ICG+K CALEFE VAENP+N +HV V I+DIND+ P+F
Sbjct: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
Query: 133 KGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLL 192
+L+I ESA PG +F L SA DAD+ N+L+ Y ++P+ +FSL KE DGSKYP ++
Sbjct: 136 NSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEMV 195
Query: 193 LEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENV 252
L+ PLDRE Q S+ L LTA+D G PPLS T I + VTDANDNAPVFSQ+VYRVSL ENV
Sbjct: 196 LKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSENV 255
Query: 253 PWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYV 312
GT+VL+V ATDQDEG+NAEIT++F + T F+LN NTG+IT TLDFEE Y
Sbjct: 256 YPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ-FDLNSNTGEITVLNTLDFEEVKEYS 314
Query: 313 LSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDS 372
+ +EA+DGG A C V++E++DENDNAPEV F S N I ED++LGT IAL+KVRDKDS
Sbjct: 315 IVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRDKDS 374
Query: 373 GQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRT 432
NG VTC + +VPFK+ ++S+N YKLV L+REQ +YN+T+ ATD+GKP LSS +
Sbjct: 375 RHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLSSSS 434
Query: 433 SITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDL 492
SITLHI D+NDNAPVF Q+SY+VHV+ENNPPGASI+QV ASDPDLGPNG+VSY I+ASDL
Sbjct: 435 SITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMASDL 494
Query: 493 EPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLN 552
E REL SYVS+S +SGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV D N
Sbjct: 495 EQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVDDRN 554
Query: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
DNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL
Sbjct: 555 DNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 614
Query: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLS 672
FSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD++
Sbjct: 615 FSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDIT 674
Query: 673 DRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSG 732
DRP+PSD Q ELQFYLVVALALISVLFL+A+ILAIALRLRRSSS + CFQ GLC KS
Sbjct: 675 DRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGLCVKSE 734
Query: 733 PGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPS---MVVCASN 789
VPPN+SEGTLPYSYNLC+A H+ KTEFN L + +++ QD+LC D S +C S+
Sbjct: 735 SVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSS 793
Query: 790 EDHKIAYDPSLSSH-QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMIL 848
E L+SH QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMIL
Sbjct: 794 E---------LTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMIL 844
Query: 849 ASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG 908
ASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG
Sbjct: 845 ASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG 904
Query: 909 KAPAGGNGNKKKSGKKEKK 927
KAPAGGNGNKKKSGKKEKK
Sbjct: 905 KAPAGGNGNKKKSGKKEKK 923
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 1288 bits (3333), Expect = 0.0
Identities = 666/917 (72%), Positives = 742/917 (80%), Gaps = 3/917 (0%)
Query: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
QVLFP LL LF +S+ IRY+IPEELA GS VG LAKDLGLSV ++ RKLRVSAE +
Sbjct: 15 QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
Query: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
F+V ESGDLLV RIDRE+IC + C L+ E V ENP+N+FHV+VVI+D+ND+AP+F
Sbjct: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
Query: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
K I LEI ESA G + SLD A D D+ NS+K Y IN N YFSL + + DG KYP L
Sbjct: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
Query: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
LEK LDRE Q SH LILTA+DGGDPP S T HI I V D NDN PVFS++ YR+SL EN
Sbjct: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
Query: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310
+P G+ VL+V ATDQDEG+NAEI Y F ++ ST +F+L+ TG I N + DFE+ R
Sbjct: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
Query: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Y + VEAKDGG + C V IEI+DENDN+PE+ S S+QI E+S G V+AL K RD
Sbjct: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
Query: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
D G NG V C + ++PFK+ S+S NYYKLV GAL+REQT +YNVTI+ATD+GKP LSS
Sbjct: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
Query: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
SITL+++DINDNAPVF Q SYVVHV+ENNPPGASIAQVSASDPDLG NG +SYSI+AS
Sbjct: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
Query: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
DLEP + SYVSVS QSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
Query: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
Query: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
Query: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
LSDRP SDPQ ELQFYLVVALALISVLFLLAVILAIALRLRRS S T CF GLC K
Sbjct: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734
Query: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790
SGP VPPN+SEGTLPYSYNLCIA H+ EFN L + + +D++C + +
Sbjct: 735 SGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDMVCSVSPGALIPPHG 793
Query: 791 DHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 850
+ P + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS
Sbjct: 794 GEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 853
Query: 851 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 910
ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
Sbjct: 854 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 913
Query: 911 PAGGNGNKKKSGKKEKK 927
PAGGNGNKKKSGKKEKK
Sbjct: 914 PAGGNGNKKKSGKKEKK 930
>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1278 bits (3306), Expect = 0.0
Identities = 662/917 (72%), Positives = 742/917 (80%), Gaps = 4/917 (0%)
Query: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
++LF FLLSL +S+ IRY IPEEL GS VG LAKDLG V +LPTR LRV AE +
Sbjct: 15 RMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKKF 74
Query: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
F VS E+G+LLV+ RIDRE+ICG+K C LEFE VAE P+N FHV V+IQDINDN P F
Sbjct: 75 FTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFS 134
Query: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
+LEI E AL G F+L+SAQD DV NSL+ Y ++P+ +FSL KE+ DGS+YP L
Sbjct: 135 QNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPEL 194
Query: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
+L+ PLDRE Q H L+LTA+DGG+P S TT I + V DANDN PVF+Q++YRV++ EN
Sbjct: 195 VLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAEN 254
Query: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPIST-SLFNLNPNTGDITTNGTLDFEETSR 310
+P G+SVL+VMA D DEGINAEI YAF+N LF L+ TG++TT G LDFEE
Sbjct: 255 LPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERDS 314
Query: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Y + VEAKDGG HTA+C VQI+I DENDNAPE+T S S I ED++LGT +ALIK D
Sbjct: 315 YTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHDL 374
Query: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
DSG NG + C + PFK+ +KN Y+LV GAL+REQ +YNVTI ATDKG P LSS
Sbjct: 375 DSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLSS 434
Query: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
+ITLHI D+NDN PVFHQASY VHV+ENNPPGASIA V ASDPDLGPNG VSY I+AS
Sbjct: 435 SKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVAS 494
Query: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
DLEPREL SYVSVS +SGVVFAQRAFDHEQLRAFELTLQARDQGSP LSANVSLRVLV D
Sbjct: 495 DLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVDD 554
Query: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+NAWLSYH++QASEP
Sbjct: 555 RNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASEP 614
Query: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
GLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT LHLIFADSLQE+ PD
Sbjct: 615 GLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQPD 674
Query: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
LSDRP PSDPQ ELQF+LVVALALISVLFLLAVILAI+LRLR SS TEG FQ G+C K
Sbjct: 675 LSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSRPATEGYFQPGVCFK 734
Query: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790
+ PGV P +SE TLPYSYN C ASHS+ TEF LN+ E A PQDLLCD+ S SN+
Sbjct: 735 TVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLCDEASWF--ESND 792
Query: 791 DHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 850
+ ++ + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS
Sbjct: 793 NPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 852
Query: 851 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 910
ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
Sbjct: 853 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 912
Query: 911 PAGGNGNKKKSGKKEKK 927
PAGGNGNKKKSGKKEKK
Sbjct: 913 PAGGNGNKKKSGKKEKK 929
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1270 bits (3287), Expect = 0.0
Identities = 653/917 (71%), Positives = 740/917 (80%), Gaps = 4/917 (0%)
Query: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
QVLFP LL LF + + IRY+IPEELA GS VG LAKDLGLSV ++ R+LRVSAE +
Sbjct: 15 QVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH 74
Query: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
F+V +SGDLLV RIDRE+IC + C L+ E V ENP+N+FHV+VVI+D+ND+AP+F
Sbjct: 75 FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFR 134
Query: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
I+LEI ES G+ L+SA+D D+ NSL Y ++PN+YFSL K++PDG KYP L
Sbjct: 135 KDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPEL 194
Query: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
+L+K LDRE QS+H L+LTA+DGGDPP SGT I I V DANDN PVFSQ+VYRVSL+E+
Sbjct: 195 VLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254
Query: 252 VPWGTSVLRVMATDQDEGINAEITYAFLN-SPISTSLFNLNPNTGDITTNGTLDFEETSR 310
VP GTS+LRV ATDQDEGIN+EITY+F + + +F+L+ TG+I T LDFEE R
Sbjct: 255 VPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVER 314
Query: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Y +++EAKD G + C V +E+VDENDN+PE+ S S+QI EDS G V+AL K RD+
Sbjct: 315 YTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQ 374
Query: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
DSG+NG V C VPFK+ S+S NYYKLV AL+REQT +YNVTI ATD+GKP LSS
