Guide to the Human Genome
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Name: LOC100131552 Sequence: fasta or formatted (93aa) NCBI GI: 169172588
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {93aa} PREDICTED: hypothetical protein
alt mRNA {93aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2          3           1
 C cysteine            0.0          0           0
 D aspartate           1.1          1           1
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine             1.1          1           1
 H histidine           0.0          0           0
 I isoleucine         41.9         39           3
 K lysine              1.1          1           1
 L leucine             5.4          5           1
 M methionine          1.1          1           1
 N asparagine          1.1          1           1
 P proline             1.1          1           1
 Q glutamine           0.0          0           0
 R arginine            5.4          5           1
 S serine             20.4         19           2
 T threonine          11.8         11           2
 V valine              5.4          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131552          1.000   PREDICTED: hypothetical protein 
LOC100131552          1.000   PREDICTED: hypothetical protein 
LOC100289996          0.135   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.135   PREDICTED: hypothetical protein XP_002343076 
GPR22                 0.038   G protein-coupled receptor 22 
APOLD1                0.023   apolipoprotein L domain containing 1 isoform 1 [Hom...
APOLD1                0.023   apolipoprotein L domain containing 1 isoform 2 [Hom...
TRIM59                0.015   tripartite motif-containing 59 
NIPAL1                0.015   NIPA-like domain containing 1 
C1orf101              0.015   hypothetical protein LOC257044 isoform 1 
C1orf101              0.015   hypothetical protein LOC257044 isoform 2 
ANO2                  0.015   anoctamin 2 
NPC1L1                0.015   Niemann-Pick C1-like protein 1 isoform 2 
NPC1L1                0.015   Niemann-Pick C1-like protein 1 isoform 1 
CLDN18                0.008   claudin 18 isoform 2 
CLDN18                0.008   claudin 18 isoform 1 
NIPBL                 0.008   delangin isoform B 
NIPBL                 0.008   delangin isoform A 
SLC12A3               0.008   solute carrier family 12, member 3 isoform 3 
SLC12A3               0.008   solute carrier family 12, member 3 isoform 2 
SLC12A3               0.008   solute carrier family 12, member 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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