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Search of human proteins with 111154099
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|111154099 Rho GTPase activating protein 24 isoform 2 [Homo
sapiens]
(655 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|111154099 Rho GTPase activating protein 24 isoform 2 [Homo sa... 1313 0.0
gi|111154090 Rho GTPase activating protein 24 isoform 3 [Homo sa... 1236 0.0
gi|111154092 Rho GTPase activating protein 24 isoform 1 [Homo sa... 1236 0.0
gi|34013590 Rho GTPase activating protein 2 [Homo sapiens] 438 e-123
gi|55770898 Rho GTPase activating protein 25 isoform a [Homo sap... 315 8e-86
gi|7661882 Rho GTPase activating protein 25 isoform b [Homo sapi... 315 8e-86
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 122 1e-27
gi|54860079 nadrin isoform 1 [Homo sapiens] 117 3e-26
gi|54860105 nadrin isoform 2 [Homo sapiens] 117 3e-26
gi|75677374 SLIT-ROBO Rho GTPase activating protein 3 isoform b ... 113 5e-25
gi|24307967 SLIT-ROBO Rho GTPase activating protein 3 isoform a ... 113 5e-25
gi|44917604 SLIT-ROBO Rho GTPase activating protein 1 [Homo sapi... 111 2e-24
gi|226693398 Rho GTPase activating protein 27 isoform b [Homo sa... 110 4e-24
gi|40548322 Rho GTPase activating protein 27 isoform a [Homo sap... 110 4e-24
gi|4757980 beta chimerin isoform 2 [Homo sapiens] 110 5e-24
gi|91106928 beta chimerin isoform 1 [Homo sapiens] 110 5e-24
gi|56119110 family with sequence similarity 13, member A1 isofor... 108 2e-23
gi|4502813 chimerin (chimaerin) 1 isoform a [Homo sapiens] 107 5e-23
gi|209364623 chimerin (chimaerin) 1 isoform b [Homo sapiens] 107 5e-23
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 106 8e-23
gi|156071465 Rho GTPase activating protein 4 [Homo sapiens] 105 1e-22
gi|112363100 SLIT-ROBO Rho GTPase activating protein 2 isoform a... 105 1e-22
gi|112363096 SLIT-ROBO Rho GTPase activating protein 2 isoform b... 105 1e-22
gi|156142190 hypothetical protein LOC51306 isoform 2 [Homo sapiens] 104 2e-22
gi|156142188 hypothetical protein LOC51306 isoform 1 [Homo sapiens] 104 2e-22
gi|226423858 PRR5-ARHGAP8 fusion protein [Homo sapiens] 104 3e-22
gi|66346660 Rho GTPase activating protein 8 isoform 2 [Homo sapi... 104 3e-22
gi|66346662 Rho GTPase activating protein 8 isoform 1 [Homo sapi... 104 3e-22
gi|203097003 Rho GTPase activating protein 21 [Homo sapiens] 103 4e-22
gi|188497642 ARHGAP15 [Homo sapiens] 101 2e-21
>gi|111154099 Rho GTPase activating protein 24 isoform 2 [Homo
sapiens]
Length = 655
Score = 1313 bits (3397), Expect = 0.0
Identities = 655/655 (100%), Positives = 655/655 (100%)
Query: 1 MPEDRNSGGCPAGALASTPFIPKTTYRRIKRCFSFRKGIFGQKLEDTVRYEKRYGNRLAP 60
MPEDRNSGGCPAGALASTPFIPKTTYRRIKRCFSFRKGIFGQKLEDTVRYEKRYGNRLAP
Sbjct: 1 MPEDRNSGGCPAGALASTPFIPKTTYRRIKRCFSFRKGIFGQKLEDTVRYEKRYGNRLAP 60
Query: 61 MLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKL 120
MLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKL
Sbjct: 61 MLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKL 120
Query: 121 YLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLDE 180
YLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLDE
Sbjct: 121 YLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLDE 180
Query: 181 VQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKHDCLFPKDA 240
VQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKHDCLFPKDA
Sbjct: 181 VQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKHDCLFPKDA 240
Query: 241 ELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTKDSPSRQCSWDKSESPQRSSMNNGSPT 300
ELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTKDSPSRQCSWDKSESPQRSSMNNGSPT
Sbjct: 241 ELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTKDSPSRQCSWDKSESPQRSSMNNGSPT 300
Query: 301 ALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFNKGSGIVTNGSFSSSNAEGLEKTQTTP 360
ALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFNKGSGIVTNGSFSSSNAEGLEKTQTTP
Sbjct: 301 ALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFNKGSGIVTNGSFSSSNAEGLEKTQTTP 360
Query: 361 NGSLQARRSSSLKVSGTKMGTHSVQNGTVRMGILNSDTLGNPTNVRNMSWLPNGYVTLRD 420
NGSLQARRSSSLKVSGTKMGTHSVQNGTVRMGILNSDTLGNPTNVRNMSWLPNGYVTLRD
Sbjct: 361 NGSLQARRSSSLKVSGTKMGTHSVQNGTVRMGILNSDTLGNPTNVRNMSWLPNGYVTLRD 420
Query: 421 NKQKEQAGELGQHNRLSTYDNVHQQFSMMNLDDKQSIDSATWSTSSCEISLPENSNSCRS 480
NKQKEQAGELGQHNRLSTYDNVHQQFSMMNLDDKQSIDSATWSTSSCEISLPENSNSCRS
Sbjct: 421 NKQKEQAGELGQHNRLSTYDNVHQQFSMMNLDDKQSIDSATWSTSSCEISLPENSNSCRS 480
Query: 481 STTTCPEQDFFGGNFEDPVLDGPPQDDLSHPRDYESKSDHRSVGGRSSRATSSSDNSETF 540
STTTCPEQDFFGGNFEDPVLDGPPQDDLSHPRDYESKSDHRSVGGRSSRATSSSDNSETF
Sbjct: 481 STTTCPEQDFFGGNFEDPVLDGPPQDDLSHPRDYESKSDHRSVGGRSSRATSSSDNSETF 540
Query: 541 VGNSSSNHSALHSLVSSLKQEMTKQKIEYESRIKSLEQRNLTLETEMMSLHDELDQERKK 600
VGNSSSNHSALHSLVSSLKQEMTKQKIEYESRIKSLEQRNLTLETEMMSLHDELDQERKK
Sbjct: 541 VGNSSSNHSALHSLVSSLKQEMTKQKIEYESRIKSLEQRNLTLETEMMSLHDELDQERKK 600
Query: 601 FTMIEIKMRNAERAKEDAEKRNDMLQKEMEQFFSTFGELTVEPRRTERGNTIWIQ 655
FTMIEIKMRNAERAKEDAEKRNDMLQKEMEQFFSTFGELTVEPRRTERGNTIWIQ
