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Search of human proteins with 169164492
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169164492 PREDICTED: similar to hCG2040272 [Homo sapiens]
(164 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169164492 PREDICTED: similar to hCG2040272 [Homo sapiens] 340 4e-94
gi|169164903 PREDICTED: similar to hCG2040272 [Homo sapiens] 340 4e-94
gi|169163530 PREDICTED: similar to endosulfine alpha [Homo sapiens] 338 2e-93
gi|46389554 endosulfine alpha isoform 4 [Homo sapiens] 143 6e-35
gi|4758272 endosulfine alpha isoform 3 [Homo sapiens] 143 6e-35
gi|46389560 endosulfine alpha isoform 7 [Homo sapiens] 141 3e-34
gi|46389558 endosulfine alpha isoform 6 [Homo sapiens] 141 3e-34
gi|46389552 endosulfine alpha isoform 2 [Homo sapiens] 133 8e-32
gi|46389550 endosulfine alpha isoform 1 [Homo sapiens] 133 8e-32
gi|46389556 endosulfine alpha isoform 5 [Homo sapiens] 130 4e-31
gi|5729732 cyclic AMP phosphoprotein, 19 kD [Homo sapiens] 116 8e-27
gi|46389562 endosulfine alpha isoform 8 [Homo sapiens] 68 3e-12
gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2... 32 0.32
gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1... 32 0.32
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] 31 0.55
gi|91208420 bassoon protein [Homo sapiens] 30 0.94
gi|150417973 supervillin isoform 2 [Homo sapiens] 30 1.2
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 29 1.6
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 28 3.6
gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom... 28 3.6
gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo... 28 3.6
gi|148596992 heart alpha-kinase [Homo sapiens] 28 3.6
gi|148612857 sickle tail isoform 3 [Homo sapiens] 27 6.1
gi|148612813 sickle tail isoform 2 [Homo sapiens] 27 6.1
>gi|169164492 PREDICTED: similar to hCG2040272 [Homo sapiens]
Length = 164
Score = 340 bits (871), Expect = 4e-94
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MEVGQKDNDSGKTLEMKAVVEDGGPWRDVHYCGLHLEGGLYGPSYAPETQSYHIPVTRKR 60
MEVGQKDNDSGKTLEMKAVVEDGGPWRDVHYCGLHLEGGLYGPSYAPETQSYHIPVTRKR
Sbjct: 1 MEVGQKDNDSGKTLEMKAVVEDGGPWRDVHYCGLHLEGGLYGPSYAPETQSYHIPVTRKR 60
Query: 61 EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSG 120
EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSG
Sbjct: 61 EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSG 120
Query: 121 DYNMAKAKMKSKQLPSAEPKKNLVTGDHILPHRKSLVITSKLAG 164
DYNMAKAKMKSKQLPSAEPKKNLVTGDHILPHRKSLVITSKLAG
Sbjct: 121 DYNMAKAKMKSKQLPSAEPKKNLVTGDHILPHRKSLVITSKLAG 164
>gi|169164903 PREDICTED: similar to hCG2040272 [Homo sapiens]
Length = 164
Score = 340 bits (871), Expect = 4e-94
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MEVGQKDNDSGKTLEMKAVVEDGGPWRDVHYCGLHLEGGLYGPSYAPETQSYHIPVTRKR 60
MEVGQKDNDSGKTLEMKAVVEDGGPWRDVHYCGLHLEGGLYGPSYAPETQSYHIPVTRKR
Sbjct: 1 MEVGQKDNDSGKTLEMKAVVEDGGPWRDVHYCGLHLEGGLYGPSYAPETQSYHIPVTRKR 60
Query: 61 EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSG 120
EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSG
Sbjct: 61 EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSG 120
Query: 121 DYNMAKAKMKSKQLPSAEPKKNLVTGDHILPHRKSLVITSKLAG 164
DYNMAKAKMKSKQLPSAEPKKNLVTGDHILPHRKSLVITSKLAG
Sbjct: 121 DYNMAKAKMKSKQLPSAEPKKNLVTGDHILPHRKSLVITSKLAG 164
