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Search of human proteins with 169172588
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169172588 PREDICTED: hypothetical protein [Homo sapiens]
(93 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169173396 PREDICTED: hypothetical protein [Homo sapiens] 158 1e-39
gi|169172588 PREDICTED: hypothetical protein [Homo sapiens] 158 1e-39
gi|169172986 PREDICTED: hypothetical protein [Homo sapiens] 158 1e-39
gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo ... 43 6e-05
gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo ... 43 6e-05
gi|91106202 G protein-coupled receptor 22 [Homo sapiens] 30 0.32
gi|194353995 apolipoprotein L domain containing 1 isoform 1 [Hom... 28 1.2
gi|194353993 apolipoprotein L domain containing 1 isoform 2 [Hom... 28 1.2
gi|27436877 tripartite motif-containing 59 [Homo sapiens] 27 2.7
gi|46409302 NIPA-like domain containing 1 [Homo sapiens] 27 3.5
gi|195972862 hypothetical protein LOC257044 isoform 1 [Homo sapi... 27 3.5
gi|28603838 hypothetical protein LOC257044 isoform 2 [Homo sapiens] 27 3.5
gi|209862785 anoctamin 2 [Homo sapiens] 27 4.6
gi|156231353 Niemann-Pick C1-like protein 1 isoform 2 [Homo sapi... 27 4.6
gi|156231351 Niemann-Pick C1-like protein 1 isoform 1 [Homo sapi... 27 4.6
gi|50345279 claudin 18 isoform 2 [Homo sapiens] 26 6.0
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 26 6.0
gi|47578107 delangin isoform B [Homo sapiens] 26 6.0
gi|47578105 delangin isoform A [Homo sapiens] 26 6.0
gi|186910319 solute carrier family 12, member 3 isoform 3 [Homo ... 26 7.9
gi|186910317 solute carrier family 12, member 3 isoform 2 [Homo ... 26 7.9
gi|186910315 solute carrier family 12, member 3 isoform 1 [Homo ... 26 7.9
>gi|169173396 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 158 bits (399), Expect = 1e-39
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MTTPTRDVKALRARALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISI 60
MTTPTRDVKALRARALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISI
Sbjct: 1 MTTPTRDVKALRARALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISI 60
Query: 61 SIISSISTISIIVIRIISIISSITTIISIRITI 93
SIISSISTISIIVIRIISIISSITTIISIRITI
Sbjct: 61 SIISSISTISIIVIRIISIISSITTIISIRITI 93
>gi|169172588 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 158 bits (399), Expect = 1e-39
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MTTPTRDVKALRARALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISI 60
MTTPTRDVKALRARALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISI
Sbjct: 1 MTTPTRDVKALRARALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISI 60
Query: 61 SIISSISTISIIVIRIISIISSITTIISIRITI 93
SIISSISTISIIVIRIISIISSITTIISIRITI
Sbjct: 61 SIISSISTISIIVIRIISIISSITTIISIRITI 93
>gi|169172986 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 158 bits (399), Expect = 1e-39
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MTTPTRDVKALRARALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISI 60
MTTPTRDVKALRARALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISI
Sbjct: 1 MTTPTRDVKALRARALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISI 60
Query: 61 SIISSISTISIIVIRIISIISSITTIISIRITI 93
SIISSISTISIIVIRIISIISSITTIISIRITI
Sbjct: 61 SIISSISTISIIVIRIISIISSITTIISIRITI 93
>gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo
sapiens]
Length = 391
Score = 42.7 bits (99), Expect = 6e-05
Identities = 21/87 (24%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 8 VKALRARALVLISIIISLSIIVTVIS-----IIGISIISITTLIIISSINITIISISISI 62
+ + + +VLI++I+ ++ VIS I + ++ I+ +++ISS+ + I S+ + I
Sbjct: 242 IVVITSLVVVLIAVIVVTPSLIVVISSLVVVIASLVVVFISLIVVISSLIVVITSLVVVI 301
Query: 63 ISSISTISIIVIRIISIISSITTIISI 89
S + I+ +++ I S++ IT+++ +
Sbjct: 302 TSLVVVITSLIVVITSLVVVITSLVVV 328
Score = 42.0 bits (97), Expect = 1e-04
Identities = 21/81 (25%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
Query: 18 LISIIISLSIIVT---------VISIIGISIISITTLIIISSINITIISISISIISSIST 68
L +II L +++T V+ +I + +++ + +++ISS+ + I S+ + IS I
Sbjct: 227 LFVVIIPLVVVITSLIVVITSLVVVLIAVIVVTPSLIVVISSLVVVIASLVVVFISLIVV 286
Query: 69 ISIIVIRIISIISSITTIISI 89
IS +++ I S++ IT+++ +
Sbjct: 287 ISSLIVVITSLVVVITSLVVV 307
Score = 38.1 bits (87), Expect = 0.002
Identities = 17/82 (20%), Positives = 55/82 (67%), Gaps = 7/82 (8%)
Query: 16 LVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISS----ISTISI 71
+V+ S+++ ++ +V VI+ +G+ I S+ ++++S+ + +I+ +++I+ I+++ +
Sbjct: 85 VVITSLVVIITCLVLVITALGVVITSLG--VVVTSL-VMVITPLVAVITPLGVVITSLVV 141
Query: 72 IVIRIISIISSITTIISIRITI 93
++ ++ +I+S+T +I+ I +
Sbjct: 142 VITSLVMVITSLTVVITSSIVV 163
Score = 37.7 bits (86), Expect = 0.002
Identities = 19/65 (29%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 22 IISLSIIVTVISIIGISIISITT--LIIISSINITIISISISIISSISTISIIVIRIISI 79
I SL +++T + +I S + +TT +++I+S+ + I SI+I+I + + ++ +V+ S+
Sbjct: 10 ITSLVVVITSLVVIITSFVVVTTSLVVVITSLVVVITSIAIAIATLVVVLTSLVVVTTSL 69
Query: 80 ISSIT 84
+ IT
Sbjct: 70 VMVIT 74
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/74 (31%), Positives = 51/74 (68%), Gaps = 8/74 (10%)
Query: 16 LVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISSISTISIIVIR 75
+V+ S+++ ++ +V VI+ +G+ I S+ +++I+S+ + I S+++ I S SI+VI
Sbjct: 113 VVVTSLVMVITPLVAVITPLGVVITSL--VVVITSLVMVITSLTVVITS-----SIVVIT 165
Query: 76 -IISIISSITTIIS 88
++ +I+S+T II+
Sbjct: 166 PLVMVITSLTVIIT 179
Score = 37.0 bits (84), Expect = 0.003
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 18 LISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISSISTISIIVIRII 77
L+ +I SL +++T + ++ I++I +T +I+ +IS + +I+S+ + I +I +I
Sbjct: 234 LVVVITSLIVVITSLVVVLIAVIVVTPSLIV------VISSLVVVIASLVVVFISLIVVI 287
Query: 78 SIISSITTIISIRIT 92
S + + T + + IT
Sbjct: 288 SSLIVVITSLVVVIT 302
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/78 (21%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 18 LISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISI------SIISSISTISI 71