Sbjct: 375 DSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSS 434
Query: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
+ITLHI+D+NDNAPVF Q++Y+VHV ENN PGASIAQVSASDPD G NGRVSYS++AS
Sbjct: 435 SKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIAS 494
Query: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
DLE R L SYVSVS QSGVVFAQRAFDHEQLR FELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 495 DLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGD 554
Query: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
NDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGHNAWLSYHV+QASEP
Sbjct: 555 RNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEP 614
Query: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
GLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD
Sbjct: 615 GLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 674
Query: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
SD P PSD Q E+QFYLVVALALISVLFLLAVILAIALRLR+S S CF++ LCSK
Sbjct: 675 FSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCSK 734
Query: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790
SGP PPN+SEGTLPY+YN C+ EFN QD L D ++ AS
Sbjct: 735 SGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDNLNKDSMLL--ASIL 792
Query: 791 DHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 850
+ D + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS
Sbjct: 793 TPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 852
Query: 851 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 910
ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
Sbjct: 853 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 912
Query: 911 PAGGNGNKKKSGKKEKK 927
PAGGNGNKKKSGKKEKK
Sbjct: 913 PAGGNGNKKKSGKKEKK 929
>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
[Homo sapiens]
Length = 811
Score = 1112 bits (2876), Expect = 0.0
Identities = 578/791 (73%), Positives = 652/791 (82%), Gaps = 5/791 (0%)
Query: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE-DY 71
QVL PFLLSLF GA+ QIRY+IPEELA S VG LAKDLGLSVR+LP RKLRVSAE +Y
Sbjct: 15 QVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKEY 74
Query: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
F V+ ESGDLLV+ RIDRE+ICG++ C L+F+TVAENP+N+F++ V++QDINDN P F
Sbjct: 75 FTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFK 134
Query: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
I+L+I ES PG F LD A D+DV NSL+ Y +N N+YF L+ K++PDG KYP L
Sbjct: 135 QTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPEL 194
Query: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
+L+ LDRE S H+L+LTA+DGGDPP SGTT I I+VTDANDN PVFSQ+VYRV+L+E+
Sbjct: 195 ILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLRED 254
Query: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310
VP G VL+V ATD+DEGINAEITY+F N FNLN TG+ITT LDFE S
Sbjct: 255 VPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASS 314
Query: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Y LS+EAKD G AHC++Q+EI+D+ND APEV S S +PEDS GTVIALIK RD+
Sbjct: 315 YTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDR 374
Query: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
DSG+NG V C F L+S+SKNYYKLV GAL+RE+ +YN+TI ATD GKP LSS
Sbjct: 375 DSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSS 434
Query: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
+TLHISD+NDNAPVF Q SY+VHV+ENNPPGASIAQ+SASDPDLGP+G+VSYSI+AS
Sbjct: 435 SIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVAS 494
Query: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
DL+PRE+LSYVSVS QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 495 DLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 554
Query: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 555 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
Query: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 674
Query: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
LSDR EPSDPQ +LQFYLVVALALISVLF LAVILAI+LRLR SS D CFQ GL SK
Sbjct: 675 LSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSK 734
Query: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790
GPGV PN+SEGTLPYSYNLC+AS SAKTEFN LN+TPE+ P QDL+CD+ S N
Sbjct: 735 PGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASW---EQNT 791
Query: 791 DHKIAYDPSLS 801
+H A P S
Sbjct: 792 NHGAAGVPFAS 802
>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 1080 bits (2792), Expect = 0.0
Identities = 562/781 (71%), Positives = 640/781 (81%), Gaps = 8/781 (1%)
Query: 14 VLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-YF 72
VLF FLLSLFC A+ +QIRY IPEE+ GS VG LA DLG SV+ELPTRKLRVS+E YF
Sbjct: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKPYF 75
Query: 73 NVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVA 132
VS ESG+LLV+ R+DRE+ICG+K CALEFE VAENP+N +HV V I+DIND+ P+F
Sbjct: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
Query: 133 KGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLL 192
+L+I ESA PG +F L+ A+DAD+ NSL+ Y ++ N FSL KE DGSKYP L
Sbjct: 136 NSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELA 195
Query: 193 LEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENV 252
LEK LDRE QS HRL+LTA+DGG PPLSGTT + I+VTDANDN PVF+++VYRVSL+ENV
Sbjct: 196 LEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENV 255
Query: 253 PWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYV 312
P GT+VL+V ATDQDEGIN+EITY+F + +F+LN +G+ITT LDFEET Y
Sbjct: 256 PPGTTVLQVSATDQDEGINSEITYSFYRTG---QIFSLNSKSGEITTQKKLDFEETKEYS 312
Query: 313 LSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDS 372
+ VE +DGG A C V+I I DENDN+PEVTF S I E++ GT+IALIK+ D+DS
Sbjct: 313 MVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDS 372
Query: 373 GQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRT 432
G+NG V C Q EVPFK+ S+SKN YKLV G L+REQT +YNVTI ATD+GKP LSS
Sbjct: 373 GENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSI 432
Query: 433 SITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDL 492
S+ LHI D+NDNAPVFHQASY+V V ENNPPGASIAQV ASD DLG NG+VSYSI+ASDL
Sbjct: 433 SVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDL 492
Query: 493 EPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLN 552
EP L SYVS+S QSGVVFAQRAFD+EQLR FELTLQARDQGSPALSANVSLRVLVGD N
Sbjct: 493 EPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRN 552
Query: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL
Sbjct: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
Query: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLS 672
FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD++
Sbjct: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDIT 672
Query: 673 DRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSG 732
DRP PSDPQ ELQFYLVVALALISVLFLLAVILA+ALRLRRSSS CFQ GLC KSG
Sbjct: 673 DRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCVKSG 732
Query: 733 PGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPS---MVVCASN 789
P VPPN+S+GTLPYSYNLC+A H+ KTEFN L + +++ QD+LC D S +C S+
Sbjct: 733 PVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSS 791
Query: 790 E 790
E
Sbjct: 792 E 792
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 1073 bits (2774), Expect = 0.0
Identities = 552/789 (69%), Positives = 644/789 (81%), Gaps = 8/789 (1%)
Query: 14 VLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-YF 72
VLF FLLSLFC A+ +QIRY IPEE+ GS VG LA DLG SV+ELPTRKLRVS+E YF
Sbjct: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKPYF 75
Query: 73 NVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVA 132
VS ESG+LLV+ R+DRE+ICG+K CALEFE VAENP+N +HV V I+DIND+ P+F
Sbjct: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
Query: 133 KGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLL 192
+L+I ESA PG +F L SA DAD+ N+L+ Y ++P+ +FSL KE DGSKYP ++
Sbjct: 136 NSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEMV 195
Query: 193 LEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENV 252
L+ PLDRE Q S+ L LTA+D G PPLS T I + VTDANDNAPVFSQ+VYRVSL ENV
Sbjct: 196 LKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSENV 255
Query: 253 PWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYV 312
GT+VL+V ATDQDEG+NAEIT++F + T F+LN NTG+IT TLDFEE Y
Sbjct: 256 YPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ-FDLNSNTGEITVLNTLDFEEVKEYS 314
Query: 313 LSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDS 372
+ +EA+DGG A C V++E++DENDNAPEV F S N I ED++LGT IAL+KVRDKDS
Sbjct: 315 IVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRDKDS 374
Query: 373 GQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRT 432
NG VTC + +VPFK+ ++S+N YKLV L+REQ +YN+T+ ATD+GKP LSS +
Sbjct: 375 RHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLSSSS 434
Query: 433 SITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDL 492
SITLHI D+NDNAPVF Q+SY+VHV+ENNPPGASI+QV ASDPDLGPNG+VSY I+ASDL
Sbjct: 435 SITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMASDL 494
Query: 493 EPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLN 552
E REL SYVS+S +SGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV D N
Sbjct: 495 EQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVDDRN 554
Query: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
DNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL
Sbjct: 555 DNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 614
Query: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLS 672
FSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD++
Sbjct: 615 FSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDIT 674
Query: 673 DRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSG 732
DRP+PSD Q ELQFYLVVALALISVLFL+A+ILAIALRLRRSSS + CFQ GLC KS
Sbjct: 675 DRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGLCVKSE 734
Query: 733 PGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPS---MVVCASN 789
VPPN+SEGTLPYSYNLC+A H+ KTEFN L + +++ QD+LC D S +C S+
Sbjct: 735 SVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSS 793
Query: 790 E--DHKIAY 796
E H++++
Sbjct: 794 ELTSHQVSF 802
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 1038 bits (2683), Expect = 0.0
Identities = 541/768 (70%), Positives = 613/768 (79%), Gaps = 3/768 (0%)
Query: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
QVLFP LL LF +S+ IRY+IPEELA GS VG LAKDLGLSV ++ RKLRVSAE +
Sbjct: 15 QVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAEKLH 74
Query: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
F+V ESGDLLV RIDRE+IC + C L+ E V ENP+N+FHV+VVI+D+ND+AP+F
Sbjct: 75 FSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFD 134
Query: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
K I LEI ESA G + SLD A D D+ NS+K Y IN N YFSL + + DG KYP L
Sbjct: 135 KKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPEL 194
Query: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
LEK LDRE Q SH LILTA+DGGDPP S T HI I V D NDN PVFS++ YR+SL EN
Sbjct: 195 SLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSEN 254
Query: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310
+P G+ VL+V ATDQDEG+NAEI Y F ++ ST +F+L+ TG I N + DFE+ R
Sbjct: 255 LPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVER 314
Query: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Y + VEAKDGG + C V IEI+DENDN+PE+ S S+QI E+S G V+AL K RD
Sbjct: 315 YTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRDL 374
Query: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
D G NG V C + ++PFK+ S+S NYYKLV GAL+REQT +YNVTI+ATD+GKP LSS
Sbjct: 375 DFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLSS 434
Query: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
SITL+++DINDNAPVF Q SYVVHV+ENNPPGASIAQVSASDPDLG NG +SYSI+AS
Sbjct: 435 SRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVAS 494
Query: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
DLEP + SYVSVS QSGVVFAQRAFDHEQLRAF LTLQARD GSP LSANVSLRVLVGD
Sbjct: 495 DLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGD 554
Query: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
NDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP
Sbjct: 555 RNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 614
Query: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FAD+LQE+LPD
Sbjct: 615 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPD 674
Query: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
LSDRP SDPQ ELQFYLVVALALISVLFLLAVILAIALRLRRS S T CF GLC K
Sbjct: 675 LSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCVK 734
Query: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLC 778
SGP VPPN+SEGTLPYSYNLCIA H+ EFN L + + +D++C
Sbjct: 735 SGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDMVC 781
>gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precursor
[Homo sapiens]
Length = 814
Score = 1028 bits (2658), Expect = 0.0
Identities = 536/772 (69%), Positives = 611/772 (79%), Gaps = 2/772 (0%)
Query: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
++LF FLLSL +S+ IRY IPEEL GS VG LAKDLG V +LPTR LRV AE +
Sbjct: 15 RMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKKF 74
Query: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
F VS E+G+LLV+ RIDRE+ICG+K C LEFE VAE P+N FHV V+IQDINDN P F
Sbjct: 75 FTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFS 134
Query: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
+LEI E AL G F+L+SAQD DV NSL+ Y ++P+ +FSL KE+ DGS+YP L
Sbjct: 135 QNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPEL 194
Query: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
+L+ PLDRE Q H L+LTA+DGG+P S TT I + V DANDN PVF+Q++YRV++ EN
Sbjct: 195 VLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAEN 254
Query: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPIST-SLFNLNPNTGDITTNGTLDFEETSR 310
+P G+SVL+VMA D DEGINAEI YAF+N LF L+ TG++TT G LDFEE
Sbjct: 255 LPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERDS 314
Query: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Y + VEAKDGG HTA+C VQI+I DENDNAPE+T S S I ED++LGT +ALIK D
Sbjct: 315 YTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHDL 374
Query: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
DSG NG + C + PFK+ +KN Y+LV GAL+REQ +YNVTI ATDKG P LSS
Sbjct: 375 DSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLSS 434
Query: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
+ITLHI D+NDN PVFHQASY VHV+ENNPPGASIA V ASDPDLGPNG VSY I+AS
Sbjct: 435 SKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVAS 494
Query: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
DLEPREL SYVSVS +SGVVFAQRAFDHEQLRAFELTLQARDQGSP LSANVSLRVLV D
Sbjct: 495 DLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVDD 554
Query: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+NAWLSYH++QASEP
Sbjct: 555 RNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASEP 614
Query: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
GLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT LHLIFADSLQE+ PD
Sbjct: 615 GLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQPD 674
Query: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
LSDRP PSDPQ ELQF+LVVALALISVLFLLAVILAI+LRLR SS TEG FQ G+C K
Sbjct: 675 LSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSRPATEGYFQPGVCFK 734
Query: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPS 782
+ PGV P +SE TLPYSYN C ASHS+ TEF LN+ E A PQDLLCD+ S
Sbjct: 735 TVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLCDEAS 786
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 1019 bits (2636), Expect = 0.0
Identities = 526/774 (67%), Positives = 611/774 (78%), Gaps = 2/774 (0%)
Query: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
QVLFP LL LF + + IRY+IPEELA GS VG LAKDLGLSV ++ R+LRVSAE +
Sbjct: 15 QVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAEKLH 74
Query: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
F+V +SGDLLV RIDRE+IC + C L+ E V ENP+N+FHV+VVI+D+ND+AP+F
Sbjct: 75 FSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFR 134
Query: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
I+LEI ES G+ L+SA+D D+ NSL Y ++PN+YFSL K++PDG KYP L
Sbjct: 135 KDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPEL 194
Query: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
+L+K LDRE QS+H L+LTA+DGGDPP SGT I I V DANDN PVFSQ+VYRVSL+E+
Sbjct: 195 VLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLRED 254
Query: 252 VPWGTSVLRVMATDQDEGINAEITYAFLN-SPISTSLFNLNPNTGDITTNGTLDFEETSR 310
VP GTS+LRV ATDQDEGIN+EITY+F + + +F+L+ TG+I T LDFEE R
Sbjct: 255 VPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGNILTQQPLDFEEVER 314
Query: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Y +++EAKD G + C V +E+VDENDN+PE+ S S+QI EDS G V+AL K RD+
Sbjct: 315 YTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRDQ 374
Query: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
DSG+NG V C VPFK+ S+S NYYKLV AL+REQT +YNVTI ATD+GKP LSS
Sbjct: 375 DSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLSS 434
Query: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
+ITLHI+D+NDNAPVF Q++Y+VHV ENN PGASIAQVSASDPD G NGRVSYS++AS
Sbjct: 435 SKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIAS 494
Query: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
DLE R L SYVSVS QSGVVFAQRAFDHEQLR FELTLQARDQGSPALSANVSLRVLVGD
Sbjct: 495 DLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGD 554
Query: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
NDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGHNAWLSYHV+QASEP
Sbjct: 555 RNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEP 614
Query: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
GLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD
Sbjct: 615 GLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 674
Query: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
SD P PSD Q E+QFYLVVALALISVLFLLAVILAIALRLR+S S CF++ LCSK
Sbjct: 675 FSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLCSK 734
Query: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMV 784
SGP PPN+SEGTLPY+YN C+ EFN QD L D ++
Sbjct: 735 SGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDNLNKDSMLL 788
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 925 bits (2391), Expect = 0.0
Identities = 503/936 (53%), Positives = 632/936 (67%), Gaps = 37/936 (3%)
Query: 13 QVLFPF-LLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE-- 69
++L PF LL C S QIRY++PEEL GS VG +AKDLGL +EL R +R+ +
Sbjct: 12 ELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGR 71
Query: 70 -DYFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAP 128
F ++ SG L+ GRIDRE++C + C + F + EN M ++ V V I DINDN P
Sbjct: 72 TQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFP 131
Query: 129 RFVAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKY 188
RF + + +++ E+A G + L A+DADV NSL+ Y ++ N +FSL DG KY
Sbjct: 132 RFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKY 191
Query: 189 PVLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSL 248
P L+LE+PLDRE ++ H L+LTA+DGGDP LSGTTHI + V DANDNAP+F+ Y VS+
Sbjct: 192 PELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSV 251
Query: 249 QENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEE 307
EN+P GT +L + ATD DEGIN ++TY+F N S F L+ N G+I+T +LD+EE
Sbjct: 252 PENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEE 311
Query: 308 TSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKV 367
+ Y++ V A+DGG A V + + D NDNAPEV S ++ I ED GTVIAL V
Sbjct: 312 SRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSV 371
Query: 368 RDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPA 427
D DSG+NG + C +PFKLE + NYY L+ L+RE+T+DYN+T+ D G P
Sbjct: 372 HDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPP 431
Query: 428 LSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSI 487
LS+ + I L ++D+NDN P F QASY V+ENNP G SI V+A DPD G N RV+YS+
Sbjct: 432 LSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSL 491
Query: 488 LASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVL 547
+ L SYVS++ +GV++A R+FD+EQLR +L + A D G+P LS+NVSL +
Sbjct: 492 AEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLF 551
Query: 548 VGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQA 607
V D NDN P +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+A
Sbjct: 552 VLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKA 611
Query: 608 SEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEV 667
SEPGLF++GL TGEVRTARAL DRDA +Q L+VAV D GQPPLSAT T+ + AD + ++
Sbjct: 612 SEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDI 671
Query: 668 LPDLSDRPEPSDPQ-TELQFYLVVALALISVLFLLAVILAIALRLRR---SSSLDTEGCF 723
