Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 11128031
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11128031 protocadherin gamma subfamily B, 5 isoform 1
precursor [Homo sapiens]
(923 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 1828 0.0
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs... 1573 0.0
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 1565 0.0
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 1371 0.0
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 1326 0.0
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 1319 0.0
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 1316 0.0
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 1306 0.0
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs... 1286 0.0
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 1123 0.0
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 1080 0.0
gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs... 1077 0.0
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 1060 0.0
gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precurs... 1039 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 940 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 933 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 931 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 923 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 922 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 919 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 909 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 900 0.0
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 896 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 895 0.0
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs... 890 0.0
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 889 0.0
gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precurs... 825 0.0
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs... 814 0.0
gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precurs... 814 0.0
gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precurs... 702 0.0
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1828 bits (4734), Expect = 0.0
Identities = 923/923 (100%), Positives = 923/923 (100%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFSLNSKSGEITTQ 300
VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFSLNSKSGEITTQ
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFSLNSKSGEITTQ 300
Query: 301 KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGT 360
KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGT
Sbjct: 301 KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGT 360
Query: 361 LIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA 420
LIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA
Sbjct: 361 LIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA 420
Query: 421 TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLN 480
TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLN
Sbjct: 421 TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLN 480
Query: 481 GQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSA 540
GQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSA
Sbjct: 481 GQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSA 540
Query: 541 NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL 600
NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL
Sbjct: 541 NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL 600
Query: 601 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 660
SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF
Sbjct: 601 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 660
Query: 661 ADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAW 720
ADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAW
Sbjct: 661 ADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAW 720
Query: 721 SCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDS 780
SCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDS
Sbjct: 721 SCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDS 780
Query: 781 SGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ 840
SGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ
Sbjct: 781 SGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ 840
Query: 841 AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG 900
AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG
Sbjct: 841 AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG 900
Query: 901 KRDGKAPAGGNGNKKKSGKKEKK 923
KRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 KRDGKAPAGGNGNKKKSGKKEKK 923
>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 1573 bits (4074), Expect = 0.0
Identities = 799/799 (100%), Positives = 799/799 (100%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFSLNSKSGEITTQ 300
VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFSLNSKSGEITTQ
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQIFSLNSKSGEITTQ 300
Query: 301 KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGT 360
KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGT
Sbjct: 301 KKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGT 360
Query: 361 LIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA 420
LIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA
Sbjct: 361 LIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA 420
Query: 421 TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLN 480
TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLN
Sbjct: 421 TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLN 480
Query: 481 GQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSA 540
GQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSA
Sbjct: 481 GQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSA 540
Query: 541 NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL 600
NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL
Sbjct: 541 NVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL 600
Query: 601 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 660
SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF
Sbjct: 601 SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 660
Query: 661 ADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAW 720
ADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAW
Sbjct: 661 ADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAW 720
Query: 721 SCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDS 780
SCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDS
Sbjct: 721 SCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDS 780
Query: 781 SGALFPLCNSSESTSHPEL 799
SGALFPLCNSSESTSHPEL
Sbjct: 781 SGALFPLCNSSESTSHPEL 799
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1565 bits (4053), Expect = 0.0
Identities = 792/925 (85%), Positives = 844/925 (91%), Gaps = 4/925 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
VEIEDINDHTPKFTQNSFELQISESAQPGTRFIL A DADIG N+LQ Y+LS + FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
I KEK DGSKYPE+ L+ LDRE+Q + L LTALD G PPLS T ++ + VTDANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQI--FSLNSKSGEIT 298
VF++DVYRVSL ENV PGTTVLQV+ATDQDEG+N+EIT+SF QI F LNS +GEIT
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQFDLNSNTGEIT 300
Query: 299 TQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVP 358
LDFEE KEYS+V+E RDGGG++AQCTVE+ + DENDN+PEV F SL +I+E+A
Sbjct: 301 VLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAEL 360
Query: 359 GTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTI 418
GT IAL+K+ D+DS NGEV C+L+G+VPFKI++SS+N+YKLVTD LDREQ PEYN+T+
Sbjct: 361 GTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITV 420
Query: 419 TATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLG 478
TATDRGKPPLSSS S+ LHI DVNDNAPVF Q+SY+V V ENNPPGASI+QV ASD DLG
Sbjct: 421 TATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLG 480
Query: 479 LNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPAL 538
NGQVSY IMASDLE L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSPAL
Sbjct: 481 PNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPAL 540
Query: 539 SANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNA 598
SANVSLRVLV DRNDNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGHNA
Sbjct: 541 SANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNA 600
Query: 599 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL 658
WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATLHL
Sbjct: 601 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHL 660
Query: 659 VFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPA 718
VFADSLQEVLPDITDRP PSD QAELQFYLVVALALISVLFL+A+ILA+ALRLRRSSSPA
Sbjct: 661 VFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPA 720
Query: 719 AWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 778
+WSCFQPGLCVKS VVPPNYS+GTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG
Sbjct: 721 SWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 780
Query: 779 DSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 838
DSSGALFPLCNSSE TSH QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM
Sbjct: 781 DSSGALFPLCNSSELTSHQ--QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 838
Query: 839 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 898
LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA
Sbjct: 839 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 898
Query: 899 AGKRDGKAPAGGNGNKKKSGKKEKK 923
AGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 899 AGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 1371 bits (3549), Expect = 0.0
Identities = 690/930 (74%), Positives = 769/930 (82%), Gaps = 7/930 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V IED+NDH P+F + L+I ESA GTR L+ A D DI +NS++ YK++ NP FSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
+++ DG KYPEL+LEK LDRE+Q H L+LTALDGG PP S T + I V D NDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
VF+RD YR+SL EN+PPG+ VLQV+ATDQDEG+N+EI Y F T Q +FSL+ K+G
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
I + DFE+ + Y+M VE +DGGGL QC V I I DENDNSPE+ SL + ILEN+
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