Sbjct: 601 FTMIEIKMRNAERAKEDAEKRNDMLQKEMEQFFSTFGELTVEPRRTERGNTIWIQ 655
>gi|111154090 Rho GTPase activating protein 24 isoform 3 [Homo
sapiens]
Length = 653
Score = 1236 bits (3197), Expect = 0.0
Identities = 619/621 (99%), Positives = 619/621 (99%)
Query: 35 FRKGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQ 94
F GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQ
Sbjct: 33 FGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQ 92
Query: 95 DAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVK 154
DAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVK
Sbjct: 93 DAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVK 152
Query: 155 ELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTI 214
ELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTI
Sbjct: 153 ELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTI 212
Query: 215 MEGTVVVQQLMSVMISKHDCLFPKDAELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTK 274
MEGTVVVQQLMSVMISKHDCLFPKDAELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTK
Sbjct: 213 MEGTVVVQQLMSVMISKHDCLFPKDAELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTK 272
Query: 275 DSPSRQCSWDKSESPQRSSMNNGSPTALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFN 334
DSPSRQCSWDKSESPQRSSMNNGSPTALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFN
Sbjct: 273 DSPSRQCSWDKSESPQRSSMNNGSPTALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFN 332
Query: 335 KGSGIVTNGSFSSSNAEGLEKTQTTPNGSLQARRSSSLKVSGTKMGTHSVQNGTVRMGIL 394
KGSGIVTNGSFSSSNAEGLEKTQTTPNGSLQARRSSSLKVSGTKMGTHSVQNGTVRMGIL
Sbjct: 333 KGSGIVTNGSFSSSNAEGLEKTQTTPNGSLQARRSSSLKVSGTKMGTHSVQNGTVRMGIL 392
Query: 395 NSDTLGNPTNVRNMSWLPNGYVTLRDNKQKEQAGELGQHNRLSTYDNVHQQFSMMNLDDK 454
NSDTLGNPTNVRNMSWLPNGYVTLRDNKQKEQAGELGQHNRLSTYDNVHQQFSMMNLDDK
Sbjct: 393 NSDTLGNPTNVRNMSWLPNGYVTLRDNKQKEQAGELGQHNRLSTYDNVHQQFSMMNLDDK 452
Query: 455 QSIDSATWSTSSCEISLPENSNSCRSSTTTCPEQDFFGGNFEDPVLDGPPQDDLSHPRDY 514
QSIDSATWSTSSCEISLPENSNSCRSSTTTCPEQDFFGGNFEDPVLDGPPQDDLSHPRDY
Sbjct: 453 QSIDSATWSTSSCEISLPENSNSCRSSTTTCPEQDFFGGNFEDPVLDGPPQDDLSHPRDY 512
Query: 515 ESKSDHRSVGGRSSRATSSSDNSETFVGNSSSNHSALHSLVSSLKQEMTKQKIEYESRIK 574
ESKSDHRSVGGRSSRATSSSDNSETFVGNSSSNHSALHSLVSSLKQEMTKQKIEYESRIK
Sbjct: 513 ESKSDHRSVGGRSSRATSSSDNSETFVGNSSSNHSALHSLVSSLKQEMTKQKIEYESRIK 572
Query: 575 SLEQRNLTLETEMMSLHDELDQERKKFTMIEIKMRNAERAKEDAEKRNDMLQKEMEQFFS 634
SLEQRNLTLETEMMSLHDELDQERKKFTMIEIKMRNAERAKEDAEKRNDMLQKEMEQFFS
Sbjct: 573 SLEQRNLTLETEMMSLHDELDQERKKFTMIEIKMRNAERAKEDAEKRNDMLQKEMEQFFS 632
Query: 635 TFGELTVEPRRTERGNTIWIQ 655
TFGELTVEPRRTERGNTIWIQ
Sbjct: 633 TFGELTVEPRRTERGNTIWIQ 653
>gi|111154092 Rho GTPase activating protein 24 isoform 1 [Homo
sapiens]
Length = 748
Score = 1236 bits (3197), Expect = 0.0
Identities = 619/621 (99%), Positives = 619/621 (99%)
Query: 35 FRKGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQ 94
F GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQ
Sbjct: 128 FGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQ 187
Query: 95 DAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVK 154
DAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVK
Sbjct: 188 DAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVK 247
Query: 155 ELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTI 214
ELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTI
Sbjct: 248 ELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTI 307
Query: 215 MEGTVVVQQLMSVMISKHDCLFPKDAELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTK 274
MEGTVVVQQLMSVMISKHDCLFPKDAELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTK
Sbjct: 308 MEGTVVVQQLMSVMISKHDCLFPKDAELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTK 367
Query: 275 DSPSRQCSWDKSESPQRSSMNNGSPTALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFN 334
DSPSRQCSWDKSESPQRSSMNNGSPTALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFN
Sbjct: 368 DSPSRQCSWDKSESPQRSSMNNGSPTALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFN 427
Query: 335 KGSGIVTNGSFSSSNAEGLEKTQTTPNGSLQARRSSSLKVSGTKMGTHSVQNGTVRMGIL 394
KGSGIVTNGSFSSSNAEGLEKTQTTPNGSLQARRSSSLKVSGTKMGTHSVQNGTVRMGIL
Sbjct: 428 KGSGIVTNGSFSSSNAEGLEKTQTTPNGSLQARRSSSLKVSGTKMGTHSVQNGTVRMGIL 487
Query: 395 NSDTLGNPTNVRNMSWLPNGYVTLRDNKQKEQAGELGQHNRLSTYDNVHQQFSMMNLDDK 454
NSDTLGNPTNVRNMSWLPNGYVTLRDNKQKEQAGELGQHNRLSTYDNVHQQFSMMNLDDK
Sbjct: 488 NSDTLGNPTNVRNMSWLPNGYVTLRDNKQKEQAGELGQHNRLSTYDNVHQQFSMMNLDDK 547
Query: 455 QSIDSATWSTSSCEISLPENSNSCRSSTTTCPEQDFFGGNFEDPVLDGPPQDDLSHPRDY 514
QSIDSATWSTSSCEISLPENSNSCRSSTTTCPEQDFFGGNFEDPVLDGPPQDDLSHPRDY
Sbjct: 548 QSIDSATWSTSSCEISLPENSNSCRSSTTTCPEQDFFGGNFEDPVLDGPPQDDLSHPRDY 607
Query: 515 ESKSDHRSVGGRSSRATSSSDNSETFVGNSSSNHSALHSLVSSLKQEMTKQKIEYESRIK 574
ESKSDHRSVGGRSSRATSSSDNSETFVGNSSSNHSALHSLVSSLKQEMTKQKIEYESRIK
Sbjct: 608 ESKSDHRSVGGRSSRATSSSDNSETFVGNSSSNHSALHSLVSSLKQEMTKQKIEYESRIK 667
Query: 575 SLEQRNLTLETEMMSLHDELDQERKKFTMIEIKMRNAERAKEDAEKRNDMLQKEMEQFFS 634
SLEQRNLTLETEMMSLHDELDQERKKFTMIEIKMRNAERAKEDAEKRNDMLQKEMEQFFS
Sbjct: 668 SLEQRNLTLETEMMSLHDELDQERKKFTMIEIKMRNAERAKEDAEKRNDMLQKEMEQFFS 727