L DL P DP+ +L YLVVA+A +S +FL VI+ + LRLRR S L EG
Sbjct: 672 LADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEG-- 729
Query: 724 QTGLCSKSGPGVPPNHSEGT-------LPYSYNLCIASHSAKTE--FNSLNLTPEMAPPQ 774
GVP +H G YS+ + + + S K+ F N + +
Sbjct: 730 ------SRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLLSEE 783
Query: 775 DLLCDDPSMV---VCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTG 831
+P ++ V A+ E+ ++ QAPPNTDWRFSQAQRPGTSGSQNGDDTG
Sbjct: 784 SCEKSEPLLMSDKVDANKEERRV--------QQAPPNTDWRFSQAQRPGTSGSQNGDDTG 835
Query: 832 TWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVY 891
TWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVY
Sbjct: 836 TWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVY 895
Query: 892 IPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 927
IPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 896 IPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 921 bits (2381), Expect = 0.0
Identities = 492/927 (53%), Positives = 632/927 (68%), Gaps = 15/927 (1%)
Query: 11 KSQVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRV---S 67
K VL LL QIRY++PEEL GSRVG +++DLGL REL R +R+
Sbjct: 11 KGLVLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRG 70
Query: 68 AEDYFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNA 127
F ++ SG L+ GRIDRE++C ++C L + + E+ + ++ V V ++DINDNA
Sbjct: 71 RTQLFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNA 130
Query: 128 PRFVAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSK 187
P F ++++I E+A ++F L A D D+ NSL+ Y ++PN +FSL + DGSK
Sbjct: 131 PYFRESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSK 190
Query: 188 YPVLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVS 247
YP L+L++ LDRE +++H L+LTA DGGDP +GT I + V DANDNAP F+Q YR S
Sbjct: 191 YPELVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRAS 250
Query: 248 LQENVPWGTSVLRVMATDQDEGINAEITYAFLN-SPISTSLFNLNPNTGDITTNGTLDFE 306
+ EN+ GT +L V ATD DEG+NAE+ Y+F + +F L+ N+G I+T G LD E
Sbjct: 251 VPENLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHE 310
Query: 307 ETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIK 366
E+ Y + V+A D ++A V I ++D NDNAPEV S ++ +PE+S GT+IAL+
Sbjct: 311 ESGFYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLN 370
Query: 367 VRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKP 426
V D+DS +NG V C+ Q +PFKLE + NYY LV L+REQ YN+T+ ATD+G P
Sbjct: 371 VNDQDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTP 430
Query: 427 ALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYS 486
LS+ T I+L+++D NDN PVF QASY ++ ENNP G S+ V+A DPD N +++YS
Sbjct: 431 PLSTETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYS 490
Query: 487 ILASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRV 546
+ + ++ L SYVS++ +GV++A +FD+EQ R ++ + ARD G P LS+NVSL +
Sbjct: 491 LAENTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSL 550
Query: 547 LVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQ 606
V D NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+
Sbjct: 551 FVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLK 610
Query: 607 ASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQE 666
ASEPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ +
Sbjct: 611 ASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQ 670
Query: 667 VLPDLSDRPEPSDPQT-ELQFYLVVALALISVLFLLAVILAIALRLRR---SSSLDTEGC 722
VL DL P++ +T +L YLVVA+A +S +FL VIL +ALRLRR S L G
Sbjct: 671 VLADLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGG 730
Query: 723 FQTGLCSKSGPGVPPNHSEGTLPYSYNLCIASHSAKTE--FNSLNLTPEMAPPQDLLCDD 780
TG + GV YS+ + + + S K+ F N + + +
Sbjct: 731 GLTGAPASHFVGV-DGVQAFLQTYSHEVSLTTDSRKSHLIFPQPNYADMLVSQESFEKSE 789
Query: 781 PSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 840
P ++ + D + D QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT
Sbjct: 790 PLLL----SGDSVFSKDSHGLIEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 845
Query: 841 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 900
EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT
Sbjct: 846 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 905
Query: 901 NAAGKRDGKAPAGGNGNKKKSGKKEKK 927
NAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 906 NAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 921 bits (2381), Expect = 0.0
Identities = 493/935 (52%), Positives = 636/935 (68%), Gaps = 15/935 (1%)
Query: 3 RAREAEMMKSQVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTR 62
R++E++ VL + A ++QI Y+IPEEL GS VG ++KDLGL+ REL R
Sbjct: 7 RSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAER 66
Query: 63 KLRVSAE---DYFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVV 119
+R+ + F+++ SG L+ GRIDRE++C + C + F + E+ + +F + +
Sbjct: 67 GVRIVSRGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIE 126
Query: 120 IQDINDNAPRFVAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLST 179
+ DINDNAP+F A+ +D++I E+ G++F L A D DV NSL+ Y ++PN++FSL
Sbjct: 127 VTDINDNAPKFQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRV 186
Query: 180 KESPDGSKYPVLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVF 239
+ +G KYP L+LE LDRE ++ H L+LTA DGGDP SGT + + V DANDNAPVF
Sbjct: 187 QSRANGVKYPELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVF 246
Query: 240 SQEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTSL-FNLNPNTGDIT 298
+ YRVS+ EN+P GT +L V ATD+DEG N E+TY+F P + L F LN TG+I
Sbjct: 247 TLPEYRVSVPENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIK 306
Query: 299 TNGTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDL 358
+ LD+EET Y + ++A+DGG + A V I + D NDN+PE+T S + + EDS L
Sbjct: 307 ISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSPL 366
Query: 359 GTVIALIKVRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTI 418
GTV+AL+ V D DS QNG VTC +PFKLE + +YY+LVI AL+REQ + YN+T+
Sbjct: 367 GTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNITV 426
Query: 419 IATDKGKPALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLG 478
ATD G P LS+ L ++DINDN P F Q SY ++ ENN GASI V+A DPD
Sbjct: 427 TATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSK 486
Query: 479 PNGRVSYSILASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPAL 538
N ++ YS+ ++ L SY+S++ +GV++A R+FD+EQ ++ + A D G P L
Sbjct: 487 ENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPL 546
Query: 539 SANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNA 598
S+NVSL + V D NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NA
Sbjct: 547 SSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNA 606
Query: 599 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL 658
WLSY +L+ASEPGLF++G TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL +
Sbjct: 607 WLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTV 666
Query: 659 IFADSLQEVLPDLSDRPEPSDPQT-ELQFYLVVALALISVLFLLAVILAIALRLRR---S 714
ADS+ +VL DL P++ +T +L YLVVA+A +S +FL VI+ +A RLRR S
Sbjct: 667 AVADSIPQVLADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKS 726
Query: 715 SSLDTEGCFQTGLCSKSGPGVPPNHSEGTLPYSYNLCIASHSAKTE--FNSLNLTPEMAP 772
L G TG+ GV + YS+ + + + S K+ F N +
Sbjct: 727 RLLQASGGGLTGVSGSHFVGVDGVRA-FLQTYSHEVSLTADSRKSHLIFPQPNYADTLIS 785
Query: 773 PQDLLCDDPSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGT 832
+ +DP ++ +D K + + QAPPNTDWRFSQAQRPGTSGSQNGDDTGT
Sbjct: 786 QESCEKNDPLSLL----DDSKFPIEDTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGT 841
Query: 833 WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI 892
WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI
Sbjct: 842 WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI 901
Query: 893 PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 927
PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 902 PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 936
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 917 bits (2370), Expect = 0.0
Identities = 500/934 (53%), Positives = 634/934 (67%), Gaps = 39/934 (4%)
Query: 18 FLLSLFCG----AISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE---D 70
FLLS+ G A + +I Y++ EE GS VG +AKDLGL REL R +R+ +
Sbjct: 14 FLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQ 73
Query: 71 YFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRF 130
F ++ SG L+ GRIDRE+IC + C + F + E+ MN++ + V I DINDN PRF
Sbjct: 74 LFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRF 133
Query: 131 VAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPV 190
+ + I+++I E+ PGV+F L A D DV NSL+ Y ++PN++FSL+ + D +KYP
Sbjct: 134 LTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPE 193
Query: 191 LLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQE 250
L+LE+ LDRE + H L+LTA DGGDPP S T HI + V D ND+ PVFS Y+V++ E
Sbjct: 194 LVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPE 253
Query: 251 NVPWGTSVLRVMATDQDEGINAEITYAFLN-SPISTSLFNLNPNTGDITTNGTLDFEETS 309
NVP GT +L V A D DEG+N E+TY+F +P +F+LN TG+I+T LD+EET+
Sbjct: 254 NVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETA 313
Query: 310 RYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRD 369
Y + V+A+DG V I ++D NDNAPEVT S S+ IPED+ LGTVIAL ++D
Sbjct: 314 FYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQD 373
Query: 370 KDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALS 429
+DSG+NG VTC E +PFKLE + NYY+LV L+RE + YN+T+ ATD G P LS
Sbjct: 374 RDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLS 433
Query: 430 SRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILA 489
T I + ++D NDN P F +SY V+++ENNP GASI V+A D D N +++YS+
Sbjct: 434 RETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAE 493
Query: 490 SDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVG 549
++ + SYVS++ +GV++A ++FD+EQLR +L + A D G P LS+N+SL + V
Sbjct: 494 DTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVL 553
Query: 550 DLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D NDN P +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLP 669
PGLF++GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ EVL
Sbjct: 614 PGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLA 673
Query: 670 DLSDRPEPSDP--QTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGL 727
DL EPSD +L YLVVA+A +S +FL V++ +ALRLRR + GL
Sbjct: 674 DLGSL-EPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGL 732