L+ +I SL++I+T + ++ ++ + T +I+ + ++ ++ I++ S+ S I+
Sbjct: 167 LVMVITSLTVIITSLFVVITPLVMVITFLIVVNTSLVVVLITLIVSPPPSLWLSAPCITS 226
Query: 72 IVIRIISIISSITTIISI 89
+ + II ++ IT++I +
Sbjct: 227 LFVVIIPLVVVITSLIVV 244
Score = 32.7 bits (73), Expect = 0.065
Identities = 22/85 (25%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 18 LISIIISLSIIVTVISIIGISII----SITTLIIISSINIT-----IISISISIISSIST 68
L+++I L +++T + ++ S++ S+T +I S + IT I S+++ I S
Sbjct: 125 LVAVITPLGVVITSLVVVITSLVMVITSLTVVITSSIVVITPLVMVITSLTVIITSLFVV 184
Query: 69 ISIIVIRIISIISSITTIISIRITI 93
I+ +V+ I +I T+++ + IT+
Sbjct: 185 ITPLVMVITFLIVVNTSLVVVLITL 209
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/101 (19%), Positives = 56/101 (55%), Gaps = 18/101 (17%)
Query: 10 ALRARALVLISIIISLS--IIVT------------VISIIGISI----ISITTLIIISSI 51
A+ + +V+ S+++ ++ ++VT VI+ I I+I + +T+L+++++
Sbjct: 9 AITSLVVVITSLVVIITSFVVVTTSLVVVITSLVVVITSIAIAIATLVVVLTSLVVVTTS 68
Query: 52 NITIISISISIISSISTISIIVIRIISIISSITTIISIRIT 92
+ +I+ ++I+S+ + ++ II+ + + T + + IT
Sbjct: 69 LVMVITPPFAVITSLGVVITSLVVIITCLVLVITALGVVIT 109
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 8 VKALRARALVLISII--ISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISS 65
V + + +V IS+I IS S+IV + S++ ++ + +++I+S+ + I S+ + I S
Sbjct: 270 VVVIASLVVVFISLIVVIS-SLIVVITSLV---VVITSLVVVITSLIVVITSLVVVITSL 325
Query: 66 ISTISIIVIRIISI 79
+ I+ +++ II +
Sbjct: 326 VVVITSLIVVIIPL 339
>gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo
sapiens]
Length = 398
Score = 42.7 bits (99), Expect = 6e-05
Identities = 21/87 (24%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 8 VKALRARALVLISIIISLSIIVTVIS-----IIGISIISITTLIIISSINITIISISISI 62
+ + + +VLI++I+ ++ VIS I + ++ I+ +++ISS+ + I S+ + I
Sbjct: 249 IVVITSLVVVLIAVIVVTPSLIVVISSLVVVIASLVVVFISLIVVISSLIVVITSLVVVI 308
Query: 63 ISSISTISIIVIRIISIISSITTIISI 89
S + I+ +++ I S++ IT+++ +
Sbjct: 309 TSLVVVITSLIVVITSLVVVITSLVVV 335
Score = 42.0 bits (97), Expect = 1e-04
Identities = 21/81 (25%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
Query: 18 LISIIISLSIIVT---------VISIIGISIISITTLIIISSINITIISISISIISSIST 68
L +II L +++T V+ +I + +++ + +++ISS+ + I S+ + IS I
Sbjct: 234 LFVVIIPLVVVITSLIVVITSLVVVLIAVIVVTPSLIVVISSLVVVIASLVVVFISLIVV 293
Query: 69 ISIIVIRIISIISSITTIISI 89
IS +++ I S++ IT+++ +
Sbjct: 294 ISSLIVVITSLVVVITSLVVV 314
Score = 39.3 bits (90), Expect = 7e-04
Identities = 18/70 (25%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 22 IISLSIIVTVISIIGISIISITT--LIIISSINITIISISISIISSISTISIIVIRIISI 79
I SL +++T + +I S + +TT +++I+S+ + I SI+I+I + + ++ V+ + S+
Sbjct: 10 ITSLVVVITSLVVIITSFVVVTTSLVVVITSLVVVITSIAIAIATLVVVLTFTVVVLTSL 69
Query: 80 ISSITTIISI 89
+ T+++ +
Sbjct: 70 VVVTTSLVMV 79
Score = 38.1 bits (87), Expect = 0.002
Identities = 17/82 (20%), Positives = 55/82 (67%), Gaps = 7/82 (8%)
Query: 16 LVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISS----ISTISI 71
+V+ S+++ ++ +V VI+ +G+ I S+ ++++S+ + +I+ +++I+ I+++ +