Query: 635 TFGELTVEPRRTERGNTIWIQ 655
TFGELTVEPRRTERGNTIWIQ
Sbjct: 728 TFGELTVEPRRTERGNTIWIQ 748
>gi|34013590 Rho GTPase activating protein 2 [Homo sapiens]
Length = 698
Score = 438 bits (1126), Expect = e-123
Identities = 278/614 (45%), Positives = 362/614 (58%), Gaps = 85/614 (13%)
Query: 38 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAF 97
GIFGQ+LE+TV +E++YG RLAP+LVEQCVDFIR+RGL EEGLFR+PGQANLV++LQD+F
Sbjct: 151 GIFGQRLEETVHHERKYGPRLAPLLVEQCVDFIRERGLTEEGLFRMPGQANLVRDLQDSF 210
Query: 98 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELA 157
DCGEKP FDS TDVHTVASLLKLYLRELPEPV+P+A+YEDFLSCA+LL+K+E G ELA
Sbjct: 211 DCGEKPLFDSTTDVHTVASLLKLYLRELPEPVVPFARYEDFLSCAQLLTKDEGEGTLELA 270
Query: 158 KQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEG 217
KQV +LP NYNLL+YIC+FLDEVQ+YS VNKMSVQNLATVFGPNILRP+VEDP+TIMEG
Sbjct: 271 KQVSNLPQANYNLLRYICKFLDEVQAYSNVNKMSVQNLATVFGPNILRPQVEDPVTIMEG 330
Query: 218 TVVVQQLMSVMISKHDCLFPKDA-ELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTKDS 276
T +VQ LM+V+I KH LF E + P+ G+
Sbjct: 331 TSLVQHLMTVLIRKHSQLFTAPVPEGPTSPRGGL-------------------------- 364
Query: 277 PSRQCS--WDKSESPQRSSMNNGSPTALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFN 334
QC+ W E + S G P L +T+S + + +SR+ P
Sbjct: 365 ---QCAVGWGSEEVTRDSQGEPGGP-GLPAHRTSSLDGAAVAV-LSRTAP---------- 409
Query: 335 KGSGIVTNGSFSSSNAEGLEKTQTTPNGSLQARRSSSLKVSGTKMGTHSVQNGTVRMGIL 394
G G S +K QT P+ R+ SL SG+ G S ++ + I+
Sbjct: 410 TGPG---------SRCSPGKKVQTLPSWKSSFRQPRSL--SGSPKGGGS----SLEVPII 454
Query: 395 NSDTLGNPTNVRNMSWLPNGYVTLRDNKQKEQAGEL---GQHNRLSTYDNVHQQFSMMNL 451
+S GN WL NG +LR +++ L G RLSTYDNV + +
Sbjct: 455 SSG--GN--------WLMNGLSSLRGHRRASSGDRLKDSGSVQRLSTYDNVPAPGLVPGI 504
Query: 452 DDKQSIDSATWS-TSSCEISLPENSNSCRSSTTTCPEQDFFGGN--FEDPVLDGPPQDDL 508
S+ S WS SS E S+ + +SC T C D + D L+ P
Sbjct: 505 ---PSVASMAWSGASSSESSVGGSLSSC----TACRASDSSARSSLHTDWALEPSPLPSS 557
Query: 509 SH-PRDYESKSDHRSVGGRSSRATSSSDNSETFVGNSSSNHSALHSLVSSLKQEMTKQKI 567
S P+ + G +S + S +S T + AL LV+ L+ E+ +Q+
Sbjct: 558 SEDPKSLDLDHSMDEAGAGASNSEPSEPDSPT--REHARRSEALQGLVTELRAELCRQRT 615
Query: 568 EYESRIKSLEQRNLTLETEMMSLHDELDQERKKFTMIEIKMRNAERAKEDAEKRNDMLQK 627
EYE +K +E+ + L M L +ELDQE+KK+ M+EIK+RN+ERA+EDAE+RN +LQ+
Sbjct: 616 EYERSVKRIEEGSADLRKRMSRLEEELDQEKKKYIMLEIKLRNSERAREDAERRNQLLQR 675
Query: 628 EMEQFFSTFGELTV 641
EME+FFST G LTV
Sbjct: 676 EMEEFFSTLGSLTV 689
>gi|55770898 Rho GTPase activating protein 25 isoform a [Homo
sapiens]
Length = 645
Score = 315 bits (807), Expect = 8e-86
Identities = 204/616 (33%), Positives = 305/616 (49%), Gaps = 137/616 (22%)
Query: 38 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAF 97
G+FGQ+L++TV YE+++G L P+LVE+C +FI + G EEG+FRLPGQ NLVK+L+DAF
Sbjct: 155 GVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGRNEEGIFRLPGQDNLVKQLRDAF 214
Query: 98 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELA 157
D GE+PSFD +TDVHTVASLLKLYLR+LPEPV+P+++YE FL C +L + +E +EL
Sbjct: 215 DAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLTNADEAKAQQELM 274
Query: 158 KQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEG 217
KQ+ LP NY+LL YICRFL E+Q VNKMSV NLATV G N++R KVEDP IM G
Sbjct: 275 KQLSILPRDNYSLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVNLIRSKVEDPAVIMRG 334
Query: 218 TVVVQQLMSVMISKHDCLFPKDAELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTKDSP 277
T +Q++M++MI H+ LFPK ++ P + N+ K +P
Sbjct: 335 TPQIQRVMTMMIRDHEVLFPKSKDIPLSPP--------------------AQKNDPKKAP 374
Query: 278 SRQCS--WDKSESPQRSSMNNGSPTALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFNK 335
+ S WD +E R S + + S S T SP + + AF +
Sbjct: 375 VARSSVGWDATED-LRISRTDSFSSMTSDSDTTSPTGQ--------------QPSDAFPE 419
Query: 336 GSGIVTNGSFSSSNAEGLEKTQTTPN------GSLQARRSSSLKVSGTKMGTHSVQNGTV 389
S V + ++TQT PN + Q SS +++
Sbjct: 420 DSSKVPREKPGDWKMQSRKRTQTLPNRKCFLTSAFQGANSSKMEI--------------- 464
Query: 390 RMGILNSDTLGNPTNVRNMSWLPNGYVTLRDNKQKEQAGELGQ---HNRLSTYDNVHQQF 446
+N W P+ + ++ + +L Q R STYDNV
Sbjct: 465 ---------------FKNEFWSPSSEAKAGEGHRRTMSQDLRQLSDSQRTSTYDNV---- 505
Query: 447 SMMNLDDKQSIDSATWSTSSCEISLPENSNSCRSSTTTCPEQDFFGGNFEDPVLDGPPQD 506
+L +++ S+ +C
Sbjct: 506 --PSLPGSPGEEASALSSQAC--------------------------------------- 524
Query: 507 DLSHPRDYESKSDHRSVGGRSSRATSSSDNSETFVGNSSSNHSALHSLVSSLKQEMTKQK 566
+SK D + A+ +S+ + +L +V L++E+ QK
Sbjct: 525 --------DSKGD--------TLASPNSETGPGKKNSGEEEIDSLQRMVQELRKEIETQK 568
Query: 567 IEYESRIKSLEQRNLTLETEMMSLHDELDQERKKFTMIEIKMRNAERAKEDAEKRNDMLQ 626
YE +IK+LE+ N + +++ L++EL++E+KK +EI +RN ER++ED EKRN L+
Sbjct: 569 QMYEEQIKNLEKENYDVWAKVVRLNEELEKEKKKSAALEISLRNMERSREDVEKRNKALE 628
Query: 627 KEMEQFFSTFGELTVE 642
+E+++F + E E
Sbjct: 629 EEVKEFVKSMKEPKTE 644
>gi|7661882 Rho GTPase activating protein 25 isoform b [Homo
sapiens]
Length = 638
Score = 315 bits (807), Expect = 8e-86
Identities = 204/616 (33%), Positives = 305/616 (49%), Gaps = 137/616 (22%)
Query: 38 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAF 97
G+FGQ+L++TV YE+++G L P+LVE+C +FI + G EEG+FRLPGQ NLVK+L+DAF