PG ++AL K D D G NGEV C ++ ++PFKI SSS N YKLVTDG LDREQTPEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TI ATDRGKPPLSSS S+ L++ D+NDNAPVF Q SY+V V ENNPPGASIAQV ASD D
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
LGLNG +SYSI+ASDLEPLA++SYVS+SAQSGVVFAQRAFD+EQLR F LTLQARD GSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGH
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HLVFAD+LQE+LPD++DRPV SDPQAELQFYLVVALALISVLFLLAVILA+ALRLRRS S
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 776
PA W CF PGLCVKSGPVVPPNYS+GTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
Query: 777 CGDSSGALFPLCNSSESTSHPEL---QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 833
C S GAL P + TSHPE QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 781 CSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 840
Query: 834 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 893
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 841 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 900
Query: 894 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 1326 bits (3432), Expect = 0.0
Identities = 685/915 (74%), Positives = 763/915 (83%), Gaps = 8/915 (0%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKPYF 75
VLF FLLSLFC A+ +QIRY IPEE+ GS VG LA DLG SV+ELPTRKLRVS+E YF
Sbjct: 14 VLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-YF 72
Query: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
VS ESG+LLV+ R+DRE+ICG+K CALEFE VAENP+N +HV V I+DIND+ P+F
Sbjct: 73 NVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVA 132
Query: 136 NSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELA 195
+L+I ESA PG +F L+ A+DAD+ NSL+ Y ++ N FSL KE DGSKYP L
Sbjct: 133 KGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLL 192
Query: 196 LEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENV 255
LEK LDRE QS HRL+LTA+DGG PPLSGTT + I+VTDANDN PVF+++VYRVSL+ENV
Sbjct: 193 LEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENV 252
Query: 256 PPGTTVLQVSATDQDEGINSEITYSFYRTG---QIFSLNSKSGEITTQKKLDFEETKEYS 312
P GT+VL+V ATDQDEGIN+EITY+F + +F+LN +G+ITT LDFEET Y
Sbjct: 253 PWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYV 312
Query: 313 MVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDS 372
+ VE +DGG A C V+I I DENDN+PEVTF S I E++ GT+IALIK+ D+DS
Sbjct: 313 LSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDS 372
Query: 373 GENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSI 432
G+NG V C Q EVPFK+ S+SKN YKLV G L+REQT +YNVTI ATD+GKP LSS
Sbjct: 373 GQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRT 432
Query: 433 SVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDL 492
S+ LHI D+NDNAPVFHQASY+V V ENNPPGASIAQV ASD DLG NG+VSYSI+ASDL
Sbjct: 433 SITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDL 492
Query: 493 EPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRN 552
EP L SYVS+S QSGVVFAQRAFD+EQLR FELTLQARDQGSPALSANVSLRVLVGD N
Sbjct: 493 EPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLN 552
Query: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL
Sbjct: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
Query: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDIT 672
FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD++
Sbjct: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLS 672
Query: 673 DRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCVKSG 732
DRP PSDPQ ELQFYLVVALALISVLFLLAVILA+ALRLRRSSS CFQ GLC KSG
Sbjct: 673 DRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSG 732
Query: 733 PVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSS 791
P VPPN+S+GTLPYSYNLC+A H+ KTEFN L + +++ QD+LC D S +
Sbjct: 733 PGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNEDH 792
Query: 792 ESTSHPEL---QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASAS 848
+ P L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASAS
Sbjct: 793 KIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASAS 852
Query: 849 EAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA 908
EAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA
Sbjct: 853 EAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA 912
Query: 909 GGNGNKKKSGKKEKK 923
GGNGNKKKSGKKEKK
Sbjct: 913 GGNGNKKKSGKKEKK 927
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 1319 bits (3414), Expect = 0.0
Identities = 679/939 (72%), Positives = 771/939 (82%), Gaps = 24/939 (2%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
M + +G G L VL FLLSLF AL QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++
Sbjct: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V ++DIND+TP F Q L+I ES +PGT F L+ A D+D+G NSLQ+Y L+ N F L
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
K+ DG KYPEL L+ +LDRE+ S H+LVLTA+DGG PP SGTT++RI+VTDANDNPP
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
VF++DVYRV+LRE+VPPG VLQV+ATD+DEGIN+EITYSF+ + F+LN K+GE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
ITT+ LDFE Y++ +E +D G L A C++++ I D+ND +PEV S+ + E++
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
PGT+IALIK D+DSGENGEV CQ+ G F + SSSKN YKLVTDG LDRE+ PEYN+
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TITATD GKPPLSSSI V LHI DVNDNAPVF Q SY+V V ENNPPGASIAQ+ ASD D
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
LG +GQVSYSI+ASDL+P + SYVS+SAQSGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
ALSANVSLRVLVGD NDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HL+FADSLQEVLPD++DR PSDPQA+LQFYLVVALALISVLF LAVILA++LRLR SS
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
AW CFQPGL K GP V PNYS+GTLPYSYNLCVA + KTEFNFL + +L QD+
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
Query: 776 LCGDSSGALFPLCNSSESTSHPEL-----------QAPPNTDWRFSQAQRPGTSGSQNGD 824
+C ++S ++T+H QAPPNTDWRFSQAQRPGTSGSQNGD
Sbjct: 781 VCDNASW--------EQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGD 832
Query: 825 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 884
DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ
Sbjct: 833 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 892
Query: 885 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 893 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 1316 bits (3407), Expect = 0.0
Identities = 668/798 (83%), Positives = 720/798 (90%), Gaps = 2/798 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
VEIEDINDHTPKFTQNSFELQISESAQPGTRFIL A DADIG N+LQ Y+LS + FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
I KEK DGSKYPE+ L+ LDRE+Q + L LTALD G PPLS T ++ + VTDANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQI--FSLNSKSGEIT 298
VF++DVYRVSL ENV PGTTVLQV+ATDQDEG+N+EIT+SF QI F LNS +GEIT
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQFDLNSNTGEIT 300
Query: 299 TQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVP 358
LDFEE KEYS+V+E RDGGG++AQCTVE+ + DENDN+PEV F SL +I+E+A
Sbjct: 301 VLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAEL 360
Query: 359 GTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTI 418
GT IAL+K+ D+DS NGEV C+L+G+VPFKI++SS+N+YKLVTD LDREQ PEYN+T+
Sbjct: 361 GTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITV 420
Query: 419 TATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLG 478
TATDRGKPPLSSS S+ LHI DVNDNAPVF Q+SY+V V ENNPPGASI+QV ASD DLG
Sbjct: 421 TATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLG 480
Query: 479 LNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPAL 538
NGQVSY IMASDLE L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSPAL
Sbjct: 481 PNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPAL 540
Query: 539 SANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNA 598
SANVSLRVLV DRNDNAPRVLYPALGPDGSALFDMVP AAEPGYLVTKVVAVDADSGHNA
Sbjct: 541 SANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNA 600
Query: 599 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL 658
WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDA RQRLLVAVRDGGQPPLSATATLHL
Sbjct: 601 WLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHL 660
Query: 659 VFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPA 718
VFADSLQEVLPDITDRP PSD QAELQFYLVVALALISVLFL+A+ILA+ALRLRRSSSPA
Sbjct: 661 VFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPA 720
Query: 719 AWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 778
+WSCFQPGLCVKS VVPPNYS+GTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG
Sbjct: 721 SWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCG 780
Query: 779 DSSGALFPLCNSSESTSH 796
DSSGALFPLCNSSE TSH
Sbjct: 781 DSSGALFPLCNSSELTSH 798
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1306 bits (3380), Expect = 0.0
Identities = 674/929 (72%), Positives = 754/929 (81%), Gaps = 6/929 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG + RA VLF LL LF P LCE IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
+ R+LRVS+EK +F+V A+SG+LLV R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V IED+NDH P+F ++ L+ISES G ILE AED DI +NSL KY+LS N FSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
+ K+ DG KYPEL L+KTLDRE QS H LVLTALDGG PP SGT ++RI V DANDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGE 296
VF++DVYRVSLRE+VPPGT++L+V ATDQDEGINSEITYSF+ + +FSL+ +G
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
I TQ+ LDFEE + Y++ +E +D G L +C V + + DENDNSPE+ SL + I+E++
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
PG ++AL K DQDSGENGEV C L VPFKI SSS N YKLVTD LDREQTPEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TI ATDRGKPPLSSS ++ LHI DVNDNAPVF Q++YLV VPENN PGASIAQV ASD D
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
GLNG+VSYS++ASDLE L+SYVS+SAQSGVVFAQRAFD+EQLRTFELTLQARDQGSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HLVFADSLQEVLPD +D P PSD QAE+QFYLVVALALISVLFLLAVILA+ALRLR+S S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDI 775
P A CF+ LC KSGPV PPNYS+GTLPY+YN CV EFNF + + QD
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
Query: 776 LCGDSSGALFPLCNSSESTSH-PELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 834
L DS L S E+ + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 781 LNKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 840
Query: 835 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 894