Query: 728 CSKSGPGVPPNHSEG-------TLPYSYNLCIASHSAKT-------EFNSLNLTPEMAPP 773
+ VP +H G YS+ + + + S K+ + + ++ E
Sbjct: 733 AN-----VPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLISQESCEK 787
Query: 774 QDLLCDDPSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 833
D L C N PS+ QAPPNTDWRFSQAQRPGTSGSQNGDDTGTW
Sbjct: 788 NDSLLTSVDFQECKENL-------PSI--QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 838
Query: 834 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 893
PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP
Sbjct: 839 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 898
Query: 894 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 927
GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 899 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 916 bits (2368), Expect = 0.0
Identities = 496/930 (53%), Positives = 634/930 (68%), Gaps = 31/930 (3%)
Query: 19 LLSLFCGAI----SQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE---DY 71
LL +F G + ++QIRY++PEE GS VG ++KDLGL REL R +R+ +
Sbjct: 16 LLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKTQL 75
Query: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
F V+ SG L+ GRIDRE++C C L E + E+ + ++ V V I DINDNAP F
Sbjct: 76 FAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPSFQ 135
Query: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
+++++ E A+PG +F+L +A+D DV NSL+ Y ++PN YFSL + DG+K P L
Sbjct: 136 EDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPEL 195
Query: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
+LE LDRE +++H L+LTA+DGGDP G I + V D ND+ P+F+Q VYRVS+ EN
Sbjct: 196 VLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPEN 255
Query: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSR 310
+ GT VL V ATD DEGIN E+ Y+F N S +F L+ TG++ G+LDFE+
Sbjct: 256 ISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGSLDFEKYRF 315
Query: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Y + ++ +DGG + I +VD NDNAPE+T S N I E+S GTVIAL+ V+D+
Sbjct: 316 YEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQDQ 375
Query: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
DSG+NG V+C+ +PFKLE T NYYKL+ + L+RE YN+T+ ATD+G P LS+
Sbjct: 376 DSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPLSA 435
Query: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
T + L+++D NDN PVF +SY ++ ENNP GASI V+A DPD N V+YS+
Sbjct: 436 ETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDD 495
Query: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
++ L SYVS++ +GV++A ++FD+EQ R EL + ARD G P LS+NVSL + V D
Sbjct: 496 TVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLD 555
Query: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASEP
Sbjct: 556 QNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEP 615
Query: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
GLF++G TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ EVL D
Sbjct: 616 GLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLAD 675
Query: 671 LSDRPEPSDPQT-ELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCS 729
L ++ +T +L YLVVA+A +S +FL+ VI+ +ALRL R + GL
Sbjct: 676 LGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGLA- 734
Query: 730 KSGPGVPPNHSEGT-------LPYSYNLCIASHSAKTE--FNSLNLTPEMAPPQDLLCDD 780
G+P +H G YS+ + + + S K+ F N + + +
Sbjct: 735 ----GMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCEKSE 790
Query: 781 PSMVVCASNEDHKIAY---DPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 837
P ++ ED I DP+ S+ QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 791 PLLIA----EDSAIILGKCDPT-SNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 845
Query: 838 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 897
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 846 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 905
Query: 898 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 927
TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 906 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 913 bits (2360), Expect = 0.0
Identities = 498/932 (53%), Positives = 631/932 (67%), Gaps = 29/932 (3%)
Query: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE--- 69
QVL LL GA + QIRY+IPEEL GS VG + KDLGL +EL +R+ +
Sbjct: 13 QVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRM 72
Query: 70 DYFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPR 129
F+++ +G L+ GRIDRE++C + C + F + E+ +N++ V V I DINDN PR
Sbjct: 73 QLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPR 132
Query: 130 FVAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYP 189
F+ + ++++I E+A P +F L D DV NSL+ + ++ N +FS+ + G KYP
Sbjct: 133 FLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYP 192
Query: 190 VLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQ 249
L+LE LDRE ++ +RL+LTAMDGGDP S I + V D NDN P+F+Q VYRVS+
Sbjct: 193 ELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVP 252
Query: 250 ENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEET 308
EN+P GT VL V ATDQDEG++ E+TY+F+ S +F LN TG+I+T+ LD+E++
Sbjct: 253 ENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSANLDYEDS 312
Query: 309 SRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVR 368
S Y L VEA+DG V I I+D NDN PEV S S I E + GTVIAL +V
Sbjct: 313 SFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVF 372
Query: 369 DKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPAL 428
D+DSG NG+VTC +PF+LE + NYY+LV AL+RE+ YN+T+ ATDKG P L
Sbjct: 373 DRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPL 432
Query: 429 SSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSIL 488
S+ T I+L+++D NDN P F +SY V+V ENNP GASI V+A DPD+ N +VSYS+
Sbjct: 433 STETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLA 492
Query: 489 ASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV 548
L+ L SYVS++ +G+++A R+FD+EQLR +L + A D G P LS+NVSL + V
Sbjct: 493 EDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFV 552
Query: 549 GDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQAS 608
D NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+AS
Sbjct: 553 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 612
Query: 609 EPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVL 668
EPGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L
Sbjct: 613 EPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDIL 672
Query: 669 PDL-SDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGL 727
DL S P ++L YLVVA+A +S +FL VI+ +ALRL+R ++ L
Sbjct: 673 ADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQR--------WHKSRL 724
Query: 728 CSKSGPG---VPPNHSEGT-------LPYSYNLCIASHSAKTE--FNSLNLTPEMAPPQD 775
SG G +P +H G YS+ + + + S K+ F N + +
Sbjct: 725 LQASGGGLASMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLINQES 784
Query: 776 LLCDDPSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 835
+P ++ +D QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 785 YEKSEPLLI----TQDLLETKGEPRQLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 840
Query: 836 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 895
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 841 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 900
Query: 896 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 927
NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 909 bits (2348), Expect = 0.0
Identities = 488/929 (52%), Positives = 627/929 (67%), Gaps = 25/929 (2%)
Query: 14 VLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE---D 70
VL FLL+ A + QIRY++ EE+ GS VG +AKDLGL L + +R+ +
Sbjct: 14 VLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRGRSQ 73
Query: 71 YFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRF 130
F ++ SG L+ RIDRE++C + C L F + E+ + ++ V V I DINDNAPRF
Sbjct: 74 LFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAPRF 133
Query: 131 VAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPV 190
+ ++L+I E+ PG + L +A DADV N+L+ Y +NPN +FSL + DG+KYP
Sbjct: 134 GVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKYPE 193
Query: 191 LLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQE 250
L+LE+ LDRE ++ H L+L A DGGDP LSGT+ I ++V DANDNAPVF+Q YR+S+ E
Sbjct: 194 LVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPE 253
Query: 251 NVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETS 309
N GT +L V ATD DEG A++ Y SP TS +F L +G++T LD+E+ +
Sbjct: 254 NTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDAT 313
Query: 310 RYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRD 369
+ + +EA+DG V + ++D NDNAPE S ++ + EDS GT+I L V D
Sbjct: 314 FHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHD 373
Query: 370 KDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALS 429
+DSGQN TC E++PFKLE + NYY+LV AL+REQ + YN+T+ A D G P+LS
Sbjct: 374 RDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSLS 433
Query: 430 SRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILA 489
+ I L ++DINDNAP F + SY ++ ENNP GAS+ V+A DPD N V+YS
Sbjct: 434 TDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFAE 493
Query: 490 SDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVG 549
++ L SY+S++ +GV++A R+FD+EQLR ++ + ARD G+P LS+NVSL + V
Sbjct: 494 DTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVL 553
Query: 550 DLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D NDNAP +LYPA DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSYH+L+ASE
Sbjct: 554 DQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VA++D GQPPLSAT TL + AD + ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDILA 673
Query: 670 DL-SDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRR---SSSLDTEGCFQT 725
DL S P ++L YLVVA+A +S +FL VI+ +A RLRR S L G T
Sbjct: 674 DLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSLT 733
Query: 726 GLCSKSGPGVPPNHSEGTLPYSYNLCIASHSAKT-------EFNSLNLTPEMAPPQDLLC 778
G+ S GV + YS+ + + + S K+ + ++ E +D L
Sbjct: 734 GMQSSHFVGVDGVRA-FLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKDFLS 792
Query: 779 DDPSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 838
S++ E+ + + S QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 793 APQSLL----EEEREETF-----SQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 843
Query: 839 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 898