Sbjct: 148 GVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGRNEEGIFRLPGQDNLVKQLRDAF 207
Query: 98 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELA 157
D GE+PSFD +TDVHTVASLLKLYLR+LPEPV+P+++YE FL C +L + +E +EL
Sbjct: 208 DAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLTNADEAKAQQELM 267
Query: 158 KQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEG 217
KQ+ LP NY+LL YICRFL E+Q VNKMSV NLATV G N++R KVEDP IM G
Sbjct: 268 KQLSILPRDNYSLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVNLIRSKVEDPAVIMRG 327
Query: 218 TVVVQQLMSVMISKHDCLFPKDAELQSKPQDGVSNNNEIQKKATMGQLQNKENNNTKDSP 277
T +Q++M++MI H+ LFPK ++ P + N+ K +P
Sbjct: 328 TPQIQRVMTMMIRDHEVLFPKSKDIPLSPP--------------------AQKNDPKKAP 367
Query: 278 SRQCS--WDKSESPQRSSMNNGSPTALSGSKTNSPKNSVHKLDVSRSPPLMVKKNPAFNK 335
+ S WD +E R S + + S S T SP + + AF +
Sbjct: 368 VARSSVGWDATED-LRISRTDSFSSMTSDSDTTSPTGQ--------------QPSDAFPE 412
Query: 336 GSGIVTNGSFSSSNAEGLEKTQTTPN------GSLQARRSSSLKVSGTKMGTHSVQNGTV 389
S V + ++TQT PN + Q SS +++
Sbjct: 413 DSSKVPREKPGDWKMQSRKRTQTLPNRKCFLTSAFQGANSSKMEI--------------- 457
Query: 390 RMGILNSDTLGNPTNVRNMSWLPNGYVTLRDNKQKEQAGELGQ---HNRLSTYDNVHQQF 446
+N W P+ + ++ + +L Q R STYDNV
Sbjct: 458 ---------------FKNEFWSPSSEAKAGEGHRRTMSQDLRQLSDSQRTSTYDNV---- 498
Query: 447 SMMNLDDKQSIDSATWSTSSCEISLPENSNSCRSSTTTCPEQDFFGGNFEDPVLDGPPQD 506
+L +++ S+ +C
Sbjct: 499 --PSLPGSPGEEASALSSQAC--------------------------------------- 517
Query: 507 DLSHPRDYESKSDHRSVGGRSSRATSSSDNSETFVGNSSSNHSALHSLVSSLKQEMTKQK 566
+SK D + A+ +S+ + +L +V L++E+ QK
Sbjct: 518 --------DSKGD--------TLASPNSETGPGKKNSGEEEIDSLQRMVQELRKEIETQK 561
Query: 567 IEYESRIKSLEQRNLTLETEMMSLHDELDQERKKFTMIEIKMRNAERAKEDAEKRNDMLQ 626
YE +IK+LE+ N + +++ L++EL++E+KK +EI +RN ER++ED EKRN L+
Sbjct: 562 QMYEEQIKNLEKENYDVWAKVVRLNEELEKEKKKSAALEISLRNMERSREDVEKRNKALE 621
Query: 627 KEMEQFFSTFGELTVE 642
+E+++F + E E
Sbjct: 622 EEVKEFVKSMKEPKTE 637
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 122 bits (306), Expect = 1e-27
Identities = 70/207 (33%), Positives = 119/207 (57%), Gaps = 8/207 (3%)
Query: 37 KGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDA 96
K FG+ LE+ + G +A +E CV + + G++EEGLFR+ A+ +K+L+ A
Sbjct: 250 KPSFGKPLEEHLTIS---GREIA-FPIEACVTMLLECGMQEEGLFRVAPSASKLKKLKAA 305
Query: 97 FDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKEL 156
DC + + D H +A LK YLRELPEP++ + Y++++ + + +E++ ++ L
Sbjct: 306 LDCCVVDVQEYSADPHAIAGALKSYLRELPEPLMTFELYDEWIQASNV--QEQDKKLQAL 363
Query: 157 AKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIME 216
+ LP N+N ++Y+ +FL ++ Y VNKM+ N+A V GPN+L P+ E +T M
Sbjct: 364 WNACEKLPKANHNNIRYLIKFLSKLSEYQDVNKMTPSNMAIVLGPNLLWPQAEGNITEMM 423
Query: 217 GTVVVQ--QLMSVMISKHDCLFPKDAE 241
TV +Q ++ +I D FP + E
Sbjct: 424 TTVSLQIVGIIEPIIQHADWFFPGEIE 450
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 117 bits (294), Expect = 3e-26
Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 8/207 (3%)
Query: 37 KGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDA 96
K FG LE+ + KR G +A + +E CV + + G+KEEGLFR+ A+ +K+L+ A
Sbjct: 247 KPAFGTPLEEHL---KRSGREIA-LPIEACVMLLLETGMKEEGLFRIGAGASKLKKLKAA 302
Query: 97 FDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKEL 156
DC + +D H VA LK YLRELPEP++ + YE++ A + ++++ +++L
Sbjct: 303 LDCSTSHLDEFYSDPHAVAGALKSYLRELPEPLMTFNLYEEWTQVASV--QDQDKKLQDL 360
Query: 157 AKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIME 216
+ + LP N+ +Y+ +FL ++ S VNKM+ N+A V GPN+L + E L M
Sbjct: 361 WRTCQKLPPQNFVNFRYLIKFLAKLAQTSDVNKMTPSNIAIVLGPNLLWARNEGTLAEMA 420
Query: 217 G--TVVVQQLMSVMISKHDCLFPKDAE 241
+V V ++ +I D FP++ E
Sbjct: 421 AATSVHVVAVIEPIIQHADWFFPEEVE 447
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 117 bits (294), Expect = 3e-26
Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 8/207 (3%)
Query: 37 KGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDA 96
K FG LE+ + KR G +A + +E CV + + G+KEEGLFR+ A+ +K+L+ A
Sbjct: 247 KPAFGTPLEEHL---KRSGREIA-LPIEACVMLLLETGMKEEGLFRIGAGASKLKKLKAA 302
Query: 97 FDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKEL 156
DC + +D H VA LK YLRELPEP++ + YE++ A + ++++ +++L
Sbjct: 303 LDCSTSHLDEFYSDPHAVAGALKSYLRELPEPLMTFNLYEEWTQVASV--QDQDKKLQDL 360
Query: 157 AKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIME 216
+ + LP N+ +Y+ +FL ++ S VNKM+ N+A V GPN+L + E L M
Sbjct: 361 WRTCQKLPPQNFVNFRYLIKFLAKLAQTSDVNKMTPSNIAIVLGPNLLWARNEGTLAEMA 420
Query: 217 G--TVVVQQLMSVMISKHDCLFPKDAE 241
+V V ++ +I D FP++ E
Sbjct: 421 AATSVHVVAVIEPIIQHADWFFPEEVE 447
>gi|75677374 SLIT-ROBO Rho GTPase activating protein 3 isoform b
[Homo sapiens]
Length = 1075
Score = 113 bits (283), Expect = 5e-25
Identities = 60/187 (32%), Positives = 110/187 (58%), Gaps = 8/187 (4%)
Query: 60 PMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFD--SNTDVHTVASL 117
P++VE C+ +I GL+++G+FR+PG V +++++F+ GE P D + D+++VA +
Sbjct: 496 PLVVESCIRYINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDPLVDDQNERDINSVAGV 555
Query: 118 LKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRF 177
LKLY R L P+ P +++D +S KL + E V ++ + + +LP V +++Y+ F