Sbjct: 92 VVITSLVVIITCLVLVITALGVVITSLG--VVVTSL-VMVITPLVAVITPLGVVITSLVV 148
Query: 72 IVIRIISIISSITTIISIRITI 93
++ ++ +I+S+T +I+ I +
Sbjct: 149 VITSLVMVITSLTVVITSSIVV 170
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/74 (31%), Positives = 51/74 (68%), Gaps = 8/74 (10%)
Query: 16 LVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISSISTISIIVIR 75
+V+ S+++ ++ +V VI+ +G+ I S+ +++I+S+ + I S+++ I S SI+VI
Sbjct: 120 VVVTSLVMVITPLVAVITPLGVVITSL--VVVITSLVMVITSLTVVITS-----SIVVIT 172
Query: 76 -IISIISSITTIIS 88
++ +I+S+T II+
Sbjct: 173 PLVMVITSLTVIIT 186
Score = 37.0 bits (84), Expect = 0.003
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 18 LISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISSISTISIIVIRII 77
L+ +I SL +++T + ++ I++I +T +I+ +IS + +I+S+ + I +I +I
Sbjct: 241 LVVVITSLIVVITSLVVVLIAVIVVTPSLIV------VISSLVVVIASLVVVFISLIVVI 294
Query: 78 SIISSITTIISIRIT 92
S + + T + + IT
Sbjct: 295 SSLIVVITSLVVVIT 309
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/78 (21%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 18 LISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISI------SIISSISTISI 71
L+ +I SL++I+T + ++ ++ + T +I+ + ++ ++ I++ S+ S I+
Sbjct: 174 LVMVITSLTVIITSLFVVITPLVMVITFLIVVNTSLVVVLITLIVSPPPSLWLSAPCITS 233
Query: 72 IVIRIISIISSITTIISI 89
+ + II ++ IT++I +
Sbjct: 234 LFVVIIPLVVVITSLIVV 251
Score = 32.7 bits (73), Expect = 0.065
Identities = 22/85 (25%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 18 LISIIISLSIIVTVISIIGISII----SITTLIIISSINIT-----IISISISIISSIST 68
L+++I L +++T + ++ S++ S+T +I S + IT I S+++ I S
Sbjct: 132 LVAVITPLGVVITSLVVVITSLVMVITSLTVVITSSIVVITPLVMVITSLTVIITSLFVV 191
Query: 69 ISIIVIRIISIISSITTIISIRITI 93
I+ +V+ I +I T+++ + IT+
Sbjct: 192 ITPLVMVITFLIVVNTSLVVVLITL 216
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/87 (16%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 10 ALRARALVLISIIISLS--IIVTVISIIGIS--IISITTLIIISSINITIISISISIISS 65
A+ + +V+ S+++ ++ ++VT ++ I+ ++ IT++ I + + +++ ++ +++S
Sbjct: 9 AITSLVVVITSLVVIITSFVVVTTSLVVVITSLVVVITSIAIAIATLVVVLTFTVVVLTS 68
Query: 66 ISTISIIVIRIISIISSITTIISIRIT 92
+ ++ ++ +I+ ++ T + + IT
Sbjct: 69 LVVVTTSLVMVITPPFAVITSLGVVIT 95
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 8 VKALRARALVLISII--ISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISS 65
V + + +V IS+I IS S+IV + S++ ++ + +++I+S+ + I S+ + I S
Sbjct: 277 VVVIASLVVVFISLIVVIS-SLIVVITSLV---VVITSLVVVITSLIVVITSLVVVITSL 332
Query: 66 ISTISIIVIRIISI 79
+ I+ +++ II +
Sbjct: 333 VVVITSLIVVIIPL 346
>gi|91106202 G protein-coupled receptor 22 [Homo sapiens]
Length = 433
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 8 VKALRARALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISSIS 67
V L + VL+ + ++I +V +II +++ + +I + I +TI+ + +S+ S+ +
Sbjct: 53 VLGLGSNLTVLVLYCMKSNLINSVSNIITMNLHVLDVIICVGCIPLTIVILLLSLESNTA 112
Query: 68 TISIIVIRIISIISSITTIISIRITI 93
I +S S T I IT+
Sbjct: 113 LICCFHEACVSFASVSTAINVFAITL 138
>gi|194353995 apolipoprotein L domain containing 1 isoform 1 [Homo