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 844 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 903
Query: 899 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 927
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 904 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 908 bits (2346), Expect = 0.0
Identities = 486/928 (52%), Positives = 627/928 (67%), Gaps = 23/928 (2%)
Query: 14 VLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE---D 70
VL LL + A + QIRY++PEE G VG ++KDL L REL R++R+ +
Sbjct: 14 VLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGRTQ 73
Query: 71 YFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRF 130
F+++ SG L+ GRIDRE++C + C + F+ + E+ + ++ + + + DIND+AP+F
Sbjct: 74 LFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAPKF 133
Query: 131 VAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPV 190
A+ ++++I E A+PG ++ L A D DV NSL+ Y ++PN +FSL+ + +G+ P
Sbjct: 134 QAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINPE 193
Query: 191 LLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQE 250
L+LE+ LDRE ++H L+LTA DGG+P S T I + V D NDNAPVF+Q +YRV + E
Sbjct: 194 LVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVLE 253
Query: 251 NVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTSL-FNLNPNTGDITTNGTLDFEETS 309
NVP GT +L A+D DEGIN ++ Y F SL F LN NTG+I+T +LD+EE S
Sbjct: 254 NVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEECS 313
Query: 310 RYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRD 369
Y + ++A+DGG V I + D NDN PEVT S + + ED+ GTVI L D
Sbjct: 314 FYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAHD 373
Query: 370 KDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALS 429
+DSG+NG V C QE + F LE++ ++YY+L+ A L+RE+ ++YN+T+ ATD+G P LS
Sbjct: 374 RDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPLS 433
Query: 430 SRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILA 489
+ ITL ++DINDN P F QASY V++ ENN G SI V A DPD N RV YS+
Sbjct: 434 TEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLAE 493
Query: 490 SDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVG 549
++ L +YVS++ +GV++A +FD+EQ R ++ + A D GSP LS+NVSLR+ V
Sbjct: 494 DTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFVL 553
Query: 550 DLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY + +ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDILA 673
Query: 670 DLSDRPEPSDPQ-TELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLC 728
DL P+D + ++L YLVVA+A++S +FL VI +ALRLR S GL
Sbjct: 674 DLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATSDGLA 733
Query: 729 SKSGPGVPPNHSEG---------TLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCD 779
GVP +H G T ++L S + F N + Q +
Sbjct: 734 -----GVPTSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLIFPQPNYADTLISQQSCEKN 788
Query: 780 DPSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 839
+P +C S D K + + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD
Sbjct: 789 EP---LCVS-VDSKFPIEDTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 844
Query: 840 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 899
TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL
Sbjct: 845 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 904
Query: 900 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 927
TNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 905 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 903 bits (2333), Expect = 0.0
Identities = 482/926 (52%), Positives = 628/926 (67%), Gaps = 29/926 (3%)
Query: 19 LLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE---DYFNVS 75
LL C S QIRY++ EEL GS VG +A DLGL REL R +R+ + F+++
Sbjct: 19 LLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLN 78
Query: 76 LESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKGI 135
+SG L+ RIDRE++C + C ++ + E+ + +F V + I+DINDNAP F + +
Sbjct: 79 PQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEEL 138
Query: 136 DLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEK 195
+++I E +PG +F + +A D DV NSL+ Y ++PN YFSL+ +G+KYP L+LE+
Sbjct: 139 EIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLER 198
Query: 196 PLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPWG 255
LDRE + H+L+L A DGGDP SG HI + V DANDN P+F+Q YRVS+ ENVP G
Sbjct: 199 ALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVG 258
Query: 256 TSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSRYVLS 314
T +L V ATD DEG NA+++Y P + +F+LN +G+++ +LD+E+ Y +
Sbjct: 259 TRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIK 318
Query: 315 VEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDSGQ 374
+EA+DG + + + ++D NDNAPE+T S ++ +PE+ +G IALI V D+DSGQ
Sbjct: 319 IEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDSGQ 378
Query: 375 NGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSI 434
NG V + +PFKLE + YY+LV A +L+REQ ++YN+++ A+D G P LS+ T I
Sbjct: 379 NGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTETHI 438
Query: 435 TLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDLEP 494
TLH+ DINDN P F SY ++ ENNP GASI V+A DPD N R++Y++ L+
Sbjct: 439 TLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTLQG 498
Query: 495 RELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDN 554
L S+VS++ +GV++A R+FD+EQ R +L + A D G+P LS+NVSL + V D NDN
Sbjct: 499 APLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDN 558
Query: 555 APRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFS 614
AP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASEPGLFS
Sbjct: 559 APEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFS 618
Query: 615 LGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDL-SD 673
+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L DL S
Sbjct: 619 VGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSL 678
Query: 674 RPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSGP 733
P ++L YLVVA+A +S +FL VI+ +ALRLRR ++ L SG
Sbjct: 679 EPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRR--------WHKSRLLQASGG 730
Query: 734 GV---PPNHSEGT-------LPYSYNLCIASHSAKTE--FNSLNLTPEMAPPQDLLCDDP 781
G+ P +H G YS+ + + + S K+ F N + + +P
Sbjct: 731 GLASTPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKSEP 790
Query: 782 SMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 841
++ +D S QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE
Sbjct: 791 LLI----TQDLLEMKGDSNLLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 846
Query: 842 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 901
MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN
Sbjct: 847 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 906
Query: 902 AAGKRDGKAPAGGNGNKKKSGKKEKK 927
AAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 907 AAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 902 bits (2330), Expect = 0.0
Identities = 489/927 (52%), Positives = 620/927 (66%), Gaps = 32/927 (3%)
Query: 19 LLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE---DYFNVS 75
LL + ++QI Y++ EE GS VG +AKDLGL+ REL R +R+ + F ++
Sbjct: 19 LLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALN 78
Query: 76 LESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKGI 135
SG L+ GRIDRE++C R C E + E+ + + V V I D+NDN P F +
Sbjct: 79 PRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQR 138
Query: 136 DLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEK 195
++++ E+ PG +F L A D DV NSL+ Y +N N YFSL + DG KYP L+LE+
Sbjct: 139 EIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLER 198
Query: 196 PLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPWG 255
LDRE ++ H L+LTA DGGDP SGT I I + D NDNAPVF+Q Y VS++ENVP G
Sbjct: 199 ALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPVG 258
Query: 256 TSVLRVMATDQDEGINAEITYAF--LNSPISTSLFNLNPNTGDITTNGTLDFEETSRYVL 313
T +L V ATD DEG N ++TY+F + IS LF LN +GDIT G LD+E++ Y +
Sbjct: 259 TRLLTVKATDPDEGANGDVTYSFRKVRDKIS-QLFQLNSLSGDITILGGLDYEDSGFYDI 317
Query: 314 SVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDSG 373
VEA DG A V + ++DENDNAPEVT S ++ + E S GTVIAL V D DSG
Sbjct: 318 DVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSG 377
Query: 374 QNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTS 433
NG+VTC + +PF LE T NYY+L+ L+RE+ ++YN+T+ ATD+G P LS+ T
Sbjct: 378 GNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETH 437
Query: 434 ITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDLE 493
I+L + DINDN P F ASY ++ ENNP GASI ++A DPD G N R++YS+ +
Sbjct: 438 ISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQ 497
Query: 494 PRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLND 553
L SYVS++ +G+++A +FD+EQ R +L + A D G P LS+NVSL + V D ND
Sbjct: 498 GAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQND 557
Query: 554 NAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLF 613
N P +LYP DGS ++ PR+A+ GYLVTKVVAVD DSG NAWLSY +L++SEPGLF
Sbjct: 558 NVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLF 617
Query: 614 SLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSD 673
++GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT TL + ADS+ +VL DL
Sbjct: 618 AVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGS 677
Query: 674 RPEPSDP-QTELQFYLVVALALISVLFLLAVILAIALRLRR---SSSLDTEGCFQTGLCS 729
+DP + L YLVVA+A +S +FL V + +AL+LRR S L EG
Sbjct: 678 LKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEG-------- 729
Query: 730 KSGPGVPPNHSEGT-------LPYSYNLCIASHSAKTE--FNSLNLTPEMAPPQDLLCDD 780
GVP +H G YS+ + + + S K+ F+ + + + +
Sbjct: 730 SRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSE 789
Query: 781 PSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 840
P ++ + + + DP+L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT
Sbjct: 790 PLLI---TQDLLETKGDPNL--QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 844
Query: 841 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 900
EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT
Sbjct: 845 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 904
Query: 901 NAAGKRDGKAPAGGNGNKKKSGKKEKK 927
NAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 905 NAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 896 bits (2315), Expect = 0.0
Identities = 485/927 (52%), Positives = 620/927 (66%), Gaps = 34/927 (3%)
Query: 20 LSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED---YFNVSL 76