Sbjct: 556 LKLYFRGLENPLFPKERFQDLISTIKLENPAER--VHQIQQILVTLPRVVIVVMRYLFAF 613
Query: 178 LDEVQSYSGVNKMSVQNLATVFGPNILR-PKVEDPLTIMEGTVVVQQLMSVMISKHDCLF 236
L+ + YS N M NLA FGP ++ P +DP++ + +++ +I H+ +F
Sbjct: 614 LNHLSQYSDENMMDPYNLAICFGPTLMHIPDGQDPVSCQ---AHINEVIKTIIIHHEAIF 670
Query: 237 PKDAELQ 243
P EL+
Sbjct: 671 PSPRELE 677
>gi|24307967 SLIT-ROBO Rho GTPase activating protein 3 isoform a
[Homo sapiens]
Length = 1099
Score = 113 bits (283), Expect = 5e-25
Identities = 60/187 (32%), Positives = 110/187 (58%), Gaps = 8/187 (4%)
Query: 60 PMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFD--SNTDVHTVASL 117
P++VE C+ +I GL+++G+FR+PG V +++++F+ GE P D + D+++VA +
Sbjct: 520 PLVVESCIRYINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDPLVDDQNERDINSVAGV 579
Query: 118 LKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRF 177
LKLY R L P+ P +++D +S KL + E V ++ + + +LP V +++Y+ F
Sbjct: 580 LKLYFRGLENPLFPKERFQDLISTIKLENPAER--VHQIQQILVTLPRVVIVVMRYLFAF 637
Query: 178 LDEVQSYSGVNKMSVQNLATVFGPNILR-PKVEDPLTIMEGTVVVQQLMSVMISKHDCLF 236
L+ + YS N M NLA FGP ++ P +DP++ + +++ +I H+ +F
Sbjct: 638 LNHLSQYSDENMMDPYNLAICFGPTLMHIPDGQDPVSCQ---AHINEVIKTIIIHHEAIF 694
Query: 237 PKDAELQ 243
P EL+
Sbjct: 695 PSPRELE 701
>gi|44917604 SLIT-ROBO Rho GTPase activating protein 1 [Homo
sapiens]
Length = 1085
Score = 111 bits (278), Expect = 2e-24
Identities = 66/220 (30%), Positives = 120/220 (54%), Gaps = 12/220 (5%)
Query: 26 YRRIKRCFSFRKGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPG 85
+R+ + + +F LE V+ ++ P++VE C+ FI GL+ +G+FR+ G
Sbjct: 490 HRKSRPRSQYNTKLFNGDLETFVKDS----GQVIPLIVESCIRFINLYGLQHQGIFRVSG 545
Query: 86 QANLVKELQDAFDCGEKPSFD--SNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAK 143
V +++++F+ GE P D SN D+++VA +LKLY R L P+ P ++ D +SC +
Sbjct: 546 SQVEVNDIKNSFERGENPLADDQSNHDINSVAGVLKLYFRGLENPLFPKERFNDLISCIR 605
Query: 144 LLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNI 203
+ + E A + K + +LP +++Y+ FL+ + YS N M NLA FGP +
Sbjct: 606 IDNLYERA--LHIRKLLLTLPRSVLIVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTL 663
Query: 204 LR-PKVEDPLTIMEGTVVVQQLMSVMISKHDCLFPKDAEL 242
+ P+++D ++ V +++ +I H+ +FP EL
Sbjct: 664 MPVPEIQDQVSCQ---AHVNEIIKTIIIHHETIFPDAKEL 700
>gi|226693398 Rho GTPase activating protein 27 isoform b [Homo
sapiens]
Length = 521
Score = 110 bits (275), Expect = 4e-24
Identities = 64/182 (35%), Positives = 108/182 (59%), Gaps = 9/182 (4%)
Query: 60 PMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNT--DVHTVASL 117
P V+QC+ + RGL +GL+R+ G +++L+ D E+ D DVH +
Sbjct: 343 PRFVQQCIRAVEARGLDIDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGA 402
Query: 118 LKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAG-VKELAKQVKSLPVVNYNLLKYICR 176
LKL+ RELPEP+ P++ + F++ KL + + V++L V+SLP N++ L+ + +
Sbjct: 403 LKLFFRELPEPLFPFSHFRQFIAAIKLQDQARRSRCVRDL---VRSLPAPNHDTLRMLFQ 459
Query: 177 FLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQ-QLMSVMISKHDCL 235
L V + N+MSVQ++A VFGP +LRP+VE+ T M T+V Q Q++ +++ + +
Sbjct: 460 HLCRVIEHGEQNRMSVQSVAIVFGPTLLRPEVEE--TSMPMTMVFQNQVVELILQQCADI 517
Query: 236 FP 237
FP
Sbjct: 518 FP 519
>gi|40548322 Rho GTPase activating protein 27 isoform a [Homo
sapiens]
Length = 548
Score = 110 bits (275), Expect = 4e-24
Identities = 64/182 (35%), Positives = 108/182 (59%), Gaps = 9/182 (4%)
Query: 60 PMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNT--DVHTVASL 117
P V+QC+ + RGL +GL+R+ G +++L+ D E+ D DVH +
Sbjct: 370 PRFVQQCIRAVEARGLDIDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGA 429
Query: 118 LKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAG-VKELAKQVKSLPVVNYNLLKYICR 176
LKL+ RELPEP+ P++ + F++ KL + + V++L V+SLP N++ L+ + +
Sbjct: 430 LKLFFRELPEPLFPFSHFRQFIAAIKLQDQARRSRCVRDL---VRSLPAPNHDTLRMLFQ 486
Query: 177 FLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQ-QLMSVMISKHDCL 235
L V + N+MSVQ++A VFGP +LRP+VE+ T M T+V Q Q++ +++ + +
Sbjct: 487 HLCRVIEHGEQNRMSVQSVAIVFGPTLLRPEVEE--TSMPMTMVFQNQVVELILQQCADI 544
Query: 236 FP 237
FP
Sbjct: 545 FP 546
>gi|4757980 beta chimerin isoform 2 [Homo sapiens]
Length = 468
Score = 110 bits (274), Expect = 5e-24
Identities = 62/184 (33%), Positives = 101/184 (54%), Gaps = 5/184 (2%)
Query: 56 NRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDC-GEKPSFDSNT--DVH 112
N PM+V+ C+ I RGLK EGL+R+ G +++++ AFD GEK +N D++
Sbjct: 287 NTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDIN 346
Query: 113 TVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLK 172
+ LKLY R+LP PVI Y Y F+ AK+ + +E ++ + + + LP +Y L+
Sbjct: 347 IITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADER--LEAVHEVLMLLPPAHYETLR 404
Query: 173 YICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKH 232
Y+ L +V N M+ +NL VFGP ++RP + LT + + ++ ++I
Sbjct: 405 YLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTLTTLHDMRYQKLIVQILIENE 464
Query: 233 DCLF 236
D LF
Sbjct: 465 DVLF 468
>gi|91106928 beta chimerin isoform 1 [Homo sapiens]
Length = 332
Score = 110 bits (274), Expect = 5e-24
Identities = 62/184 (33%), Positives = 101/184 (54%), Gaps = 5/184 (2%)
