Guide to the Human Genome
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Search of human proteins with 169165527

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169165527 PREDICTED: similar to hCG1643855 [Homo sapiens]
         (103 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169165527 PREDICTED: similar to hCG1643855 [Homo sapiens]          219   3e-58
gi|239742072 PREDICTED: hypothetical protein LOC391556 [Homo sap...   219   3e-58
gi|5032027 retinoblastoma binding protein 4 isoform a [Homo sapi...   174   2e-44
gi|207029415 retinoblastoma binding protein 4 isoform b [Homo sa...   167   1e-42
gi|4506439 retinoblastoma binding protein 7 [Homo sapiens]            145   9e-36
gi|207029439 retinoblastoma binding protein 4 isoform c [Homo sa...   120   2e-28
gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]        27   2.6  
gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens]        27   2.6  
gi|31657129 phosphoribosylformylglycinamidine synthase [Homo sap...    27   4.5  
gi|109633022 mucosal vascular addressin cell adhesion molecule 1...    26   7.7  
gi|46389556 endosulfine alpha isoform 5 [Homo sapiens]                 26   7.7  
gi|46389552 endosulfine alpha isoform 2 [Homo sapiens]                 26   7.7  
gi|46389550 endosulfine alpha isoform 1 [Homo sapiens]                 26   7.7  

>gi|169165527 PREDICTED: similar to hCG1643855 [Homo sapiens]
          Length = 103

 Score =  219 bits (559), Expect = 3e-58
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60
           MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1   MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60

Query: 61  FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG 103
           FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG
Sbjct: 61  FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG 103


>gi|239742072 PREDICTED: hypothetical protein LOC391556 [Homo
           sapiens]
          Length = 103

 Score =  219 bits (559), Expect = 3e-58
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60
           MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1   MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60

Query: 61  FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG 103
           FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG
Sbjct: 61  FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG 103


>gi|5032027 retinoblastoma binding protein 4 isoform a [Homo
           sapiens]
          Length = 425

 Score =  174 bits (440), Expect = 2e-44
 Identities = 86/107 (80%), Positives = 91/107 (85%), Gaps = 4/107 (3%)

Query: 1   MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60
           M +KEAAFD+AVEE VI EEYKIWK NT F YDLVMT ALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1   MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 61  FSSHRLVPGTHTSVEQNHL----VQLPSDDAQLDASHYNSKKGECGG 103
           FS HRLV GTHTS EQNHL    VQLP+DDAQ DASHY+S+KGE GG
Sbjct: 61  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGG 107


>gi|207029415 retinoblastoma binding protein 4 isoform b [Homo
           sapiens]
          Length = 424

 Score =  167 bits (424), Expect = 1e-42
 Identities = 85/107 (79%), Positives = 90/107 (84%), Gaps = 5/107 (4%)

Query: 1   MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60
           M +KEA FD+AVEE VI EEYKIWK NT F YDLVMT ALEWPSLTAQWLPDVTRPEGKD
Sbjct: 1   MADKEA-FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 59

Query: 61  FSSHRLVPGTHTSVEQNHL----VQLPSDDAQLDASHYNSKKGECGG 103
           FS HRLV GTHTS EQNHL    VQLP+DDAQ DASHY+S+KGE GG
Sbjct: 60  FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGG 106


>gi|4506439 retinoblastoma binding protein 7 [Homo sapiens]
          Length = 425

 Score =  145 bits (365), Expect = 9e-36
 Identities = 72/107 (67%), Positives = 83/107 (77%), Gaps = 5/107 (4%)

Query: 1   MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60
           M +KE  F++ VEE VI EEYKIWK NT F YDLVMT AL+WPSLT QWLP+VT+PEGKD
Sbjct: 1   MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 59

Query: 61  FSSHRLVPGTHTSVEQNHL----VQLPSDDAQLDASHYNSKKGECGG 103
           ++ H LV GTHTS EQNHL    V +P+DDAQ DASH +S KGE GG
Sbjct: 60  YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGG 106


>gi|207029439 retinoblastoma binding protein 4 isoform c [Homo
           sapiens]
          Length = 390

 Score =  120 bits (301), Expect = 2e-28
 Identities = 59/72 (81%), Positives = 62/72 (86%), Gaps = 4/72 (5%)

Query: 36  MTQALEWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHL----VQLPSDDAQLDA 91
           MT ALEWPSLTAQWLPDVTRPEGKDFS HRLV GTHTS EQNHL    VQLP+DDAQ DA
Sbjct: 1   MTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDA 60

Query: 92  SHYNSKKGECGG 103
           SHY+S+KGE GG
Sbjct: 61  SHYDSEKGEFGG 72


>gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]
          Length = 755

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 41  EWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQ 81
           E P L     P +  P G D +  +L+PG+   V  +H+++
Sbjct: 131 EEPPLPQPVAPALVPPAGGDSTVSQLIPGSEVRVTLDHIIE 171


>gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens]
          Length = 560

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 41  EWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQ 81
           E P L     P +  P G D +  +L+PG+   V  +H+++
Sbjct: 131 EEPPLPQPVAPALVPPAGGDSTVSQLIPGSEVRVTLDHIIE 171


>gi|31657129 phosphoribosylformylglycinamidine synthase [Homo
           sapiens]
          Length = 1338

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 31  PYDLVMTQALEWPSLTAQWLPDVTRPEGKDFSSH-RLVPGTH 71
           P  LV++     P +TA   PD+  PEG+    +  L PG H
Sbjct: 820 PGSLVISAYAVCPDITATVTPDLKHPEGRGHLLYVALSPGQH 861


>gi|109633022 mucosal vascular addressin cell adhesion molecule 1
           isoform a precursor [Homo sapiens]
          Length = 382

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 37  TQALEWPSLTAQWLPDVTRPEGKDFSSHRLVP---GTHT 72
           T + E P  T+Q  PD T PE  D +S    P    THT
Sbjct: 243 TTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHT 281


>gi|46389556 endosulfine alpha isoform 5 [Homo sapiens]
          Length = 133

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/66 (24%), Positives = 28/66 (42%)

Query: 35  VMTQALEWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHY 94
           ++ +  E   L A++     +P G DF   RL  G + S+  + L+         D+  Y
Sbjct: 23  ILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHWSVLLCADEMQKYFDSGDY 82

Query: 95  NSKKGE 100
           N  K +
Sbjct: 83  NMAKAK 88


>gi|46389552 endosulfine alpha isoform 2 [Homo sapiens]
          Length = 133

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/66 (24%), Positives = 28/66 (42%)

Query: 35  VMTQALEWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHY 94
           ++ +  E   L A++     +P G DF   RL  G + S+  + L+         D+  Y
Sbjct: 27  ILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHWSVLLCADEMQKYFDSGDY 86

Query: 95  NSKKGE 100
           N  K +
Sbjct: 87  NMAKAK 92


>gi|46389550 endosulfine alpha isoform 1 [Homo sapiens]
          Length = 137

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/66 (24%), Positives = 28/66 (42%)

Query: 35  VMTQALEWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHY 94
           ++ +  E   L A++     +P G DF   RL  G + S+  + L+         D+  Y
Sbjct: 27  ILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHWSVLLCADEMQKYFDSGDY 86

Query: 95  NSKKGE 100
           N  K +
Sbjct: 87  NMAKAK 92


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.128    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,380,416
Number of Sequences: 37866
Number of extensions: 171700
Number of successful extensions: 353
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 14
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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