BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169165527 PREDICTED: similar to hCG1643855 [Homo sapiens] (103 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169165527 PREDICTED: similar to hCG1643855 [Homo sapiens] 219 3e-58 gi|239742072 PREDICTED: hypothetical protein LOC391556 [Homo sap... 219 3e-58 gi|5032027 retinoblastoma binding protein 4 isoform a [Homo sapi... 174 2e-44 gi|207029415 retinoblastoma binding protein 4 isoform b [Homo sa... 167 1e-42 gi|4506439 retinoblastoma binding protein 7 [Homo sapiens] 145 9e-36 gi|207029439 retinoblastoma binding protein 4 isoform c [Homo sa... 120 2e-28 gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens] 27 2.6 gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens] 27 2.6 gi|31657129 phosphoribosylformylglycinamidine synthase [Homo sap... 27 4.5 gi|109633022 mucosal vascular addressin cell adhesion molecule 1... 26 7.7 gi|46389556 endosulfine alpha isoform 5 [Homo sapiens] 26 7.7 gi|46389552 endosulfine alpha isoform 2 [Homo sapiens] 26 7.7 gi|46389550 endosulfine alpha isoform 1 [Homo sapiens] 26 7.7 >gi|169165527 PREDICTED: similar to hCG1643855 [Homo sapiens] Length = 103 Score = 219 bits (559), Expect = 3e-58 Identities = 103/103 (100%), Positives = 103/103 (100%) Query: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD Sbjct: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60 Query: 61 FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG 103 FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG Sbjct: 61 FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG 103 >gi|239742072 PREDICTED: hypothetical protein LOC391556 [Homo sapiens] Length = 103 Score = 219 bits (559), Expect = 3e-58 Identities = 103/103 (100%), Positives = 103/103 (100%) Query: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD Sbjct: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60 Query: 61 FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG 103 FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG Sbjct: 61 FSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHYNSKKGECGG 103 >gi|5032027 retinoblastoma binding protein 4 isoform a [Homo sapiens] Length = 425 Score = 174 bits (440), Expect = 2e-44 Identities = 86/107 (80%), Positives = 91/107 (85%), Gaps = 4/107 (3%) Query: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60 M +KEAAFD+AVEE VI EEYKIWK NT F YDLVMT ALEWPSLTAQWLPDVTRPEGKD Sbjct: 1 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60 Query: 61 FSSHRLVPGTHTSVEQNHL----VQLPSDDAQLDASHYNSKKGECGG 103 FS HRLV GTHTS EQNHL VQLP+DDAQ DASHY+S+KGE GG Sbjct: 61 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGG 107 >gi|207029415 retinoblastoma binding protein 4 isoform b [Homo sapiens] Length = 424 Score = 167 bits (424), Expect = 1e-42 Identities = 85/107 (79%), Positives = 90/107 (84%), Gaps = 5/107 (4%) Query: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60 M +KEA FD+AVEE VI EEYKIWK NT F YDLVMT ALEWPSLTAQWLPDVTRPEGKD Sbjct: 1 MADKEA-FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 59 Query: 61 FSSHRLVPGTHTSVEQNHL----VQLPSDDAQLDASHYNSKKGECGG 103 FS HRLV GTHTS EQNHL VQLP+DDAQ DASHY+S+KGE GG Sbjct: 60 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGG 106 >gi|4506439 retinoblastoma binding protein 7 [Homo sapiens] Length = 425 Score = 145 bits (365), Expect = 9e-36 Identities = 72/107 (67%), Positives = 83/107 (77%), Gaps = 5/107 (4%) Query: 1 MTNKEAAFDNAVEEHVIKEEYKIWKNNTSFPYDLVMTQALEWPSLTAQWLPDVTRPEGKD 60 M +KE F++ VEE VI EEYKIWK NT F YDLVMT AL+WPSLT QWLP+VT+PEGKD Sbjct: 1 MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD 59 Query: 61 FSSHRLVPGTHTSVEQNHL----VQLPSDDAQLDASHYNSKKGECGG 103 ++ H LV GTHTS EQNHL V +P+DDAQ DASH +S KGE GG Sbjct: 60 YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGG 106 >gi|207029439 retinoblastoma binding protein 4 isoform c [Homo sapiens] Length = 390 Score = 120 bits (301), Expect = 2e-28 Identities = 59/72 (81%), Positives = 62/72 (86%), Gaps = 4/72 (5%) Query: 36 MTQALEWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHL----VQLPSDDAQLDA 91 MT ALEWPSLTAQWLPDVTRPEGKDFS HRLV GTHTS EQNHL VQLP+DDAQ DA Sbjct: 1 MTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDA 60 Query: 92 SHYNSKKGECGG 103 SHY+S+KGE GG Sbjct: 61 SHYDSEKGEFGG 72 >gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens] Length = 755 Score = 27.3 bits (59), Expect = 2.6 Identities = 12/41 (29%), Positives = 21/41 (51%) Query: 41 EWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQ 81 E P L P + P G D + +L+PG+ V +H+++ Sbjct: 131 EEPPLPQPVAPALVPPAGGDSTVSQLIPGSEVRVTLDHIIE 171 >gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens] Length = 560 Score = 27.3 bits (59), Expect = 2.6 Identities = 12/41 (29%), Positives = 21/41 (51%) Query: 41 EWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQ 81 E P L P + P G D + +L+PG+ V +H+++ Sbjct: 131 EEPPLPQPVAPALVPPAGGDSTVSQLIPGSEVRVTLDHIIE 171 >gi|31657129 phosphoribosylformylglycinamidine synthase [Homo sapiens] Length = 1338 Score = 26.6 bits (57), Expect = 4.5 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 31 PYDLVMTQALEWPSLTAQWLPDVTRPEGKDFSSH-RLVPGTH 71 P LV++ P +TA PD+ PEG+ + L PG H Sbjct: 820 PGSLVISAYAVCPDITATVTPDLKHPEGRGHLLYVALSPGQH 861 >gi|109633022 mucosal vascular addressin cell adhesion molecule 1 isoform a precursor [Homo sapiens] Length = 382 Score = 25.8 bits (55), Expect = 7.7 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Query: 37 TQALEWPSLTAQWLPDVTRPEGKDFSSHRLVP---GTHT 72 T + E P T+Q PD T PE D +S P THT Sbjct: 243 TTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHT 281 >gi|46389556 endosulfine alpha isoform 5 [Homo sapiens] Length = 133 Score = 25.8 bits (55), Expect = 7.7 Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 35 VMTQALEWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHY 94 ++ + E L A++ +P G DF RL G + S+ + L+ D+ Y Sbjct: 23 ILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHWSVLLCADEMQKYFDSGDY 82 Query: 95 NSKKGE 100 N K + Sbjct: 83 NMAKAK 88 >gi|46389552 endosulfine alpha isoform 2 [Homo sapiens] Length = 133 Score = 25.8 bits (55), Expect = 7.7 Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 35 VMTQALEWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHY 94 ++ + E L A++ +P G DF RL G + S+ + L+ D+ Y Sbjct: 27 ILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHWSVLLCADEMQKYFDSGDY 86 Query: 95 NSKKGE 100 N K + Sbjct: 87 NMAKAK 92 >gi|46389550 endosulfine alpha isoform 1 [Homo sapiens] Length = 137 Score = 25.8 bits (55), Expect = 7.7 Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 35 VMTQALEWPSLTAQWLPDVTRPEGKDFSSHRLVPGTHTSVEQNHLVQLPSDDAQLDASHY 94 ++ + E L A++ +P G DF RL G + S+ + L+ D+ Y Sbjct: 27 ILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHWSVLLCADEMQKYFDSGDY 86 Query: 95 NSKKGE 100 N K + Sbjct: 87 NMAKAK 92 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.311 0.128 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,380,416 Number of Sequences: 37866 Number of extensions: 171700 Number of successful extensions: 353 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 337 Number of HSP's gapped (non-prelim): 14 length of query: 103 length of database: 18,247,518 effective HSP length: 74 effective length of query: 29 effective length of database: 15,445,434 effective search space: 447917586 effective search space used: 447917586 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.