Query: 56 NRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDC-GEKPSFDSNT--DVH 112
N PM+V+ C+ I RGLK EGL+R+ G +++++ AFD GEK +N D++
Sbjct: 151 NTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDIN 210
Query: 113 TVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLK 172
+ LKLY R+LP PVI Y Y F+ AK+ + +E ++ + + + LP +Y L+
Sbjct: 211 IITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADER--LEAVHEVLMLLPPAHYETLR 268
Query: 173 YICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKH 232
Y+ L +V N M+ +NL VFGP ++RP + LT + + ++ ++I
Sbjct: 269 YLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTLTTLHDMRYQKLIVQILIENE 328
Query: 233 DCLF 236
D LF
Sbjct: 329 DVLF 332
>gi|56119110 family with sequence similarity 13, member A1 isoform a
[Homo sapiens]
Length = 1023
Score = 108 bits (269), Expect = 2e-23
Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 11/206 (5%)
Query: 33 FSFRKGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKE 92
F+++K +FG L++ R P +V V+++ Q GL +EGLFR+ G +V++
Sbjct: 35 FTYQK-LFGVSLQELERQGLTENG--IPAVVWNIVEYLTQHGLTQEGLFRVNGNVKVVEQ 91
Query: 93 LQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAG 152
L+ F+ G + DV + ASLLKL+LRELP+ +I A F+ L ++
Sbjct: 92 LRLKFESGVPVELGKDGDVCSAASLLKLFLRELPDSLITSALQPRFIQ----LFQDGRND 147
Query: 153 VKE--LAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVED 210
V+E L +K LP +Y LLKY+C+FL +V + N+M+V NLATVFGPN V
Sbjct: 148 VQESSLRDLIKELPDTHYCLLKYLCQFLTKVAKHHVQNRMNVHNLATVFGPNCFH--VPP 205
Query: 211 PLTIMEGTVVVQQLMSVMISKHDCLF 236
L M+ + ++M+ ++ ++ LF
Sbjct: 206 GLEGMKEQDLCNKIMAKILENYNTLF 231
Score = 34.3 bits (77), Expect = 0.37
Identities = 69/328 (21%), Positives = 113/328 (34%), Gaps = 54/328 (16%)
Query: 349 NAEGLEKTQTTPNGSLQARRSSSLKVSGTKMGT-HSVQNGTVRMGILNSDTLGNPTNVRN 407
N + +EK G R + S TK+ H Q+G V M LNS T +
Sbjct: 445 NTQEVEKVHKNTFGCAGERSKPKRQKSSTKLSELHDNQDGLVNMESLNSTRSHERTGPDD 504
Query: 408 MSWLPNGYVTLRDNKQKEQAGELGQHNRLST--------YDNVHQQFSMMNLDDKQSI-- 457
W+ + + K E+ G QH T + QQ + D ++S
Sbjct: 505 FEWMSD------ERKGNEKDGGHTQHFESPTMKIQEHPSLSDTKQQRNQDAGDQEESFVS 558
Query: 458 -----------DSATWSTSSCEISLPENSNSCRSSTTTCPEQDFFGGNFEDPVLDGPPQD 506
D W S + NS P+ G +LD D
Sbjct: 559 EVPQSDLTALCDEKNWEEPIPAFSSWQRENSDSDEAHLSPQ----AGRLIRQLLD-EDSD 613
Query: 507 DLSHPRDYESKSDHRSVGGRSSRATSSSDNSETFVGNSSSNHSALHSLVSSLKQEMTKQK 566
+ PR Y + + + S NS +F+ SS SL S ++
Sbjct: 614 PMLSPRFYAYGQSRQYLD--DTEVPPSPPNSHSFMRRRSS------SLGSYDDEQEDLTP 665
Query: 567 IEYESRIKSLEQRNLTLETEMMSLHDELDQERKKFTMIEIKMRNAERAKEDAEKRNDM-- 624
+ RI+SL+++ + D ++E+K K N E K ND+
Sbjct: 666 AQLTRRIQSLKKK-------IRKFEDRFEEEKKYRPSHSDKAANPEVLK----WTNDLAK 714
Query: 625 LQKEMEQFFSTFGELTVEPRRTERGNTI 652
++++++ E + PR +R NT+
Sbjct: 715 FRRQLKESKLKISEEDLTPRMRQRSNTL 742
>gi|4502813 chimerin (chimaerin) 1 isoform a [Homo sapiens]
Length = 459
Score = 107 bits (266), Expect = 5e-23
Identities = 59/180 (32%), Positives = 100/180 (55%), Gaps = 5/180 (2%)
Query: 60 PMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFD-CGEKPSFDSN--TDVHTVAS 116
PM+V+ C+ I RGL EGL+R+ G ++L+++++ AFD GEK N D++ +
Sbjct: 282 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 341
Query: 117 LLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICR 176
LKLY R+LP P+I Y Y F+ AK++ +E+ ++ L + +K LP + L+Y+
Sbjct: 342 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQ--LETLHEALKLLPPAHCETLRYLMA 399
Query: 177 FLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKHDCLF 236
L V + N M+ +NL VFGP ++R D + + + ++ ++I D LF
Sbjct: 400 HLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 459
>gi|209364623 chimerin (chimaerin) 1 isoform b [Homo sapiens]
Length = 433
Score = 107 bits (266), Expect = 5e-23
Identities = 59/180 (32%), Positives = 100/180 (55%), Gaps = 5/180 (2%)
Query: 60 PMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFD-CGEKPSFDSN--TDVHTVAS 116
PM+V+ C+ I RGL EGL+R+ G ++L+++++ AFD GEK N D++ +
Sbjct: 256 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 315
Query: 117 LLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICR 176
LKLY R+LP P+I Y Y F+ AK++ +E+ ++ L + +K LP + L+Y+
Sbjct: 316 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQ--LETLHEALKLLPPAHCETLRYLMA 373
Query: 177 FLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKHDCLF 236
L V + N M+ +NL VFGP ++R D + + + ++ ++I D LF
Sbjct: 374 HLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 433
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 106 bits (264), Expect = 8e-23
Identities = 67/182 (36%), Positives = 98/182 (53%), Gaps = 7/182 (3%)
Query: 63 VEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYL 122
+E CV + G+KEEGLFRL A+++K L+ + +D H VA LK YL
Sbjct: 293 IEACVMMLLSEGMKEEGLFRLAAGASVLKRLKQTMASDPHSLEEFCSDPHAVAGALKSYL 352
Query: 123 RELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLDEVQ 182
RELPEP++ + Y+D++ A L KE A ++ L + LP N + L+Y+ +FL +
Sbjct: 353 RELPEPLMTFDLYDDWMRAASL--KEPGARLQALQEVCSRLPPENLSNLRYLMKFLARLA 410
Query: 183 SYSGVNKMSVQNLATVFGPNILRP--KVEDPLTIMEGTVVVQQLMSV---MISKHDCLFP 237