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 841 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 900
Query: 895 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1286 bits (3327), Expect = 0.0
Identities = 663/937 (70%), Positives = 757/937 (80%), Gaps = 22/937 (2%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V I+DIND+ P F+QN EL+ISE A G F LE A+D D+G+NSLQ+Y LS +P FSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
I KE DGS+YPEL L+ LDRE+Q +H LVLTA+DGG P S TT++R+ V DANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG----QIFSLNSKSGE 296
VF +D+YRV++ EN+P G++VL+V A D DEGIN+EI Y+F G Q+F L+SK+GE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
+TT +LDFEE Y++ VE +DGG A C V+I+I DENDN+PE+T S + I E+A
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
GT +ALIK HD DSG NGE+ CQL+G PFKI+ +KN+Y+LVTDG LDREQ PEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TITATD+G PPLSSS ++ LHI DVNDN PVFHQASY V V ENNPPGASIA V ASD D
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
LG NG VSY I+ASDLEP L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HL+FADSLQE+ PD++DRP PSDPQAELQF+LVVALALISVLFLLAVILA++LRLR SS
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
PA FQPG+C K+ P V P YS+ TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 776 LCGDSSGALFPLCNSSESTSHPEL---------QAPPNTDWRFSQAQRPGTSGSQNGDDT 826
LC ++S ES +PE+ QAPPNTDWRFSQAQRPGTSGSQNGDDT
Sbjct: 781 LCDEASW--------FESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDT 832
Query: 827 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 886
GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV
Sbjct: 833 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 892
Query: 887 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 893 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 1123 bits (2904), Expect = 0.0
Identities = 566/802 (70%), Positives = 645/802 (80%), Gaps = 4/802 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG + RA VLF LL LF P L E IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
+ RKLRVS+EK +F+V AESG+LLV +R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V IED+NDH P+F + L+I ESA GTR L+ A D DI +NS++ YK++ NP FSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
+++ DG KYPEL+LEK LDRE+Q H L+LTALDGG PP S T + I V D NDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
VF+RD YR+SL EN+PPG+ VLQV+ATDQDEG+N+EI Y F T Q +FSL+ K+G
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
I + DFE+ + Y+M VE +DGGGL QC V I I DENDNSPE+ SL + ILEN+
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
PG ++AL K D D G NGEV C ++ ++PFKI SSS N YKLVTDG LDREQTPEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TI ATDRGKPPLSSS S+ L++ D+NDNAPVF Q SY+V V ENNPPGASIAQV ASD D
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
LGLNG +SYSI+ASDLEPLA++SYVS+SAQSGVVFAQRAFD+EQLR F LTLQARD GSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
LSANVSLRVLVGDRNDNAPRVLYPALGPDGSA FDMVPR+AEPGYLVTKVVAVDADSGH
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HLVFAD+LQE+LPD++DRPV SDPQAELQFYLVVALALISVLFLLAVILA+ALRLRRS S
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDIL 776
PA W CF PGLCVKSGPVVPPNYS+GTLPYSYNLC+AHTG EFNFLKCS L S +D++
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV 780
Query: 777 CGDSSGALFPLCNSSESTSHPE 798
C S GAL P + TSHPE
Sbjct: 781 CSVSPGALIPPHGGEDLTSHPE 802
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 1080 bits (2792), Expect = 0.0
Identities = 562/781 (71%), Positives = 640/781 (81%), Gaps = 8/781 (1%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKPYF 75
VLF FLLSLFC A+ +QIRY IPEE+ GS VG LA DLG SV+ELPTRKLRVS+E YF
Sbjct: 14 VLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-YF 72
Query: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
VS ESG+LLV+ R+DRE+ICG+K CALEFE VAENP+N +HV V I+DIND+ P+F
Sbjct: 73 NVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVA 132
Query: 136 NSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELA 195
+L+I ESA PG +F L+ A+DAD+ NSL+ Y ++ N FSL KE DGSKYP L
Sbjct: 133 KGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLL 192
Query: 196 LEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENV 255
LEK LDRE QS HRL+LTA+DGG PPLSGTT + I+VTDANDN PVF+++VYRVSL+ENV
Sbjct: 193 LEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENV 252
Query: 256 PPGTTVLQVSATDQDEGINSEITYSFYRTG---QIFSLNSKSGEITTQKKLDFEETKEYS 312
P GT+VL+V ATDQDEGIN+EITY+F + +F+LN +G+ITT LDFEET Y
Sbjct: 253 PWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYV 312
Query: 313 MVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDS 372
+ VE +DGG A C V+I I DENDN+PEVTF S I E++ GT+IALIK+ D+DS
Sbjct: 313 LSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDS 372
Query: 373 GENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSI 432
G+NG V C Q EVPFK+ S+SKN YKLV G L+REQT +YNVTI ATD+GKP LSS
Sbjct: 373 GQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRT 432
Query: 433 SVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDL 492
S+ LHI D+NDNAPVFHQASY+V V ENNPPGASIAQV ASD DLG NG+VSYSI+ASDL
Sbjct: 433 SITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDL 492
Query: 493 EPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRN 552
EP L SYVS+S QSGVVFAQRAFD+EQLR FELTLQARDQGSPALSANVSLRVLVGD N
Sbjct: 493 EPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLN 552
Query: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL
Sbjct: 553 DNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGL 612
Query: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDIT 672
FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHL+FADSLQEVLPD++
Sbjct: 613 FSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLS 672
Query: 673 DRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCVKSG 732
DRP PSDPQ ELQFYLVVALALISVLFLLAVILA+ALRLRRSSS CFQ GLC KSG
Sbjct: 673 DRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSG 732
Query: 733 PVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCNSS 791
P VPPN+S+GTLPYSYNLC+A H+ KTEFN L + +++ QD+LC D S +C S+
Sbjct: 733 PGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPS---MVVCASN 789
Query: 792 E 792
E
Sbjct: 790 E 790
>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
[Homo sapiens]
Length = 811
Score = 1077 bits (2784), Expect = 0.0
Identities = 553/786 (70%), Positives = 642/786 (81%), Gaps = 5/786 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
M + +G G L VL FLLSLF AL QIRY IPEE+ K SVVGNLA DLG SV++
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LP RKLRVS+EK YFTV+ ESG+LLVS R+DRE+ICGK+P C L+F+ VAENPLN +++
Sbjct: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V ++DIND+TP F Q L+I ES +PGT F L+ A D+D+G NSLQ+Y L+ N F L
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
K+ DG KYPEL L+ +LDRE+ S H+LVLTA+DGG PP SGTT++RI+VTDANDNPP
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGE 296
VF++DVYRV+LRE+VPPG VLQV+ATD+DEGIN+EITYSF+ + F+LN K+GE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
ITT+ LDFE Y++ +E +D G L A C++++ I D+ND +PEV S+ + E++
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
PGT+IALIK D+DSGENGEV CQ+ G F + SSSKN YKLVTDG LDRE+ PEYN+
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TITATD GKPPLSSSI V LHI DVNDNAPVF Q SY+V V ENNPPGASIAQ+ ASD D
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
LG +GQVSYSI+ASDL+P + SYVS+SAQSGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
ALSANVSLRVLVGD NDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HL+FADSLQEVLPD++DR PSDPQA+LQFYLVVALALISVLF LAVILA++LRLR SS
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
AW CFQPGL K GP V PNYS+GTLPYSYNLCVA + KTEFNFL + +L QD+
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
Query: 776 LCGDSS 781
+C ++S
Sbjct: 781 VCDNAS 786
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 1060 bits (2741), Expect = 0.0
Identities = 547/785 (69%), Positives = 625/785 (79%), Gaps = 5/785 (0%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG + RA VLF LL LF P LCE IRY IPEE+ KGSVVGNLA DLG SV +
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
+ R+LRVS+EK +F+V A+SG+LLV R+DRE+IC ++ C L+ EAV ENPLN +HV
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V IED+NDH P+F ++ L+ISES G ILE AED DI +NSL KY+LS N FSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
+ K+ DG KYPEL L+KTLDRE QS H LVLTALDGG PP SGT ++RI V DANDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGE 296
VF++DVYRVSLRE+VPPGT++L+V ATDQDEGINSEITYSF+ + +FSL+ +G
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
I TQ+ LDFEE + Y++ +E +D G L +C V + + DENDNSPE+ SL + I+E++
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
PG ++AL K DQDSGENGEV C L VPFKI SSS N YKLVTD LDREQTPEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TI ATDRGKPPLSSS ++ LHI DVNDNAPVF Q++YLV VPENN PGASIAQV ASD D
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
GLNG+VSYS++ASDLE L+SYVS+SAQSGVVFAQRAFD+EQLRTFELTLQARDQGSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFD VPRAA+PGYLVTKVVAVDADSGH
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYHV+QASEPGLFSLGLRTGEVR RALGD+D+ RQRLLVAVRDGGQPPLSATATL
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HLVFADSLQEVLPD +D P PSD QAE+QFYLVVALALISVLFLLAVILA+ALRLR+S S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDI 775
P A CF+ LC KSGPV PPNYS+GTLPY+YN CV EFNF + + QD
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
Query: 776 LCGDS 780
L DS
Sbjct: 781 LNKDS 785
>gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precursor
[Homo sapiens]
Length = 814
Score = 1039 bits (2687), Expect = 0.0
Identities = 539/804 (67%), Positives = 633/804 (78%), Gaps = 13/804 (1%)
Query: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
V I+DIND+ P F+QN EL+ISE A G F LE A+D D+G+NSLQ+Y LS +P FSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
I KE DGS+YPEL L+ LDRE+Q +H LVLTA+DGG P S TT++R+ V DANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG----QIFSLNSKSGE 296
VF +D+YRV++ EN+P G++VL+V A D DEGIN+EI Y+F G Q+F L+SK+GE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
+TT +LDFEE Y++ VE +DGG A C V+I+I DENDN+PE+T S + I E+A
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