>gi|169163530 PREDICTED: similar to endosulfine alpha [Homo sapiens]
Length = 164
Score = 338 bits (866), Expect = 2e-93
Identities = 163/164 (99%), Positives = 164/164 (100%)
Query: 1 MEVGQKDNDSGKTLEMKAVVEDGGPWRDVHYCGLHLEGGLYGPSYAPETQSYHIPVTRKR 60
MEVGQKDNDSGKTLEMKAVVEDGGPWRDVHYCGLHLEGGLYGPSYAPETQSYHIPVTRKR
Sbjct: 1 MEVGQKDNDSGKTLEMKAVVEDGGPWRDVHYCGLHLEGGLYGPSYAPETQSYHIPVTRKR 60
Query: 61 EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSG 120
EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYL+LGQEPGGSNFLMKRLQKGKRYFVSG
Sbjct: 61 EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLSLGQEPGGSNFLMKRLQKGKRYFVSG 120
Query: 121 DYNMAKAKMKSKQLPSAEPKKNLVTGDHILPHRKSLVITSKLAG 164
DYNMAKAKMKSKQLPSAEPKKNLVTGDHILPHRKSLVITSKLAG
Sbjct: 121 DYNMAKAKMKSKQLPSAEPKKNLVTGDHILPHRKSLVITSKLAG 164
>gi|46389554 endosulfine alpha isoform 4 [Homo sapiens]
Length = 117
Score = 143 bits (361), Expect = 6e-35
Identities = 76/109 (69%), Positives = 88/109 (80%), Gaps = 8/109 (7%)
Query: 61 EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSG 120
E GE++Q Q+KEGIL ER EE KLK+KY +LGQ+PGGS+FLMKRLQKG++YF SG
Sbjct: 12 EETGEEKQDT---QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSG 68
Query: 121 DYNMAKAKMKSKQLPSAEPKKNLVTGDHI-----LPHRKSLVITSKLAG 164
DYNMAKAKMK+KQLPSA P KNLVTGDHI LP RKS ++TSKLAG
Sbjct: 69 DYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 117
>gi|4758272 endosulfine alpha isoform 3 [Homo sapiens]
Length = 121
Score = 143 bits (361), Expect = 6e-35
Identities = 76/109 (69%), Positives = 88/109 (80%), Gaps = 8/109 (7%)
Query: 61 EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSG 120
E GE++Q Q+KEGIL ER EE KLK+KY +LGQ+PGGS+FLMKRLQKG++YF SG
Sbjct: 12 EETGEEKQDT---QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSG 68
Query: 121 DYNMAKAKMKSKQLPSAEPKKNLVTGDHI-----LPHRKSLVITSKLAG 164
DYNMAKAKMK+KQLPSA P KNLVTGDHI LP RKS ++TSKLAG
Sbjct: 69 DYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 117
>gi|46389560 endosulfine alpha isoform 7 [Homo sapiens]
Length = 113
Score = 141 bits (355), Expect = 3e-34
Identities = 72/96 (75%), Positives = 82/96 (85%), Gaps = 5/96 (5%)
Query: 74 QDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSGDYNMAKAKMKSKQ 133
Q+KEGIL ER EE KLK+KY +LGQ+PGGS+FLMKRLQKG++YF SGDYNMAKAKMK+KQ
Sbjct: 18 QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQ 77
Query: 134 LPSAEPKKNLVTGDHI-----LPHRKSLVITSKLAG 164
LPSA P KNLVTGDHI LP RKS ++TSKLAG
Sbjct: 78 LPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
>gi|46389558 endosulfine alpha isoform 6 [Homo sapiens]
Length = 117
Score = 141 bits (355), Expect = 3e-34
Identities = 72/96 (75%), Positives = 82/96 (85%), Gaps = 5/96 (5%)
Query: 74 QDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSGDYNMAKAKMKSKQ 133
Q+KEGIL ER EE KLK+KY +LGQ+PGGS+FLMKRLQKG++YF SGDYNMAKAKMK+KQ
Sbjct: 18 QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQ 77
Query: 134 LPSAEPKKNLVTGDHI-----LPHRKSLVITSKLAG 164
LPSA P KNLVTGDHI LP RKS ++TSKLAG
Sbjct: 78 LPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
>gi|46389552 endosulfine alpha isoform 2 [Homo sapiens]
Length = 133
Score = 133 bits (334), Expect = 8e-32
Identities = 76/125 (60%), Positives = 88/125 (70%), Gaps = 24/125 (19%)
Query: 61 EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKG------- 113