VNKM+ N+A V GPN+L P K D + +V Q++ V +I D LFP
Sbjct: 411 EEQEVNKMTPSNIAIVLGPNLLWPPEKEGDQAQLDAASVSSIQVVGVVEALIQSADTLFP 470
Query: 238 KD 239
D
Sbjct: 471 GD 472
>gi|156071465 Rho GTPase activating protein 4 [Homo sapiens]
Length = 946
Score = 105 bits (263), Expect = 1e-22
Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 12/206 (5%)
Query: 35 FRKGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQ 94
+ + +FG +E ++ + P++VE C+ FI GL+ EG+FR+ G V E++
Sbjct: 500 YNQRLFGGDMEKFIQSS----GQPVPLVVESCIRFINLNGLQHEGIFRVSGAQLRVSEIR 555
Query: 95 DAFDCGEKPSFDSNT--DVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAG 152
DAF+ GE P + T D+ +VA +LKLY R L P+ P + + L+ ++L + E
Sbjct: 556 DAFERGEDPLVEGCTAHDLDSVAGVLKLYFRSLEPPLFPPDLFGELLASSELEATAER-- 613
Query: 153 VKELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILR-PKVEDP 211
V+ +++ + LP +L+Y+ FL+ + YS N M NLA FGP +L P +DP
Sbjct: 614 VEHVSRLLWRLPAPVLVVLRYLFTFLNHLAQYSDENMMDPYNLAVCFGPTLLPVPAGQDP 673
Query: 212 LTIMEGTVVVQQLMSVMISKHDCLFP 237
+ + V QL+ +I + D +FP
Sbjct: 674 VALQGR---VNQLVQTLIVQPDRVFP 696
>gi|112363100 SLIT-ROBO Rho GTPase activating protein 2 isoform a
[Homo sapiens]
Length = 1071
Score = 105 bits (263), Expect = 1e-22
Identities = 64/200 (32%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 47 TVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKP-SF 105
TVR K+ ++ P++VE C+ FI + GL+ EG+FR+ G V ++++AF+ GE P +
Sbjct: 494 TVR--KQDSSQAIPLVVESCIRFISRHGLQHEGIFRVSGSQVEVNDIKNAFERGEDPLAG 551
Query: 106 DSNT-DVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLP 164
D N D+ ++A +LKLY R L P+ P + D ++C + + +E A + K + LP
Sbjct: 552 DQNDHDMDSIAGVLKLYFRGLEHPLFPKDIFHDLMACVTMDNLQERA--LHIRKVLLVLP 609
Query: 165 VVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILR-PKVEDPLTIMEGTVVVQQ 223
+++Y+ FL+ + +S N M NLA FGP+++ P+ D ++ V +
Sbjct: 610 KTTLIIMRYLFAFLNHLSQFSEENMMDPYNLAICFGPSLMSVPEGHDQVSCQ---AHVNE 666
Query: 224 LMSVMISKHDCLFPKDAELQ 243
L+ +I +H+ +FP EL+
Sbjct: 667 LIKTIIIQHENIFPSPRELE 686
>gi|112363096 SLIT-ROBO Rho GTPase activating protein 2 isoform b
[Homo sapiens]
Length = 836
Score = 105 bits (263), Expect = 1e-22
Identities = 64/200 (32%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 47 TVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKP-SF 105
TVR K+ ++ P++VE C+ FI + GL+ EG+FR+ G V ++++AF+ GE P +
Sbjct: 494 TVR--KQDSSQAIPLVVESCIRFISRHGLQHEGIFRVSGSQVEVNDIKNAFERGEDPLAG 551
Query: 106 DSNT-DVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLP 164
D N D+ ++A +LKLY R L P+ P + D ++C + + +E A + K + LP
Sbjct: 552 DQNDHDMDSIAGVLKLYFRGLEHPLFPKDIFHDLMACVTMDNLQERA--LHIRKVLLVLP 609
Query: 165 VVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILR-PKVEDPLTIMEGTVVVQQ 223
+++Y+ FL+ + +S N M NLA FGP+++ P+ D ++ V +
Sbjct: 610 KTTLIIMRYLFAFLNHLSQFSEENMMDPYNLAICFGPSLMSVPEGHDQVSCQ---AHVNE 666
Query: 224 LMSVMISKHDCLFPKDAELQ 243
L+ +I +H+ +FP EL+
Sbjct: 667 LIKTIIIQHENIFPSPRELE 686
>gi|156142190 hypothetical protein LOC51306 isoform 2 [Homo sapiens]
Length = 887
Score = 104 bits (260), Expect = 2e-22
Identities = 68/206 (33%), Positives = 117/206 (56%), Gaps = 11/206 (5%)
Query: 39 IFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRG-LKEEGLFRLPGQANLVKELQDAF 97
IFG L++ + + + P +V VD+I + G L+++GLF++ G A V+ L+ +
Sbjct: 20 IFGIPLDEL--QQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETVEWLRQRY 77
Query: 98 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELA 157
D GE+ DV + SLL+ +L+ELPEPVIP + + + ++ + E+E G ++L
Sbjct: 78 DSGEEVDLVKEADVPSAISLLRFFLQELPEPVIPGSLHIHLMQLSQDYNNEDEFG-RKLR 136
Query: 158 KQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNI--LRPKVEDPLTIM 215
++ LP VNY+LLK++CRFL V S+ S +LA VFGP++ + VED M
Sbjct: 137 FLLQQLPPVNYSLLKFLCRFLANVASHH-EEIWSANSLAAVFGPDVFHIYTDVED----M 191
Query: 216 EGTVVVQQLMSVMISKHDCLFPKDAE 241
+ +V ++M+ ++ + F + E
Sbjct: 192 KEQEIVSRIMAGLLENYYEFFENEEE 217
>gi|156142188 hypothetical protein LOC51306 isoform 1 [Homo sapiens]
Length = 915
Score = 104 bits (260), Expect = 2e-22
Identities = 68/206 (33%), Positives = 117/206 (56%), Gaps = 11/206 (5%)
Query: 39 IFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRG-LKEEGLFRLPGQANLVKELQDAF 97
IFG L++ + + + P +V VD+I + G L+++GLF++ G A V+ L+ +
Sbjct: 20 IFGIPLDEL--QQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETVEWLRQRY 77
Query: 98 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELA 157
D GE+ DV + SLL+ +L+ELPEPVIP + + + ++ + E+E G ++L
Sbjct: 78 DSGEEVDLVKEADVPSAISLLRFFLQELPEPVIPGSLHIHLMQLSQDYNNEDEFG-RKLR 136
Query: 158 KQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNI--LRPKVEDPLTIM 215
++ LP VNY+LLK++CRFL V S+ S +LA VFGP++ + VED M
Sbjct: 137 FLLQQLPPVNYSLLKFLCRFLANVASHH-EEIWSANSLAAVFGPDVFHIYTDVED----M 191
Query: 216 EGTVVVQQLMSVMISKHDCLFPKDAE 241
+ +V ++M+ ++ + F + E
Sbjct: 192 KEQEIVSRIMAGLLENYYEFFENEEE 217
>gi|226423858 PRR5-ARHGAP8 fusion protein [Homo sapiens]
Length = 555
Score = 104 bits (259), Expect = 3e-22
Identities = 60/186 (32%), Positives = 102/186 (54%), Gaps = 6/186 (3%)
Query: 51 EKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTD 110