GT +ALIK HD DSG NGE+ CQL+G PFKI+ +KN+Y+LVTDG LDREQ PEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
TITATD+G PPLSSS ++ LHI DVNDN PVFHQASY V V ENNPPGASIA V ASD D
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
LG NG VSY I+ASDLEP L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
HL+FADSLQE+ PD++DRP PSDPQAELQF+LVVALALISVLFLLAVILA++LRLR SS
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
PA FQPG+C K+ P V P YS+ TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 776 LCGDSSGALFPLCNSSESTSHPEL 799
LC ++S ES +PE+
Sbjct: 781 LCDEASW--------FESNDNPEM 796
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 940 bits (2429), Expect = 0.0
Identities = 508/941 (53%), Positives = 635/941 (67%), Gaps = 35/941 (3%)
Query: 2 GSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQEL 61
G G GEL +L LL C QIRY +PEE+ KGS VGN+A DLG QEL
Sbjct: 7 GWGCGEL-------LLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQEL 59
Query: 62 PTRKLRVSSE--KPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHV 119
R +R+ S F ++ SG L+ + R+DREE+C + P C + F + EN + Y V
Sbjct: 60 AERGVRIVSRGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGV 119
Query: 120 NVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFS 179
VEI DIND+ P+F +++++E+A GTR +L A DAD+G+NSL+ Y+LS N FS
Sbjct: 120 EVEIIDINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFS 179
Query: 180 LIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNP 239
L + DG KYPEL LE+ LDRE+++ H L+LTALDGG P LSGTT +R+ V DANDN
Sbjct: 180 LDVVSGTDGQKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNA 239
Query: 240 PVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSG 295
P+F Y VS+ EN+P GT +L ++ATD DEGIN ++TYSF + + F L+S G
Sbjct: 240 PLFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLG 299
Query: 296 EITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILEN 355
EI+T + LD+EE++ Y M V +DGG LVA V + +QD NDN+PEV SL I E+
Sbjct: 300 EISTLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISED 359
Query: 356 AVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYN 415
+PGT+IAL +HD DSGENGE+ C + +PFK+ S N Y L+T LDRE+T +YN
Sbjct: 360 CLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYN 419
Query: 416 VTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDL 475
+T+T D G PPLS+ + L + DVNDN P F QASY SV ENNP G SI V A D
Sbjct: 420 ITLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDP 479
Query: 476 DLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGS 535
D G N +V+YS+ + L+SYVS+++ +GV++A R+FDYEQLR +L + A D G+
Sbjct: 480 DSGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGN 539
Query: 536 PALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSG 595
P LS+NVSL + V D+NDN P +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG
Sbjct: 540 PPLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 599
Query: 596 HNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATAT 655
NAWLSY +L+ASEPGLF++GL TGEVRTARAL DRDA +Q L+VAV D GQPPLSAT T
Sbjct: 600 QNAWLSYRLLKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFT 659
Query: 656 LHLVFADSLQEVLPDITDRPVPSDPQ-AELQFYLVVALALISVLFLLAVILAVALRLRRS 714
+ + AD + ++L D+ P DP+ +L YLVVA+A +S +FL VI+ + LRLRR
Sbjct: 660 VTVAVADRIPDILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRW 719
Query: 715 SSPAAWSCFQPGLCVKSGPVVPPNYSQGT-------LPYSYNLCV-AHTGKTEFNFLKCS 766
L VP ++ G YS+ + + A + K+ F
Sbjct: 720 HKSRLLQAEGSRLAG-----VPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF---- 770
Query: 767 EQLSSGQDILCGDSSGALFPLCNSSESTSHPE----LQAPPNTDWRFSQAQRPGTSGSQN 822
Q + +L +S PL S + ++ E QAPPNTDWRFSQAQRPGTSGSQN
Sbjct: 771 PQPNYADTLLSEESCEKSEPLLMSDKVDANKEERRVQQAPPNTDWRFSQAQRPGTSGSQN 830
Query: 823 GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY 882
GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY
Sbjct: 831 GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY 890
Query: 883 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 891 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 933 bits (2412), Expect = 0.0
Identities = 500/933 (53%), Positives = 637/933 (68%), Gaps = 23/933 (2%)
Query: 9 GRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRV 68
G RL +L L QIRY +PEE KGS VGN++ DLG +EL R +R+
Sbjct: 8 GDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRI 67
Query: 69 SS--EKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDI 126
S + F V+ SG L+ + R+DREE+C +C L E + E+ L Y V VEI DI
Sbjct: 68 VSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDI 127
Query: 127 NDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQ 186
ND+ P F ++ E+++SE A PG RF L A D D+G+NSLQ Y+LS N FSL ++ +
Sbjct: 128 NDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRT 187
Query: 187 DGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDV 246
DG+K PEL LE +LDRE+++ H L+LTALDGG P G +R+ V D ND+ P+F + V
Sbjct: 188 DGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSV 247
Query: 247 YRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGEITTQKK 302
YRVS+ EN+ GT VL V+ATD DEGIN E+ YSF + +IF L+S++GE+ +
Sbjct: 248 YRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRGS 307
Query: 303 LDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLI 362
LDFE+ + Y M ++G+DGGGL T+ I + D NDN+PE+T S + ILEN+ PGT+I
Sbjct: 308 LDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVI 367
Query: 363 ALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATD 422
AL+ + DQDSGENG+V+C + +PFK+ + N YKL+T LDRE YN+T+TATD
Sbjct: 368 ALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATD 427
Query: 423 RGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQ 482
+G PPLS+ V L++ D NDN PVF +SY +PENNP GASI V A D D N
Sbjct: 428 QGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNAL 487
Query: 483 VSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANV 542
V+YS+ ++ + L+SYVS+++ +GV++A ++FDYEQ R EL + ARD G P LS+NV
Sbjct: 488 VTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNV 547
Query: 543 SLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSY 602
SL + V D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY
Sbjct: 548 SLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSY 607
Query: 603 HVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFAD 662
+L+ASEPGLF++G TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD
Sbjct: 608 RLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVAD 667
Query: 663 SLQEVLPDITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWS 721
S+ EVL D+ + + ++L YLVVA+A +S +FL+ VI+ +ALRL R
Sbjct: 668 SIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQ 727
Query: 722 CFQPGLC-VKSGPVVPPNYSQGTL-PYSYNL-CVAHTGKTEFNF--------LKCSEQLS 770
+ GL + + V + Q L YS+ + +A + K+ F L E
Sbjct: 728 ASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCE 787
Query: 771 SGQDILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 830
+ +L + S + C+ + + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 788 KSEPLLIAEDSAIILGKCDPTSNQ-----QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 842
Query: 831 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 890
NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 843 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 902
Query: 891 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 903 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 931 bits (2407), Expect = 0.0
Identities = 497/921 (53%), Positives = 626/921 (67%), Gaps = 16/921 (1%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
+L L L A I Y +PEE KGS VGN+A DLG QEL +R+ S P
Sbjct: 14 MLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGRMP 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F ++ SG L+ + R+DREE+C + C + F + E+ + + V VEI DIND+TP+F
Sbjct: 74 LFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
E +++E PGTR L +D D+G+NSLQ Y+LS NP FSL +++ DG ++PE
Sbjct: 134 QLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
+ L+ LDRE+++ H L+LTA DGG P SGT + IQV DANDNPP F + Y +++ E
Sbjct: 194 MVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVPE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGEITTQKKLDFEETK 309
NVP GT +L V+ATD DEG N E+TYSF+ R QIF L+S +GEI+ ++ LDFEE K
Sbjct: 254 NVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEEYK 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
YSM V+ +DG GL+A+ V I + D NDN+PEVT S+ + EN PGT+IALI +HD
Sbjct: 314 MYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVHD 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
QDSG+NG C + G +PFK+ N Y+LVT+ TLDRE YN+TITA D+G P LS
Sbjct: 374 QDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPALS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ + L + D+NDN+PVFHQ SY +PENNP GASI V A DLD N Q++YS++
Sbjct: 434 TETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLIE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
++ L++Y+S+++ +GV++A R+FDYEQ R +L + ARD G P LS+NVSL + +
Sbjct: 494 DTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFLL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDNAP +LYPAL DGS ++ P +AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDILA 673
Query: 670 DITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLC 728
D+ P ++L YLVVA A +S +FL VI+ +A RLRR GL
Sbjct: 674 DLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLA 733
Query: 729 VKSGP--VVPPNYSQGTLPYSYNLCV-AHTGKTEFNFLK--CSEQLSSGQDILCGDSSGA 783
G V YS+ + + A + K+ F + ++ L S + + G
Sbjct: 734 SMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESC---EKKGF 790
Query: 784 LFPLCNSSESTSHP-ELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAM 842
L + E P QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAM
Sbjct: 791 LSAPQSLLEDKKEPFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAM 850
Query: 843 ILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKR 902
ILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKR
Sbjct: 851 ILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKR 910
Query: 903 DGKAPAGGNGNKKKSGKKEKK 923
DGKAPAGGNGNKKKSGKKEKK
Sbjct: 911 DGKAPAGGNGNKKKSGKKEKK 931
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 923 bits (2386), Expect = 0.0
Identities = 500/933 (53%), Positives = 626/933 (67%), Gaps = 39/933 (4%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRV--SSEKP 73