sapiens]
Length = 279
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 6 RDVKALRARALVLISIIISLSIIVTVISIIGISIISIT--TLIIISSINITIISI--SIS 61
R ++ LR R+LV SLS + +I+G+S+ +T T +++S++ + + + +++
Sbjct: 74 RRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVT 133
Query: 62 IISSISTI 69
I S +S I
Sbjct: 134 ITSDLSLI 141
>gi|194353993 apolipoprotein L domain containing 1 isoform 2 [Homo
sapiens]
Length = 248
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 6 RDVKALRARALVLISIIISLSIIVTVISIIGISIISIT--TLIIISSINITIISI--SIS 61
R ++ LR R+LV SLS + +I+G+S+ +T T +++S++ + + + +++
Sbjct: 43 RRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVT 102
Query: 62 IISSISTI 69
I S +S I
Sbjct: 103 ITSDLSLI 110
>gi|27436877 tripartite motif-containing 59 [Homo sapiens]
Length = 403
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 27 IIVTVISIIGISIISITTLIIISSINITIISISISIISSISTISIIVIRIISIISSI 83
++VT+IS+I +SI+ II IT+I S + +S ++S + ++ +I+ I
Sbjct: 333 VVVTLISVILMSILFFNQHIITFLSEITLIWFSEASLSVYQSLSNSLHKVKNILCHI 389
>gi|46409302 NIPA-like domain containing 1 [Homo sapiens]
Length = 410
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 23 ISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISSISTISIIVIRIISI 79
IS ++I+TVIS++ I LI+ T I + ISI S I S+ ++ + I
Sbjct: 210 ISFAVIITVISLVLI-------LIVAPKKGQTNILVYISICSLIGAFSVSSVKGLGI 259
>gi|195972862 hypothetical protein LOC257044 isoform 1 [Homo
sapiens]
Length = 951
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/65 (21%), Positives = 32/65 (49%)
Query: 16 LVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISSISTISIIVIR 75
+ L SI++ + +VT + I +S+T + I + T + I++ + T+ + +
Sbjct: 359 IYLGSILLKFARLVTTTELKNILSLSVTATLTIDRVEYTGHPLEIAVFLNYCTVCNVTKK 418
Query: 76 IISII 80
I +I
Sbjct: 419 IFLVI 423
>gi|28603838 hypothetical protein LOC257044 isoform 2 [Homo sapiens]
Length = 832
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/65 (21%), Positives = 32/65 (49%)
Query: 16 LVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISSISTISIIVIR 75
+ L SI++ + +VT + I +S+T + I + T + I++ + T+ + +
Sbjct: 359 IYLGSILLKFARLVTTTELKNILSLSVTATLTIDRVEYTGHPLEIAVFLNYCTVCNVTKK 418
Query: 76 IISII 80
I +I
Sbjct: 419 IFLVI 423
>gi|209862785 anoctamin 2 [Homo sapiens]
Length = 998
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 23 ISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISSISTISIIVIRIISII 80
I I +T + G+ + ITT +S T ++ +++ ++ I+++VI I+ I
Sbjct: 537 ILFMIALTFSIVFGVIVYRITTAAALSLNKATRSNVRVTVTATAVIINLVVILILDEI 594
>gi|156231353 Niemann-Pick C1-like protein 1 isoform 2 [Homo sapiens]
Length = 1332
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/49 (26%), Positives = 32/49 (65%)
Query: 11 LRARALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISIS 59
LR+ L L+SI++ L V +++ GIS +++ + ++S++ +++ +S
Sbjct: 1135 LRSGLLNLLSIVMILVDTVGFMALWGISYNAVSLINLVSAVGMSVEFVS 1183
>gi|156231351 Niemann-Pick C1-like protein 1 isoform 1 [Homo sapiens]
Length = 1359