L L A + I Y++PEE GS VG +AKDLGL +EL +R+ + F ++
Sbjct: 20 LELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGRMPLFALNP 79
Query: 77 ESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKGID 136
SG L+ RIDRE++C + + C + F + E+ M +F V V I DINDN P+F + ++
Sbjct: 80 RSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQFQLEELE 139
Query: 137 LEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEKP 196
++ E PG + SL QD DV NSL+ Y ++ N +FSL ++ DG ++P ++L+ P
Sbjct: 140 FKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHPEMVLQSP 199
Query: 197 LDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPWGT 256
LDRE ++ H LILTA DGG+P SGT I+I+V DANDN P F+Q Y +++ ENVP GT
Sbjct: 200 LDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVPENVPLGT 259
Query: 257 SVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEETSRYVLSV 315
+L V ATD DEG N E+TY+F N + +F L+ TG+I+ LDFEE Y + V
Sbjct: 260 QLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEEYKMYSMEV 319
Query: 316 EAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDSGQN 375
+A+DG A V I+++D NDNAPEVT S + +PE+ GT+IALI V D+DSG N
Sbjct: 320 QAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVHDQDSGDN 379
Query: 376 GMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSIT 435
G TC+ +PFKLE NYY+LV L+RE + YN+TI A D+G PALS+ T I+
Sbjct: 380 GYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPALSTETHIS 439
Query: 436 LHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDLEPR 495
L ++DINDN+PVFHQ SY ++ ENNP GASI V A D D N +++YS++ ++
Sbjct: 440 LLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLIEDTIQGA 499
Query: 496 ELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNA 555
L +Y+S++ +GV++A R+FD+EQ R +L + ARD G P LS+NVSL + + D NDNA
Sbjct: 500 PLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFLLDQNDNA 559
Query: 556 PRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSL 615
P +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG NAWLSY +L+ASEPGLFS+
Sbjct: 560 PEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSV 619
Query: 616 GLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDL-SDR 674
GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L DL S
Sbjct: 620 GLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDILADLGSLE 679
Query: 675 PEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSGPG 734
P ++L YLVVA A +S +FL VI+ +A RLRR ++ L SG G
Sbjct: 680 PSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRR--------WHKSRLLQASGGG 731
Query: 735 ---VPPNHSEGT-------LPYSYNLCIASHSAKTE--FNSLNLTPEMAPPQDLLCDDPS 782
+P +H G YS+ + + + S K+ F N + + C+
Sbjct: 732 LASMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQES--CEKKG 789
Query: 783 MVVCASN--EDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 840
+ + ED K + S QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT
Sbjct: 790 FLSAPQSLLEDKKEPF-----SQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 844
Query: 841 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 900
EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT
Sbjct: 845 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 904
Query: 901 NAAGKRDGKAPAGGNGNKKKSGKKEKK 927
NAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 905 NAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 888 bits (2295), Expect = 0.0
Identities = 480/915 (52%), Positives = 615/915 (67%), Gaps = 29/915 (3%)
Query: 30 QIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE---DYFNVSLESGDLLVNGR 86
QIRY++PEE GS VG ++KDLGL R+L +R+ + F ++ SG L+ GR
Sbjct: 30 QIRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRGRTQLFALNPRSGSLITAGR 89
Query: 87 IDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKGIDLEICESALPG 146
IDRE++C + C + T+ E+ +F V + I DINDN P+F + ++++I E A+PG
Sbjct: 90 IDREELCAQSPRCLININTLVEDKGKLFGVEIEIIDINDNNPKFQVEDLEVKINEIAVPG 149
Query: 147 VKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEKPLDREHQSSHR 206
++ L A D DV NSL+ Y ++PN +FSL + +G+ P L+LE+ LDRE +++H
Sbjct: 150 ARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAHH 209
Query: 207 LILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPWGTSVLRVMATDQ 266
L+LTA DGG PP S T I + V D NDNAPVF +YRV + EN+P GT +L V A+D
Sbjct: 210 LVLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENMPPGTRLLTVTASDP 269
Query: 267 DEGINAEITYAFLN-SPISTSLFNLNPNTGDITTNGTLDFEETSRYVLSVEAKDGGVHTA 325
DEGIN ++ Y F + T LF LN NTG+I+ +LD+EE S Y + ++A+D G
Sbjct: 270 DEGINGKVAYKFRKINEKQTPLFQLNENTGEISIAKSLDYEECSFYEMEIQAEDVGALLG 329
Query: 326 HCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDSGQNGMVTCYTQEE 385
+ I + D NDN PEV S + + E+S GTVIA + V D+DSG+NG V CYT++
Sbjct: 330 RTKLLISVEDVNDNRPEVIITSLFSPVLENSLPGTVIAFLSVHDQDSGKNGQVVCYTRDN 389
Query: 386 VPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNA 445
+PFKLE + NYY+LV L+RE + YN+T++A+D G P LS+ T I LH++DINDN
Sbjct: 390 LPFKLEKSIGNYYRLVTRKYLDRENVSIYNITVMASDLGTPPLSTETQIALHVADINDNP 449
Query: 446 PVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDLEPRELLSYVSVSP 505
P F ASY ++ ENN GASI ++A DPD N +V+YS+ L+ L SY+S++
Sbjct: 450 PTFPHASYSAYILENNLRGASIFSLTAHDPDSQENAQVTYSVTEDTLQGAPLSSYISINS 509
Query: 506 QSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGP 565
+GV++A ++FD+EQ+R +L + A D G P LS+N+SL + V D NDNAP +LYPAL
Sbjct: 510 DTGVLYALQSFDYEQIRDLQLLVTASDSGDPPLSSNMSLSLFVLDQNDNAPEILYPALPT 569
Query: 566 DGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTA 625
DGS ++ PR+AE GYLVTKVVAVD DSG NAWLSY +L+ASEPGLFS+GL TGEVRTA
Sbjct: 570 DGSTGVELAPRSAERGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTA 629
Query: 626 RALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRPEPSDP-QTEL 684
RAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ EVL +L DP + L
Sbjct: 630 RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLTELGSLKPSVDPNDSSL 689
Query: 685 QFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSG---PGVPPNHSE 741
YLVVA+A IS +FL V + + LRLRR ++ L SG GVP +H
Sbjct: 690 TLYLVVAVAAISCVFLAFVAVLLGLRLRR--------WHKSRLLQDSGGRLVGVPASHFV 741
Query: 742 GT-------LPYSYNLCIASHSAKTE--FNSLNLTPEMAPPQDLLCDDPSMVVCASNEDH 792
G YS + + + S K+ F N +M Q+ + S++ ++
Sbjct: 742 GVEEVQAFLQTYSQEVSLTADSRKSHLIFPQPNYA-DMLISQEGCEKNDSLLTSVDFHEY 800
Query: 793 KIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASAS 852
K D QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASAS
Sbjct: 801 KNEAD---HGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASAS 857
Query: 853 EAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA 912
EAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA
Sbjct: 858 EAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA 917
Query: 913 GGNGNKKKSGKKEKK 927
GGNGNKKKSGKKEKK
Sbjct: 918 GGNGNKKKSGKKEKK 932
>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
[Homo sapiens]
Length = 944
Score = 846 bits (2185), Expect = 0.0
Identities = 467/942 (49%), Positives = 614/942 (65%), Gaps = 48/942 (5%)
Query: 19 LLSLFC-GAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED---YFNV 74
+LSL C G +S Q+RY++ EE G+ VG +A+DLGL + +L +R+L++ +E+ YF++
Sbjct: 18 MLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSL 77
Query: 75 SLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKG 134
SL SG L VN +IDRE +CG C L + V E+P+ + V V I D+NDN+P F
Sbjct: 78 SLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPE 137
Query: 135 IDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLE 194
++ I ESA G +F LDSAQD DV N++ YT++PN +FSL+ K DG +P L+LE
Sbjct: 138 REMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLE 197
Query: 195 KPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPW 254
+ LDRE Q+ H+L+LTA+DGG P SGTT I + V D NDNAP F V RV + EN P
Sbjct: 198 QQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPI 257
Query: 255 GTSVLRVMATDQDEGINAEITYAFLN--SPISTSLFNLNPNTGDITTNGTLDFEETSRYV 312
GT +LR+ ATD DEG N ++ Y+F + S +LF L+P++G I G +DFEE+ Y
Sbjct: 258 GTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYE 317
Query: 313 LSVEAKDGG--VHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
+ A+D G HC +Q+++ D NDNAPEV S +N + E + +GTV+ L VRD+
Sbjct: 318 IHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDR 377
Query: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
DSG+NG V+ ++PF+++ S+N+Y L+ + L+RE T+ Y + ++A+D G P+L
Sbjct: 378 DSGRNGEVSLDISPDLPFQIKP-SENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHK 436
Query: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
+I L+ISD+NDNAP F+Q Y ++ EN PPG+ + V+ASDPD G N R++YSI+ +
Sbjct: 437 HLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGN 496
Query: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
++ S+V V+P+ G +FAQR FD+E L+ ++ + RD GSP L AN SL V V D
Sbjct: 497 QVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLD 556
Query: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVL-QASE 609
NDNAP VL+P + SA +PR+A PG LVTKV AVDAD+GHNAWLSY +L Q++
Sbjct: 557 ENDNAPAVLHPRPDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTA 615
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLP 669
PGLF + TGEVRTARAL + D+ Q+++V VRD G P LS+TAT+ L+ D E +P
Sbjct: 616 PGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMP 675
Query: 670 DLSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCS 729
SD +++L YL+VALA +S+L L+ A L+ ++ D G G C
Sbjct: 676 KSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGGG----GQCC 731
Query: 730 KSGPGVPPNH-----------SEGTLPYS-------------YNLCIASHSAKTEFNSLN 765
+ P+ S+GTL Y Y C + S ++F L
Sbjct: 732 RRQDSPSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLR 791
Query: 766 LTPEMAPPQDLLCDDPSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQ 825
P L +P + SN + S QAPPNTDWRFSQAQRPGTSGSQ
Sbjct: 792 --PLSVQQPTALALEPDAIRSRSNTLRE-------RSQQAPPNTDWRFSQAQRPGTSGSQ 842
Query: 826 NGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPD 885
NGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPD
Sbjct: 843 NGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPD 902
Query: 886 YRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 927
YRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 903 YRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
>gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precursor
[Homo sapiens]
Length = 934
Score = 823 bits (2125), Expect = 0.0