VL LL C QIRY +PEE+ KGS VG+++ DLG +EL R +R+
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F ++ SG L+ + R+DREE+C C L + + E+ + Y V VE+ DIND+ P F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
++ E++ISE+A RF L A D DIG NSLQ Y+LS N FSLI++ DGSKYPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
L L++ LDRE+++ H LVLTA DGG P +GT +R+ V DANDN P F + YR S+ E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSGEITTQKKLDFEETK 309
N+ GT +L V+ATD DEG+N+E+ YSF + Q+F L+ SG I+T +LD EE+
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
Y M V+ D G A+ V I + D NDN+PEV SL + EN+ GTLIAL+ ++D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
QDS ENG+V C +QG +PFK+ S N Y LVTD LDREQ P YN+T+TATDRG PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ + L++ D NDN PVF QASY +PENNP G S+ V A D D N Q++YS+
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
+ ++ +L+SYVS+++ +GV++A +FDYEQ R ++ + ARD G P LS+NVSL + V
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ +VL
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673
Query: 670 DITDRPVPSDPQ-AELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLC 728
D+ P++ + ++L YLVVA+A +S +FL VIL +ALRLRR GL
Sbjct: 674 DLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGGGLT 733
Query: 729 -VKSGPVVPPNYSQGTL-PYSYNLCVAHTGK----------------TEFNFLKCSEQLS 770
+ V + Q L YS+ + + + ++ +F K L
Sbjct: 734 GAPASHFVGVDGVQAFLQTYSHEVSLTTDSRKSHLIFPQPNYADMLVSQESFEKSEPLLL 793
Query: 771 SGQDILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 830
SG + DS G + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 794 SGDSVFSKDSHGLI--------------EQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 839
Query: 831 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 890
NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 840 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 899
Query: 891 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 900 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 922 bits (2384), Expect = 0.0
Identities = 492/929 (52%), Positives = 628/929 (67%), Gaps = 31/929 (3%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
VL LL + A QIRY +PEE KG +VGN++ DL +EL R++R+ S
Sbjct: 14 VLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGRTQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F+++ SG L+ + R+DREE+C + P C + F+ + E+ + Y + +E+ DIND PKF
Sbjct: 74 LFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAPKF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
S E++I+E A PG R+ L A D D+G+NSLQ Y+LS N FSL ++ +G+ PE
Sbjct: 134 QAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
L LE+ LDRE+ + H LVLTA DGG P S T + + V D NDN PVF + +YRV + E
Sbjct: 194 LVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVLE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFYRTGQ----IFSLNSKSGEITTQKKLDFEETK 309
NVPPGT +L +A+D DEGIN ++ Y F++ + +F LN +GEI+T K LD+EE
Sbjct: 254 NVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEECS 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
Y M ++ DGGGL V I+++D NDN PEVT SL + E+A GT+I L HD
Sbjct: 314 FYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAHD 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
+DSG+NG+V C +Q + F + +S ++ Y+L+T LDRE+ EYN+T+TATDRG PPLS
Sbjct: 374 RDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPLS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ I + L + D+NDN P F QASY V +PENN G SI V A D D N +V YS+
Sbjct: 434 TEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLAE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
++ L++YVS+++ +GV++A +FDYEQ R ++ + A D GSP LS+NVSLR+ V
Sbjct: 494 DTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFVL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY + +ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDILA 673
Query: 670 DITDRPVPSDPQA-ELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLC 728
D+ +P+D +A +L YLVVA+A++S +FL VI +ALRLR S GL
Sbjct: 674 DLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATSDGLA 733
Query: 729 VKSGPVVPPNYSQG---------TLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGD 779
VP ++ G T ++L A + K+ F Q + ++
Sbjct: 734 -----GVPTSHFVGVDGVRAFLQTYSQEFSL-TADSRKSHLIF----PQPNYADTLISQQ 783
Query: 780 SSGALFPLCNSSESTSHPE-----LQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 834
S PLC S +S E QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 784 SCEKNEPLCVSVDSKFPIEDTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 843
Query: 835 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 894
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 844 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 903
Query: 895 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 904 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 919 bits (2376), Expect = 0.0
Identities = 500/920 (54%), Positives = 624/920 (67%), Gaps = 13/920 (1%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
VL L LL A QIRY IPEE+ KGS VGN+ DLG QEL +R+ S
Sbjct: 14 VLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRMQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F+++ +G L+ + R+DREE+C + P C + F + E+ LN Y V VEI DIND+TP+F
Sbjct: 74 LFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPRF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
+ E++I E+A P +RF L D D+G+NSLQ +KLS N FS+ ++ + G KYPE
Sbjct: 134 LKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
L LE TLDRE ++ +RLVLTA+DGG P S ++ + V D NDN P+F + VYRVS+ E
Sbjct: 194 LVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVPE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFYRT----GQIFSLNSKSGEITTQKKLDFEETK 309
N+P GT VL V+ATDQDEG++ E+TYSF + QIF LN +GEI+T LD+E++
Sbjct: 254 NLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSANLDYEDSS 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
Y + VE RDG GL + V I I D NDN PEV S I E+A PGT+IAL ++ D
Sbjct: 314 FYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVFD 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
+DSG NG V C + +PF++ S N Y+LVT+ LDRE+ YN+T+TATD+G PPLS
Sbjct: 374 RDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPLS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ + L++ D NDN P F +SY V V ENNP GASI V A D D+ N QVSYS+
Sbjct: 434 TETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLAE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
L+ L+SYVS+++ +G+++A R+FDYEQLR +L + A D G P LS+NVSL + V
Sbjct: 494 DTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFVL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILA 673
Query: 670 DITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLC 728
D+ P ++L YLVVA+A +S +FL VI+ +ALRL+R GL
Sbjct: 674 DLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLLQASGGGLA 733
Query: 729 VKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLC 788
G +Y+ V+ T + + L Q + ++ +S PL
Sbjct: 734 SMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHL-IFPQPNYADTLINQESYEKSEPLL 792
Query: 789 NSS---ESTSHPE--LQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI 843
+ E+ P QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI
Sbjct: 793 ITQDLLETKGEPRQLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMI 852
Query: 844 LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD 903
LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD
Sbjct: 853 LASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD 912
Query: 904 GKAPAGGNGNKKKSGKKEKK 923
GKAPAGGNGNKKKSGKKEKK
Sbjct: 913 GKAPAGGNGNKKKSGKKEKK 932
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 909 bits (2350), Expect = 0.0
Identities = 480/919 (52%), Positives = 619/919 (67%), Gaps = 13/919 (1%)
Query: 17 LFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPY 74
L LL C QIRY + EE+ KGS VGN+A DLG +EL R +R+ S
Sbjct: 15 LLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQL 74
Query: 75 FTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFT 134
F+++ +SG L+ + R+DREE+C + P C ++ + E+ L + V +EI+DIND+ P F
Sbjct: 75 FSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFP 134
Query: 135 QNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPEL 194
E++I E PGTRF ++ A D D+G+NSLQ YKLS N FSL + +G+KYPEL
Sbjct: 135 TEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPEL 194
Query: 195 ALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLREN 254
LE+ LDRE++ H+LVL A DGG P SG +++ V DANDNPP+F + YRVS+ EN
Sbjct: 195 VLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWEN 254
Query: 255 VPPGTTVLQVSATDQDEGINSEITYSFYRT----GQIFSLNSKSGEITTQKKLDFEETKE 310
VP GT +L V+ATD DEG N++++Y + +IF LNS SGE++ K LD+E+
Sbjct: 255 VPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMF 314
Query: 311 YSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQ 370
Y + +E +DG GL+++ + + + D NDN+PE+T SL + E G IALI +HD+
Sbjct: 315 YEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDR 374
Query: 371 DSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSS 430
DSG+NG+V + G +PFK+ S Y+LVT +LDREQ EYN+++ A+D G PPLS+
Sbjct: 375 DSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLST 434
Query: 431 SISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMAS 490
+ LH+ D+NDN P F SY +PENNP GASI V A D D N +++Y++
Sbjct: 435 ETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTED 494
Query: 491 DLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGD 550
L+ L+S+VS+++ +GV++A R+FDYEQ R +L + A D G+P LS+NVSL + V D
Sbjct: 495 TLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLD 554
Query: 551 RNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASEP
Sbjct: 555 QNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEP 614
Query: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPD 670
GLFS+GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + AD + ++L D
Sbjct: 615 GLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILAD 674
Query: 671 ITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCV 729
+ P ++L YLVVA+A +S +FL VI+ +ALRLRR GL
Sbjct: 675 LGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASGGGLAS 734
Query: 730 KSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPLCN 789
G +Y+ V+ T + + L Q + ++ +S PL
Sbjct: 735 TPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHL-IFPQPNYADTLISQESCEKSEPLLI 793