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/49 (26%), Positives = 32/49 (65%)
Query: 11 LRARALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISIS 59
LR+ L L+SI++ L V +++ GIS +++ + ++S++ +++ +S
Sbjct: 1162 LRSGLLNLLSIVMILVDTVGFMALWGISYNAVSLINLVSAVGMSVEFVS 1210
>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
Length = 261
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 14 RALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISSISTIS 70
RAL+++ I+ L I ++SI + I I ++ + N+T+ S + I+S + I+
Sbjct: 80 RALMIVGIV--LGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGIMFIVSGLCAIA 134
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 14 RALVLISIIISLSIIVTVISIIGISIISITTLIIISSINITIISISISIISSISTIS 70
RAL+++ I+ L I ++SI + I I ++ + N+T+ S + I+S + I+
Sbjct: 80 RALMIVGIV--LGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGIMFIVSGLCAIA 134
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/83 (18%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 1 MTTPTRDVKALRARALVLISIIISLSIIVTVIS-IIGISIISITTLIIISSINITIISIS 59
+++ + K + V++ + + IV+ +S ++ I +++ TT++ +SS+ IT
Sbjct: 1366 LSSKAKRAKCSTHKQRVIVMLYNKVCDIVSSLSELLEIQLLTDTTILQVSSMGITPF--- 1422
Query: 60 ISIISSISTISIIVIRIISIISS 82
+ ++S + + I++++ + S
Sbjct: 1423 --FVENVSELQLCAIKLVTAVFS 1443
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/83 (18%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 1 MTTPTRDVKALRARALVLISIIISLSIIVTVIS-IIGISIISITTLIIISSINITIISIS 59
+++ + K + V++ + + IV+ +S ++ I +++ TT++ +SS+ IT
Sbjct: 1366 LSSKAKRAKCSTHKQRVIVMLYNKVCDIVSSLSELLEIQLLTDTTILQVSSMGITPF--- 1422
Query: 60 ISIISSISTISIIVIRIISIISS 82
+ ++S + + I++++ + S
Sbjct: 1423 --FVENVSELQLCAIKLVTAVFS 1443
>gi|186910319 solute carrier family 12, member 3 isoform 3 [Homo
sapiens]
Length = 1021
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 16 LVLISIIISLSIIVTVISIIGISIISITT 44
+VL III LS VTV SI G+SI +I+T
Sbjct: 168 IVLTWIIILLS--VTVTSITGLSISAIST 194
>gi|186910317 solute carrier family 12, member 3 isoform 2 [Homo
sapiens]
Length = 1029
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 16 LVLISIIISLSIIVTVISIIGISIISITT 44
+VL III LS VTV SI G+SI +I+T
Sbjct: 167 IVLTWIIILLS--VTVTSITGLSISAIST 193
>gi|186910315 solute carrier family 12, member 3 isoform 1 [Homo
sapiens]
Length = 1030
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 16 LVLISIIISLSIIVTVISIIGISIISITT 44
+VL III LS VTV SI G+SI +I+T
Sbjct: 168 IVLTWIIILLS--VTVTSITGLSISAIST 194
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.331 0.144 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,602,037
Number of Sequences: 37866
Number of extensions: 32780
Number of successful extensions: 386
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 48
length of query: 93
length of database: 18,247,518
effective HSP length: 64
effective length of query: 29
effective length of database: 15,824,094
effective search space: 458898726
effective search space used: 458898726
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.