Identities = 450/928 (48%), Positives = 596/928 (64%), Gaps = 36/928 (3%)
Query: 22 LFCGAISQQ---IRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRV---SAEDYFNVS 75
L GA+++ I Y IPEE G VG + +LGL + L R+ RV ++ +F V+
Sbjct: 21 LLLGALNKASTVIHYEIPEEREKGFAVGNVVANLGLDLGSLSARRFRVVSGASRRFFEVN 80
Query: 76 LESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKGI 135
E+G++ VN R+DRE++CG C + E V ENP+ +F V VVIQDINDN P F + +
Sbjct: 81 RETGEMFVNDRLDREELCGTLPSCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQEM 140
Query: 136 DLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEK 195
LEI E+ PG +F L+SA D DV NSL+ Y ++ N+YF+L + D +KY L+LE+
Sbjct: 141 KLEISEAVAPGTRFPLESAHDPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVLER 200
Query: 196 PLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPWG 255
LDRE + S +L+LTA+DGG P LS + I I+V DANDNAPVF+Q +YR + E+ P G
Sbjct: 201 ALDREREPSLQLVLTALDGGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAPSG 260
Query: 256 TSVLRVMATDQDEGINAEITYAF--LNSPISTSLFNLNPNTGDITTNGTLDFEETSRYVL 313
T V++V+ATD DEG N EI Y+F N LF L+ TG +T G LDFE+T + +
Sbjct: 261 TRVVQVLATDLDEGPNGEIIYSFGSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLHEI 320
Query: 314 SVEAKDGGVHT--AHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKD 371
++AKD G + AHC V +E+VD NDNAPE+T S + +PED+ LGTVIAL+ V D D
Sbjct: 321 YIQAKDKGANPEGAHCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTDLD 380
Query: 372 SGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSR 431
+G+NG+VTC +PF L S+ KNY+ L + L+RE +YN++I A D G P+LS+
Sbjct: 381 AGENGLVTCEVPPGLPFSLTSSLKNYFTLKTSADLDRETVPEYNLSITARDAGTPSLSAL 440
Query: 432 TSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASD 491
T + + +SDINDN P Q+SY V++ ENN PGA I +S DPD N R+S+ +L
Sbjct: 441 TIVRVQVSDINDNPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNARLSFFLLEQG 500
Query: 492 LEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDL 551
E + Y +++ +G+V + D+E R FELT D G+P L+ N+S+ + V D
Sbjct: 501 AETGLVGRYFTINRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVTDR 560
Query: 552 NDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPG 611
NDNAP+VLYP P GS++ +M+PR G+LV++VV DAD+GHNAWLSY +L +
Sbjct: 561 NDNAPQVLYPR--PGGSSV-EMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLLGSPNQS 617
Query: 612 LFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDL 671
LF++GL TG++ TAR + D D+ RQ L V ++D G+P LS TATL + + E +
Sbjct: 618 LFAIGLHTGQISTARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTEDSPEARAEF 677
Query: 672 SDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRR-SSSLDTEGCFQTGLCSK 730
P + + L FYL+++L L+SV F++ V I ++ + S D + L
Sbjct: 678 PSGSAPREQKKNLTFYLLLSLILVSVGFVVTVFGVIIFKVYKWKQSRDLYRAPVSSLYRT 737
Query: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790
GP + + G L ++ H ++ + LT + LL + AS +
Sbjct: 738 PGPSLHADAVRGGL-------MSPHL----YHQVYLTTDSRRSDPLLKKPGAASPLASRQ 786
Query: 791 DHKIAYDPSL-----------SSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 839
+ + DP QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD
Sbjct: 787 NTLRSCDPVFYRQVLGAESAPPGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 846
Query: 840 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 899
TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL
Sbjct: 847 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 906
Query: 900 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 927
TNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 907 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 934
>gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precursor
[Homo sapiens]
Length = 938
Score = 819 bits (2115), Expect = 0.0
Identities = 450/944 (47%), Positives = 596/944 (63%), Gaps = 57/944 (6%)
Query: 19 LLSLF--CGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE---DYFN 73
LL LF G + QIRY +PEE G+ VG +A+D L L R+L+V+ E +F
Sbjct: 17 LLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFR 76
Query: 74 VSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAK 133
V L+SG LL+ IDRE +CG C + E V E P+ ++ V I D+ND+APRF +
Sbjct: 77 VDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQ 136
Query: 134 GIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLL 193
+DLEI E+A PG +F L+ AQDADV NS+ Y ++ N++F+L K+ DGS P LLL
Sbjct: 137 QLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLL 196
Query: 194 EKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVP 253
EKPLDRE QS +RL+LTA+DGG+PP SGT + + V D NDNAP F Q YR+S+ E+ P
Sbjct: 197 EKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAP 256
Query: 254 WGTSVLRVMATDQDEGINAEITYAFLNSPIST--SLFNLNPNTGDITTNGTLDFEETSRY 311
G ++++ A+D D G + +T+ F +LF+L+P TG +T G LDFE + Y
Sbjct: 257 AGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYY 316
Query: 312 VLSVEAKDGG--VHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRD 369
V A+DGG HC+++++++D NDNAP +T S +PE ++ GTV+ALI V+D
Sbjct: 317 EFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQD 376
Query: 370 KDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALS 429
DSG NG V+ + +PF L+S +N + LV AG L+RE + Y++ + A+D G P LS
Sbjct: 377 PDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLS 436
Query: 430 SRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILA 489
+ +I L+ISD+NDN P F Q S+ V V ENN PG + ++ASDPD G N +SYS+L
Sbjct: 437 THRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLE 496
Query: 490 SDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVG 549
S++S++PQ+G V A R+FD+EQ + + +QARD+G+P LS+ V++R+ V
Sbjct: 497 PRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVL 556
Query: 550 DLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
DLNDNAP VL P P GS +P + G+L+TKV AVD DSG+NAW+SY +L+A +
Sbjct: 557 DLNDNAPAVLRPRARP-GSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPD 615
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLP 669
P LF++ GEVRTA + D Q+L++ V+D G PPLS + TL + + V+P
Sbjct: 616 PSLFAVSRYAGEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVP 674
Query: 670 DLSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLC- 728
DL + P + ++ L YL V+L I + + + ++ LR ++ T CF G C
Sbjct: 675 DLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVT--CFPAGTCA 732
Query: 729 ----SKSGPGVPPN---------------------HSEGTLPYSYNLCIASHSAKTEFNS 763
S+ G+PP+ HS G P + SA T +S
Sbjct: 733 CLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLA--------SAPTRSDS 784
Query: 764 LNLTPEMAPPQDLLCDDPSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSG 823
+ + P + +P C + D QAPPNTDWRFSQAQRPGTSG
Sbjct: 785 FMMVKSPSAP---MAGEPVRPSCPPS-------DLLYGLEQAPPNTDWRFSQAQRPGTSG 834
Query: 824 SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHV 883
SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHV
Sbjct: 835 SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHV 894
Query: 884 PDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 927
PDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 895 PDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
[Homo sapiens]
Length = 813
Score = 679 bits (1751), Expect = 0.0
Identities = 373/763 (48%), Positives = 493/763 (64%), Gaps = 24/763 (3%)
Query: 13 QVLFPF-LLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE-- 69
++L PF LL C S QIRY++PEEL GS VG +AKDLGL +EL R +R+ +
Sbjct: 12 ELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGR 71
Query: 70 -DYFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAP 128
F ++ SG L+ GRIDRE++C + C + F + EN M ++ V V I DINDN P
Sbjct: 72 TQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFP 131
Query: 129 RFVAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKY 188
RF + + +++ E+A G + L A+DADV NSL+ Y ++ N +FSL DG KY
Sbjct: 132 RFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKY 191
Query: 189 PVLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSL 248
P L+LE+PLDRE ++ H L+LTA+DGGDP LSGTTHI + V DANDNAP+F+ Y VS+
Sbjct: 192 PELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSV 251
Query: 249 QENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTS-LFNLNPNTGDITTNGTLDFEE 307
EN+P GT +L + ATD DEGIN ++TY+F N S F L+ N G+I+T +LD+EE
Sbjct: 252 PENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEE 311
Query: 308 TSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKV 367
+ Y++ V A+DGG A V + + D NDNAPEV S ++ I ED GTVIAL V
Sbjct: 312 SRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSV 371
Query: 368 RDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPA 427
D DSG+NG + C +PFKLE + NYY L+ L+RE+T+DYN+T+ D G P
Sbjct: 372 HDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPP 431
Query: 428 LSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSI 487
LS+ + I L ++D+NDN P F QASY V+ENNP G SI V+A DPD G N RV+YS+
Sbjct: 432 LSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSL 491
Query: 488 LASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVL 547
+ L SYVS++ +GV++A R+FD+EQLR +L + A D G+P LS+NVSL +
Sbjct: 492 AEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLF 551
Query: 548 VGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQA 607
V D NDN P +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+A
Sbjct: 552 VLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKA 611
Query: 608 SEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEV 667
SEPGLF++GL TGEVRTARAL DRDA +Q L+VAV D GQPPLSAT T+ + AD + ++
Sbjct: 612 SEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDI 671
Query: 668 LPDLSDRPEPSDPQ-TELQFYLVVALALISVLFLLAVILAIALRLRR---SSSLDTEGCF 723
L DL P DP+ +L YLVVA+A +S +FL VI+ + LRLRR S L EG
Sbjct: 672 LADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEG-- 729
Query: 724 QTGLCSKSGPGVPPNHSEGT-------LPYSYNLCIASHSAKT 759
GVP +H G YS+ + + + S K+
Sbjct: 730 ------SRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKS 766
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,426,655
Number of Sequences: 37866
Number of extensions: 1695194
Number of successful extensions: 10344
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3076
Number of HSP's gapped (non-prelim): 716
length of query: 927
length of database: 18,247,518
effective HSP length: 112
effective length of query: 815
effective length of database: 14,006,526
effective search space: 11415318690
effective search space used: 11415318690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.