Query: 790 SSE-----STSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMIL 844
+ + S+ QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMIL
Sbjct: 794 TQDLLEMKGDSNLLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMIL 853
Query: 845 ASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG 904
ASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG
Sbjct: 854 ASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG 913
Query: 905 KAPAGGNGNKKKSGKKEKK 923
KAPAGGNGNKKKSGKKEKK
Sbjct: 914 KAPAGGNGNKKKSGKKEKK 932
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 900 bits (2326), Expect = 0.0
Identities = 485/922 (52%), Positives = 615/922 (66%), Gaps = 28/922 (3%)
Query: 21 LLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPYFTVS 78
LL + EQI Y + EE +GSVVGN+A DLG + +EL R +R+ S F ++
Sbjct: 19 LLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALN 78
Query: 79 AESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSF 138
SG L+ + R+DREE+C + P C E + E+ + V VEI D+ND+ P F
Sbjct: 79 PRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQR 138
Query: 139 ELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELALEK 198
E++++E+ PG RF L A D D+G+NSLQ Y+L+ N FSL ++ DG KYPEL LE+
Sbjct: 139 EIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLER 198
Query: 199 TLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPG 258
LDRE+++ H LVLTA DGG P SGT + I + D NDN PVF + Y VS+RENVP G
Sbjct: 199 ALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPVG 258
Query: 259 TTVLQVSATDQDEGINSEITYSFYRT----GQIFSLNSKSGEITTQKKLDFEETKEYSMV 314
T +L V ATD DEG N ++TYSF + Q+F LNS SG+IT LD+E++ Y +
Sbjct: 259 TRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDID 318
Query: 315 VEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDSGE 374
VE DG GL A+ V + + DENDN+PEVT SL + E++ PGT+IAL +HD DSG
Sbjct: 319 VEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGG 378
Query: 375 NGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSISV 434
NG V C + +PF + + N Y+L+T TLDRE+ EYN+T+TATD+G PPLS+ +
Sbjct: 379 NGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHI 438
Query: 435 ILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDLEP 494
L + D+NDN P F ASY +PENNP GASI + A D D G N +++YS+ +
Sbjct: 439 SLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQG 498
Query: 495 LALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDN 554
L+SYVS+++ +G+++A +FDYEQ R +L + A D G P LS+NVSL + V D+NDN
Sbjct: 499 APLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDN 558
Query: 555 APRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFS 614
P +LYP DGS ++ PR+A+ GYLVTKVVAVD DSG NAWLSY +L++SEPGLF+
Sbjct: 559 VPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLFA 618
Query: 615 LGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDR 674
+GL TGEVRTARAL DRDA +QRL+V V+D GQPPLSAT TL + ADS+ +VL D+
Sbjct: 619 VGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGSL 678
Query: 675 PVPSDP-QAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCVKSGP 733
+DP + L YLVVA+A +S +FL V + +AL+LRR L
Sbjct: 679 KPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRLA----- 733
Query: 734 VVPPNYSQGT-------LPYSYNLCV-AHTGKTEFNFLKCSEQLSSGQDILCGDSSGALF 785
VP ++ G YS+ + + A + K+ F Q S ++ +S
Sbjct: 734 GVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF----SQPSYADTLISRESCEKSE 789
Query: 786 PLCNSS---ESTSHPEL-QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 841
PL + E+ P L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA
Sbjct: 790 PLLITQDLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 849
Query: 842 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 901
MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
Sbjct: 850 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 909
Query: 902 RDGKAPAGGNGNKKKSGKKEKK 923
RDGKAPAGGNGNKKKSGKKEKK
Sbjct: 910 RDGKAPAGGNGNKKKSGKKEKK 931
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 896 bits (2316), Expect = 0.0
Identities = 481/922 (52%), Positives = 623/922 (67%), Gaps = 17/922 (1%)
Query: 16 VLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
VL FLL+ A QIRY + EE+ +GS VGN+A DLG L + +R+ S
Sbjct: 14 VLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRGRSQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F ++ SG L+ ++R+DREE+C + C L F + E+ L Y V VEI DIND+ P+F
Sbjct: 74 LFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAPRF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
EL+ISE+ PG R L+ A DAD+G N+LQKY L+ N FSL ++ DG+KYPE
Sbjct: 134 GVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKYPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
L LE++LDRE+++ H LVL A DGG P LSGT+ + ++V DANDN PVF + YR+S+ E
Sbjct: 194 LVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFYR----TGQIFSLNSKSGEITTQKKLDFEETK 309
N GT +L V+ATD DEG +++ Y + T ++F L S SGE+T K LD+E+
Sbjct: 254 NTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDAT 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
+ + +E +DG GL+ + V + + D NDN+PE S + E+++PGT+I L +HD
Sbjct: 314 FHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHD 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
+DSG+N C L ++PFK+ S N Y+LVT LDREQ YN+T+TA D G P LS
Sbjct: 374 RDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSLS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ ++L + D+NDNAP F + SY +PENNP GAS+ V A D D N V+YS
Sbjct: 434 TDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFAE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
++ L+SY+S+++ +GV++A R+FDYEQLR ++ + ARD G+P LS+NVSL + V
Sbjct: 494 DTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDNAP +LYPA DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSYH+L+ASE
Sbjct: 554 DQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLFS+GL TGEVRTARAL DRDA +Q L+VA++D GQPPLSAT TL + AD + ++L
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDILA 673
Query: 670 D---ITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPG 726
D + +P+D ++L YLVVA+A +S +FL VI+ +A RLRR
Sbjct: 674 DLGSLEPSAIPND--SDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGS 731
Query: 727 LC-VKSGPVVPPNYSQGTL-PYSYNLCV-AHTGKTEFNFLK--CSEQLSSGQDILCGDSS 781
L ++S V + + L YS+ + + A + K+ F + ++ L S + D
Sbjct: 732 LTGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKDFL 791
Query: 782 GALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 841
A L + + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA
Sbjct: 792 SAPQSLLEEEREETFSQ-QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 850
Query: 842 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 901
MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
Sbjct: 851 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 910
Query: 902 RDGKAPAGGNGNKKKSGKKEKK 923
RDGKAPAGGNGNKKKSGKKEKK
Sbjct: 911 RDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 895 bits (2313), Expect = 0.0
Identities = 481/921 (52%), Positives = 617/921 (66%), Gaps = 17/921 (1%)
Query: 19 LFLLSLFC----PALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--K 72
L LL LF A QI Y IPEE+ KGS VGN++ DLG + +EL R +R+ S
Sbjct: 17 LVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVSRGRT 76
Query: 73 PYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPK 132
F+++ SG L+ + R+DREE+C + C + F + E+ + + + +E+ DIND+ PK
Sbjct: 77 QLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPK 136
Query: 133 FTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYP 192
F + +++I+E+ G RF L A D D+G+NSLQ Y+LS N FSL ++ + +G KYP
Sbjct: 137 FQAENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYP 196
Query: 193 ELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLR 252
EL LE +LDRE+++ H LVLTA DGG P SGT + + V DANDN PVF YRVS+
Sbjct: 197 ELVLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVP 256
Query: 253 ENVPPGTTVLQVSATDQDEGINSEITYSFYRTGQI----FSLNSKSGEITTQKKLDFEET 308
EN+P GT +L V+ATD+DEG N E+TYSF + F LN +GEI + LD+EET
Sbjct: 257 ENLPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISENLDYEET 316
Query: 309 KEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIH 368
Y + ++ DGG +A V I ++D NDNSPE+T SL + E++ GT++AL+ +H
Sbjct: 317 GFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVALLNVH 376
Query: 369 DQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPL 428
D DS +NG+V C + +PFK+ S + Y+LV LDREQ YN+T+TATD G PPL
Sbjct: 377 DLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGGSPPL 436
Query: 429 SSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIM 488
S+ +L + D+NDN P F Q SY +PENN GASI V A D D N Q+ YS+
Sbjct: 437 STEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSLA 496
Query: 489 ASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLV 548
++ + L+SY+S+++ +GV++A R+FDYEQ ++ + A D G P LS+NVSL + V
Sbjct: 497 EDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFV 556
Query: 549 GDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQAS 608
D+NDNAP +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+AS
Sbjct: 557 LDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKAS 616
Query: 609 EPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVL 668
EPGLF++G TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ +VL
Sbjct: 617 EPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVL 676
Query: 669 PDITDRPVPSDPQ-AELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGL 727
D+ P++ + ++L YLVVA+A +S +FL VI+ +A RLRR GL
Sbjct: 677 ADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGL 736
Query: 728 CVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQDILCGDSSGALFPL 787
SG +Y+ V+ T + + L Q + ++ +S PL
Sbjct: 737 TGVSGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHL-IFPQPNYADTLISQESCEKNDPL 795
Query: 788 CNSSESTSHPE-----LQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAM 842
+S E QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAM
Sbjct: 796 SLLDDSKFPIEDTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAM 855
Query: 843 ILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKR 902
ILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKR
Sbjct: 856 ILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKR 915
Query: 903 DGKAPAGGNGNKKKSGKKEKK 923
DGKAPAGGNGNKKKSGKKEKK