+K G + P+L V ++R++GL+ EGLFR V+E+Q ++ G+ +FD D
Sbjct: 324 DKNQGELIPPVL-RFTVTYLREKGLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGD 382
Query: 111 VHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNL 170
+H A +LK +LRELP+P++ + YE L + S G +++ ++SLP NY +
Sbjct: 383 IHIPAVILKTFLRELPQPLLTFQAYEQILGITCVESSLRVTGCRQI---LRSLPEHNYVV 439
Query: 171 LKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMIS 230
L+Y+ FL V S NKM+ NLA VFG N++ P ++ + V + ++I
Sbjct: 440 LRYLMGFLHAVSRESIFNKMNSSNLACVFGLNLIWP--SQGVSSLSALVPLNMFTELLIE 497
Query: 231 KHDCLF 236
++ +F
Sbjct: 498 YYEKIF 503
>gi|66346660 Rho GTPase activating protein 8 isoform 2 [Homo
sapiens]
Length = 433
Score = 104 bits (259), Expect = 3e-22
Identities = 60/186 (32%), Positives = 102/186 (54%), Gaps = 6/186 (3%)
Query: 51 EKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTD 110
+K G + P+L V ++R++GL+ EGLFR V+E+Q ++ G+ +FD D
Sbjct: 202 DKNQGELIPPVL-RFTVTYLREKGLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGD 260
Query: 111 VHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNL 170
+H A +LK +LRELP+P++ + YE L + S G +++ ++SLP NY +
Sbjct: 261 IHIPAVILKTFLRELPQPLLTFQAYEQILGITCVESSLRVTGCRQI---LRSLPEHNYVV 317
Query: 171 LKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMIS 230
L+Y+ FL V S NKM+ NLA VFG N++ P ++ + V + ++I
Sbjct: 318 LRYLMGFLHAVSRESIFNKMNSSNLACVFGLNLIWP--SQGVSSLSALVPLNMFTELLIE 375
Query: 231 KHDCLF 236
++ +F
Sbjct: 376 YYEKIF 381
>gi|66346662 Rho GTPase activating protein 8 isoform 1 [Homo
sapiens]
Length = 464
Score = 104 bits (259), Expect = 3e-22
Identities = 60/186 (32%), Positives = 102/186 (54%), Gaps = 6/186 (3%)
Query: 51 EKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTD 110
+K G + P+L V ++R++GL+ EGLFR V+E+Q ++ G+ +FD D
Sbjct: 233 DKNQGELIPPVL-RFTVTYLREKGLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGD 291
Query: 111 VHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNL 170
+H A +LK +LRELP+P++ + YE L + S G +++ ++SLP NY +
Sbjct: 292 IHIPAVILKTFLRELPQPLLTFQAYEQILGITCVESSLRVTGCRQI---LRSLPEHNYVV 348
Query: 171 LKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMIS 230
L+Y+ FL V S NKM+ NLA VFG N++ P ++ + V + ++I
Sbjct: 349 LRYLMGFLHAVSRESIFNKMNSSNLACVFGLNLIWP--SQGVSSLSALVPLNMFTELLIE 406
Query: 231 KHDCLF 236
++ +F
Sbjct: 407 YYEKIF 412
>gi|203097003 Rho GTPase activating protein 21 [Homo sapiens]
Length = 1958
Score = 103 bits (258), Expect = 4e-22
Identities = 80/293 (27%), Positives = 137/293 (46%), Gaps = 29/293 (9%)
Query: 38 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAF 97
G FG +L+D + NR P++V+ C + +RGL+ G++R+PG + +Q+
Sbjct: 1143 GTFGVRLDDC---PPAHTNRYIPLIVDICCKLVEERGLEYTGIYRVPGNNAAISSMQEEL 1199
Query: 98 DCGEKP---SFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAG-V 153
+ G D D++ ++SLLK + R+LPEP+ KY DF+ + KE+ +
Sbjct: 1200 NKGMADIDIQDDKWRDLNVISSLLKSFFRKLPEPLFTNDKYADFIEANR---KEDPLDRL 1256
Query: 154 KELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLT 213
K L + + LP +Y LK++ L V S NKM +NLA VFGP ++R ED +T
Sbjct: 1257 KTLKRLIHDLPEHHYETLKFLSAHLKTVAENSEKNKMEPRNLAIVFGPTLVRTS-EDNMT 1315
Query: 214 IMEGTVVVQ-QLMSVMISKHDCLF------------PKDAELQSKPQDGVSN--NNEIQK 258
M + Q +++ +I HD F +++ + S+P + + N +
Sbjct: 1316 HMVTHMPDQYKIVETLIQHHDWFFTEEGAEEPLTTVQEESTVDSQPVPNIDHLLTNIGRT 1375
Query: 259 KATMGQLQNKENNNTKDSPSRQCSWDKSESPQRSSMNNGSPTALSGSKTNSPK 311
+ G + ++ T DS + SW + + S A + K PK
Sbjct: 1376 GVSPGDV---SDSATSDSTKSKGSWGSGKDQYSRELLVSSIFAAASRKRKKPK 1425
>gi|188497642 ARHGAP15 [Homo sapiens]
Length = 475
Score = 101 bits (251), Expect = 2e-21
Identities = 59/205 (28%), Positives = 107/205 (52%), Gaps = 9/205 (4%)
Query: 39 IFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFD 98
IFG L E N P V+QC++ + +RGL +G++R+ G +++L+ +
Sbjct: 278 IFGSHLHKVCERE----NSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVN 333
Query: 99 CGEKPSFDSNT--DVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKEL 156
EK + D + D+H V LK++ RELPEP+ PY+ +E F+ K ++ ++ +
Sbjct: 334 QEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIK--KQDNNTRIEAV 391
Query: 157 AKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIME 216
V+ LP N + +K + L ++ + + N MS Q+L VFGP +LR + E +
Sbjct: 392 KSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAENETGNMAIH 451
Query: 217 GTVVVQQLMSVMISKHDCLFPKDAE 241
V Q+ +M+S++ +F + +
Sbjct: 452 -MVYQNQIAELMLSEYSKIFGSEED 475
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.127 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,107,027
Number of Sequences: 37866
Number of extensions: 1157871
Number of successful extensions: 5716
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 240
Number of HSP's that attempted gapping in prelim test: 4571
Number of HSP's gapped (non-prelim): 1132
length of query: 655
length of database: 18,247,518
effective HSP length: 109
effective length of query: 546
effective length of database: 14,120,124
effective search space: 7709587704
effective search space used: 7709587704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.