Sbjct: 916 DGKAPAGGNGNKKKSGKKEKK 936
>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 890 bits (2300), Expect = 0.0
Identities = 478/912 (52%), Positives = 609/912 (66%), Gaps = 29/912 (3%)
Query: 32 QIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPYFTVSAESGELLVSSR 89
QIRY +PEE KGS VGN++ DLG ++L +R+ S F ++ SG L+ + R
Sbjct: 30 QIRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRGRTQLFALNPRSGSLITAGR 89
Query: 90 LDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPG 149
+DREE+C + P C + + E+ + V +EI DIND+ PKF E++I+E A PG
Sbjct: 90 IDREELCAQSPRCLININTLVEDKGKLFGVEIEIIDINDNNPKFQVEDLEVKINEIAVPG 149
Query: 150 TRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHR 209
R+ L A D D+G+NSLQ Y+LS N FSL ++ +G+ PEL LE+ LDRE+++ H
Sbjct: 150 ARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAHH 209
Query: 210 LVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQ 269
LVLTA DGG PP S T + + V D NDN PVF +YRV + EN+PPGT +L V+A+D
Sbjct: 210 LVLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENMPPGTRLLTVTASDP 269
Query: 270 DEGINSEITYSFYRTGQ----IFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVA 325
DEGIN ++ Y F + + +F LN +GEI+ K LD+EE Y M ++ D G L+
Sbjct: 270 DEGINGKVAYKFRKINEKQTPLFQLNENTGEISIAKSLDYEECSFYEMEIQAEDVGALLG 329
Query: 326 QCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQGE 385
+ + I+++D NDN PEV SL +LEN++PGT+IA + +HDQDSG+NG+V C +
Sbjct: 330 RTKLLISVEDVNDNRPEVIITSLFSPVLENSLPGTVIAFLSVHDQDSGKNGQVVCYTRDN 389
Query: 386 VPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVNDNA 445
+PFK+ S N Y+LVT LDRE YN+T+ A+D G PPLS+ + LH+ D+NDN
Sbjct: 390 LPFKLEKSIGNYYRLVTRKYLDRENVSIYNITVMASDLGTPPLSTETQIALHVADINDNP 449
Query: 446 PVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSMSA 505
P F ASY + ENN GASI + A D D N QV+YS+ L+ L+SY+S+++
Sbjct: 450 PTFPHASYSAYILENNLRGASIFSLTAHDPDSQENAQVTYSVTEDTLQGAPLSSYISINS 509
Query: 506 QSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPALGP 565
+GV++A ++FDYEQ+R +L + A D G P LS+N+SL + V D+NDNAP +LYPAL
Sbjct: 510 DTGVLYALQSFDYEQIRDLQLLVTASDSGDPPLSSNMSLSLFVLDQNDNAPEILYPALPT 569
Query: 566 DGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTA 625
DGS ++ PR+AE GYLVTKVVAVD DSG NAWLSY +L+ASEPGLFS+GL TGEVRTA
Sbjct: 570 DGSTGVELAPRSAERGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTA 629
Query: 626 RALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSDP-QAEL 684
RAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ EVL ++ DP + L
Sbjct: 630 RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLTELGSLKPSVDPNDSSL 689
Query: 685 QFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCVKSG---PVVPPNYSQ 741
YLVVA+A IS +FL V + + LRLRR W + L SG VP ++
Sbjct: 690 TLYLVVAVAAISCVFLAFVAVLLGLRLRR------W--HKSRLLQDSGGRLVGVPASHFV 741
Query: 742 G-----TLPYSYNLCVAHTGKTEFNFL-----KCSEQLSSGQDILCGDSSGALFPLCNSS 791
G +Y+ V+ T + + L ++ L S + DS
Sbjct: 742 GVEEVQAFLQTYSQEVSLTADSRKSHLIFPQPNYADMLISQEGCEKNDSLLTSVDFHEYK 801
Query: 792 ESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAA 851
H + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAA
Sbjct: 802 NEADHGQ-QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAA 860
Query: 852 DGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGN 911
DGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGN
Sbjct: 861 DGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGN 920
Query: 912 GNKKKSGKKEKK 923
GNKKKSGKKEKK
Sbjct: 921 GNKKKSGKKEKK 932
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 889 bits (2297), Expect = 0.0
Identities = 488/922 (52%), Positives = 618/922 (67%), Gaps = 21/922 (2%)
Query: 20 FLLSLFC----PALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KP 73
FLLS+ A +I Y + EE KGS VG++A DLG +EL R +R+ S
Sbjct: 14 FLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQ 73
Query: 74 YFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKF 133
F ++ SG L+ + R+DREEIC + C + F + E+ +N Y ++VEI DIND+ P+F
Sbjct: 74 LFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRF 133
Query: 134 TQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPE 193
++I E+ PG RF L A D D+G NSLQ Y+LS N FSL ++ D +KYPE
Sbjct: 134 LTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPE 193
Query: 194 LALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRE 253
L LE+ LDRE++ H LVLTA DGG PP S T +++ V D ND+ PVF+ Y+V++ E
Sbjct: 194 LVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPE 253
Query: 254 NVPPGTTVLQVSATDQDEGINSEITYSFYRTG----QIFSLNSKSGEITTQKKLDFEETK 309
NVP GT +L V A D DEG+N E+TYSF + ++F LNS +GEI+T + LD+EET
Sbjct: 254 NVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETA 313
Query: 310 EYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHD 369
Y M V+ +DG G + + V I + D NDN+PEVT SL I E+ GT+IAL + D
Sbjct: 314 FYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQD 373
Query: 370 QDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLS 429
+DSG+NGEV C + +PFK+ S N Y+LVT LDRE YN+T+ ATD G PPLS
Sbjct: 374 RDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLS 433
Query: 430 SSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMA 489
+ + + D NDN P F +SY V + ENNP GASI V A D D N Q++YS+
Sbjct: 434 RETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAE 493
Query: 490 SDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVG 549
++ ++SYVS+++ +GV++A ++FDYEQLR +L + A D G P LS+N+SL + V
Sbjct: 494 DTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVL 553
Query: 550 DRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
D+NDN P +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG NAWLSY +L+ASE
Sbjct: 554 DQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASE 613
Query: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 669
PGLF++GL TGEVRTARAL DRDA +Q L+VAV+D GQPPLSAT TL + ADS+ EVL
Sbjct: 614 PGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLA 673
Query: 670 DITD-RPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLC 728
D+ P +L YLVVA+A +S +FL V++ +ALRLRR + GL
Sbjct: 674 DLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGLA 733
Query: 729 -VKSGPVVPPNYSQGTL-PYSYNLCV-AHTGKTEFNFLKCS--EQLSSGQDILCGDS--S 781
V + V + Q L YS+ + + A + K+ F + + + L S + DS +
Sbjct: 734 NVPTSHFVGMDGVQAFLQTYSHEVSLTADSRKSHLIFPQPNYVDMLISQESCEKNDSLLT 793
Query: 782 GALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 841
F C + + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA
Sbjct: 794 SVDFQECKENLPSIQ---QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQA 850
Query: 842 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 901
MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
Sbjct: 851 MILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK 910
Query: 902 RDGKAPAGGNGNKKKSGKKEKK 923
RDGKAPAGGNGNKKKSGKKEKK
Sbjct: 911 RDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precursor
[Homo sapiens]
Length = 938
Score = 825 bits (2132), Expect = 0.0
Identities = 443/930 (47%), Positives = 593/930 (63%), Gaps = 53/930 (5%)
Query: 29 LCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPYFTVSAESGELLV 86
+C QIRY +PEE +G+ VGN+A D L R+L+V+ E + +F V +SG LL+
Sbjct: 27 VCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGALLI 86
Query: 87 SSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESA 146
+ +DRE +CG +C + E V E PL Y VEI D+NDH P+F + +L+I E+A
Sbjct: 87 KNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGEAA 146
Query: 147 QPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQS 206
PG RF LE A+DAD+G NS+ Y+LS N F+L +K++ DGS PEL LEK LDRE+QS
Sbjct: 147 PPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQS 206
Query: 207 YHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSA 266
+RLVLTA+DGG+PP SGT ELR+ V D NDN P F + YR+S+ E+ P G ++Q++A
Sbjct: 207 DYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNA 266
Query: 267 TDQDEGINSEITYSFY-----RTGQIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGG 321
+D D G + +T+ F R +FSL+ +G++T LDFE Y V RDGG
Sbjct: 267 SDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGG 326
Query: 322 G--LVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDSGENGEVN 379
+ C++ +++ D NDN+P +T S L + E+A PGT++ALI + D DSG NG+V+
Sbjct: 327 SPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVS 386
Query: 380 CQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSISVILHIR 439
++ +PF + S+ +N + LVT G LDRE Y++ +TA+D G PPLS+ ++ L+I
Sbjct: 387 LRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLNIS 446
Query: 440 DVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDLEPLALAS 499
DVNDN P F Q S+ V VPENN PG + + ASD D GLN +SYS++ ++ +S
Sbjct: 447 DVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSASS 506
Query: 500 YVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVL 559
++S++ Q+G V A R+FDYEQ +T + +QARD+G+P LS+ V++R+ V D NDNAP VL
Sbjct: 507 FISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVL 566
Query: 560 YPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRT 619
P P GS +P + G+L+TKV AVD DSG+NAW+SY +L+A +P LF++
Sbjct: 567 RPRARP-GSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYA 625
Query: 620 GEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSD 679
GEVRTA + D Q+L++ V+D G PPLS + TL + + V+PD+ + P +
Sbjct: 626 GEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAPRE 684
Query: 680 PQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCV-----KSGPV 734
++ L YL V+L I + + + ++ LR ++ +CF G C +
Sbjct: 685 GESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGV--TCFPAGTCACLTRSRRREG 742
Query: 735 VPPN---------------------YSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQ 773
+PP+ +S G P L A T F +K +G+
Sbjct: 743 LPPSNGILRIQLGSDDPIKFVDVGGHSHGCTP----LASAPTRSDSFMMVKSPSAPMAGE 798
Query: 774 DILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 833
+ P C S+ E QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 799 PVR---------PSCPPSDLLYGLE-QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 848
Query: 834 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 893
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 849 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 908
Query: 894 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 909 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
[Homo sapiens]
Length = 944
Score = 814 bits (2103), Expect = 0.0
Identities = 459/939 (48%), Positives = 599/939 (63%), Gaps = 44/939 (4%)
Query: 19 LFLLSLFCPA-LCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKP--YF 75
L +LSL C + Q+RY + EE G++VGN+A DLG + +L +R+L++ SE+ YF
Sbjct: 16 LCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYF 75
Query: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
++S SG L V+ ++DRE +CG +C L + V E+PL V VEI D+ND++P F
Sbjct: 76 SLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFAT 135
Query: 136 NSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELA 195
E++ISESA G RF L+ A+D D+G N++ Y LS N FSL +K +DG +PEL
Sbjct: 136 PEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELV 195
Query: 196 LEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENV 255
LE+ LDRE Q+ H+LVLTA+DGG P SGTT + + V D NDN P F V RV + EN
Sbjct: 196 LEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENA 255
Query: 256 PPGTTVLQVSATDQDEGINSEITYSF-----YRTGQIFSLNSKSGEITTQKKLDFEETKE 310
P GT +L+++ATD DEG N ++ YSF +F L+ SG I +DFEE++
Sbjct: 256 PIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRF 315
Query: 311 YSMVVEGRDGG--GLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIH 368
Y + RD G + C +++++ D NDN+PEV SL +LE+ GT++ L +
Sbjct: 316 YEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVR 375
Query: 369 DQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPL 428
D+DSG NGEV+ + ++PF+I S+N Y L+T LDRE T Y + + A+D G P L
Sbjct: 376 DRDSGRNGEVSLDISPDLPFQI-KPSENHYSLLTSQPLDREATSHYIIELLASDAGSPSL 434
Query: 429 SSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIM 488
+++ L+I DVNDNAP F+Q Y + EN PPG+ + V ASD D G N +++YSI+
Sbjct: 435 HKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIV 494
Query: 489 ASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLV 548
+ ++ +S+V ++ + G +FAQR FDYE L+ ++ + RD GSP L AN SL V V
Sbjct: 495 GNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFV 554
Query: 549 GDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVL-QA 607
D NDNAP VL+P + SA +PR+A PG LVTKV AVDAD+GHNAWLSY +L Q+
Sbjct: 555 LDENDNAPAVLHPRPDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQS 613
Query: 608 SEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEV 667
+ PGLF + TGEVRTARAL + D+ Q+++V VRD G P LS+TAT+ LV D E
Sbjct: 614 TAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEE 673
Query: 668 LPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRL--------------RR 713
+P +D + +++L YL+VALA +S+L L+ A L RR
Sbjct: 674 MPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGGGGQCCRR 733
Query: 714 SSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQ 773
SP+ P +S P + + S GTL Y + + T + C S G
Sbjct: 734 QDSPS------PDFYKQSSPNLQVS-SDGTLKYM-EVTLRPTDSQSHCYRTCFSPASDGS 785
Query: 774 DI-------LCGDSSGALFPLCNSSESTSHPEL--QAPPNTDWRFSQAQRPGTSGSQNGD 824
D + ++ AL P S S + E QAPPNTDWRFSQAQRPGTSGSQNGD
Sbjct: 786 DFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSGSQNGD 845
Query: 825 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 884
DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ
Sbjct: 846 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 905
Query: 885 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 906 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
>gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precursor
[Homo sapiens]
Length = 934
Score = 814 bits (2102), Expect = 0.0
Identities = 445/907 (49%), Positives = 587/907 (64%), Gaps = 21/907 (2%)
Query: 33 IRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSS--EKPYFTVSAESGELLVSSRL 90
I Y IPEE KG VGN+ +LG + L R+ RV S + +F V+ E+GE+ V+ RL
Sbjct: 33 IHYEIPEEREKGFAVGNVVANLGLDLGSLSARRFRVVSGASRRFFEVNRETGEMFVNDRL 92
Query: 91 DREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESAQPGT 150
DREE+CG P+C + E V ENPL + V V I+DIND+ P F +L+ISE+ PGT
Sbjct: 93 DREELCGTLPSCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQEMKLEISEAVAPGT 152
Query: 151 RFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRL 210
RF LE A D D+G NSLQ Y+LS N F+L ++ ++D +KY EL LE+ LDRE++ +L
Sbjct: 153 RFPLESAHDPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVLERALDREREPSLQL 212
Query: 211 VLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQD 270
VLTALDGG P LS + + I+V DANDN PVFN+ +YR + E+ P GT V+QV ATD D
Sbjct: 213 VLTALDGGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAPSGTRVVQVLATDLD 272
Query: 271 EGINSEITYSF---YRTG--QIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLV- 324
EG N EI YSF R G Q+F+L+ +G +T + +LDFE+TK + + ++ +D G
Sbjct: 273 EGPNGEIIYSFGSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLHEIYIQAKDKGANPE 332
Query: 325 -AQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDSGENGEVNCQLQ 383
A C V + + D NDN+PE+T S+ + E+A GT+IAL+ + D D+GENG V C++
Sbjct: 333 GAHCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTDLDAGENGLVTCEVP 392
Query: 384 GEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSISVILHIRDVND 443
+PF + SS KN + L T LDRE PEYN++ITA D G P LS+ V + + D+ND
Sbjct: 393 PGLPFSLTSSLKNYFTLKTSADLDRETVPEYNLSITARDAGTPSLSALTIVRVQVSDIND 452
Query: 444 NAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDLEPLALASYVSM 503
N P Q+SY V + ENN PGA I + D D N ++S+ ++ E + Y ++
Sbjct: 453 NPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNARLSFFLLEQGAETGLVGRYFTI 512
Query: 504 SAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLYPAL 563
+ +G+V + DYE R FELT D G+P L+ N+S+ + V DRNDNAP+VLYP
Sbjct: 513 NRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVTDRNDNAPQVLYPR- 571
Query: 564 GPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVR 623
P GS++ +M+PR G+LV++VV DAD+GHNAWLSY +L + LF++GL TG++
Sbjct: 572 -PGGSSV-EMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLLGSPNQSLFAIGLHTGQIS 629
Query: 624 TARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAE 683
TAR + D D+ RQ L V ++D G+P LS TATL + + E + P + +
Sbjct: 630 TARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTEDSPEARAEFPSGSAPREQKKN 689
Query: 684 LQFYLVVALALISVLFLLAVILAVALRLRR-SSSPAAWSCFQPGLCVKSGPVVPPNYSQG 742
L FYL+++L L+SV F++ V + ++ + S + L GP + + +G
Sbjct: 690 LTFYLLLSLILVSVGFVVTVFGVIIFKVYKWKQSRDLYRAPVSSLYRTPGPSLHADAVRG 749
Query: 743 TL--PYSYNLCVAHTGKTEFNFLK----CSEQLSSGQDILCGDSSGALFPLCNSSESTSH 796
L P+ Y+ T + L + L+S Q+ L S +F ++
Sbjct: 750 GLMSPHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQNTL--RSCDPVFYRQVLGAESAP 807
Query: 797 PELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST 856
P QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST
Sbjct: 808 PGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST 867
Query: 857 LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK 916
LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK
Sbjct: 868 LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK 927
Query: 917 SGKKEKK 923
SGKKEKK
Sbjct: 928 SGKKEKK 934
>gi|14196471 protocadherin gamma subfamily A, 5 isoform 2 precursor
[Homo sapiens]
Length = 813
Score = 702 bits (1811), Expect = 0.0
Identities = 368/719 (51%), Positives = 482/719 (67%), Gaps = 14/719 (1%)
Query: 2 GSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQEL 61
G G GEL +L LL C QIRY +PEE+ KGS VGN+A DLG QEL
Sbjct: 7 GWGCGEL-------LLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQEL 59
Query: 62 PTRKLRVSSE--KPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHV 119
R +R+ S F ++ SG L+ + R+DREE+C + P C + F + EN + Y V
Sbjct: 60 AERGVRIVSRGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGV 119
Query: 120 NVEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFS 179
VEI DIND+ P+F +++++E+A GTR +L A DAD+G+NSL+ Y+LS N FS
Sbjct: 120 EVEIIDINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFS 179
Query: 180 LIIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNP 239
L + DG KYPEL LE+ LDRE+++ H L+LTALDGG P LSGTT +R+ V DANDN
Sbjct: 180 LDVVSGTDGQKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNA 239
Query: 240 PVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFY----RTGQIFSLNSKSG 295
P+F Y VS+ EN+P GT +L ++ATD DEGIN ++TYSF + + F L+S G
Sbjct: 240 PLFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLG 299
Query: 296 EITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILEN 355
EI+T + LD+EE++ Y M V +DGG LVA V + +QD NDN+PEV SL I E+
Sbjct: 300 EISTLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISED 359
Query: 356 AVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYN 415
+PGT+IAL +HD DSGENGE+ C + +PFK+ S N Y L+T LDRE+T +YN
Sbjct: 360 CLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYN 419
Query: 416 VTITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDL 475
+T+T D G PPLS+ + L + DVNDN P F QASY SV ENNP G SI V A D
Sbjct: 420 ITLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDP 479
Query: 476 DLGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGS 535
D G N +V+YS+ + L+SYVS+++ +GV++A R+FDYEQLR +L + A D G+
Sbjct: 480 DSGDNARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGN 539
Query: 536 PALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSG 595
P LS+NVSL + V D+NDN P +LYPAL DGS ++ PR+AEPGYLVTKVVAVD DSG
Sbjct: 540 PPLSSNVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSG 599
Query: 596 HNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATAT 655
NAWLSY +L+ASEPGLF++GL TGEVRTARAL DRDA +Q L+VAV D GQPPLSAT T
Sbjct: 600 QNAWLSYRLLKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFT 659
Query: 656 LHLVFADSLQEVLPDITDRPVPSDPQ-AELQFYLVVALALISVLFLLAVILAVALRLRR 713
+ + AD + ++L D+ P DP+ +L YLVVA+A +S +FL VI+ + LRLRR
Sbjct: 660 VTVAVADRIPDILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRR 718
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,819,997
Number of Sequences: 37866
Number of extensions: 1716835
Number of successful extensions: 10744
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3290
Number of HSP's gapped (non-prelim): 677
length of query: 923
length of database: 18,247,518
effective HSP length: 112
effective length of query: 811
effective length of database: 14,006,526
effective search space: 11359292586
effective search space used: 11359292586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.