E GE++Q Q+KEGIL ER EE KLK+KY +LGQ+PGGS+FLMKRLQKG
Sbjct: 12 EETGEEKQDT---QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHW 68
Query: 114 ---------KRYFVSGDYNMAKAKMKSKQLPSAEPKKNLVTGDHI-----LPHRKSLVIT 159
++YF SGDYNMAKAKMK+KQLPSA P KNLVTGDHI LP RKS ++T
Sbjct: 69 SVLLCADEMQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVT 128
Query: 160 SKLAG 164
SKLAG
Sbjct: 129 SKLAG 133
>gi|46389550 endosulfine alpha isoform 1 [Homo sapiens]
Length = 137
Score = 133 bits (334), Expect = 8e-32
Identities = 76/125 (60%), Positives = 88/125 (70%), Gaps = 24/125 (19%)
Query: 61 EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKG------- 113
E GE++Q Q+KEGIL ER EE KLK+KY +LGQ+PGGS+FLMKRLQKG
Sbjct: 12 EETGEEKQDT---QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHW 68
Query: 114 ---------KRYFVSGDYNMAKAKMKSKQLPSAEPKKNLVTGDHI-----LPHRKSLVIT 159
++YF SGDYNMAKAKMK+KQLPSA P KNLVTGDHI LP RKS ++T
Sbjct: 69 SVLLCADEMQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVT 128
Query: 160 SKLAG 164
SKLAG
Sbjct: 129 SKLAG 133
>gi|46389556 endosulfine alpha isoform 5 [Homo sapiens]
Length = 133
Score = 130 bits (328), Expect = 4e-31
Identities = 72/112 (64%), Positives = 82/112 (73%), Gaps = 21/112 (18%)
Query: 74 QDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKG----------------KRYF 117
Q+KEGIL ER EE KLK+KY +LGQ+PGGS+FLMKRLQKG ++YF
Sbjct: 18 QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHWSVLLCADEMQKYF 77
Query: 118 VSGDYNMAKAKMKSKQLPSAEPKKNLVTGDHI-----LPHRKSLVITSKLAG 164
SGDYNMAKAKMK+KQLPSA P KNLVTGDHI LP RKS ++TSKLAG
Sbjct: 78 DSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 129
>gi|5729732 cyclic AMP phosphoprotein, 19 kD [Homo sapiens]
Length = 112
Score = 116 bits (291), Expect = 8e-27
Identities = 62/108 (57%), Positives = 78/108 (72%), Gaps = 6/108 (5%)
Query: 62 PCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSGD 121
P + + +M+DK E+ EE KLK++Y +LGQ+PGGS+FL KRLQKG++YF SGD
Sbjct: 6 PEAASAEEQKEMEDKV-TSPEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDSGD 64
Query: 122 YNMAKAKMKSKQLPSAEPKKNLVTGDHI-----LPHRKSLVITSKLAG 164
YNMAKAKMK+KQLP+A P K VTGDHI LP RK ++ SKLAG
Sbjct: 65 YNMAKAKMKNKQLPTAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG 112
>gi|46389562 endosulfine alpha isoform 8 [Homo sapiens]
Length = 105
Score = 68.2 bits (165), Expect = 3e-12
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 3/53 (5%)
Query: 61 EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKG 113
E GE++Q Q+KEGIL ER EE KLK+KY +LGQ+PGGS+FLMKRLQKG
Sbjct: 12 EETGEEKQDT---QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG 61
>gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2
[Homo sapiens]
Length = 994
Score = 31.6 bits (70), Expect = 0.32
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 45 YAPETQSYHIPVTRKREPCGED----QQGETKMQDKEGILSERVEEPKLKSKYLNLGQEP 100
+APE Y V+ K PC E+ Q+ + Q+K+ S+YL EP
Sbjct: 117 FAPEDHGYGTEVSTKNTPCSENKLDIQEKKLINQEKKMFRIRNRSYIDRDSEYLLQENEP 176
Query: 101 GGS--NFLMKRLQKGKRYFVSGDYNMAKAKMKSKQLPSAEPKKNLV 144
G+ L++ LQK K D + + ++LPS +K LV
Sbjct: 177 DGTLDQKLLEDLQKKK-----NDLRYIEMQHFREKLPSYGMQKELV 217
>gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1
[Homo sapiens]
Length = 1008
Score = 31.6 bits (70), Expect = 0.32
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 45 YAPETQSYHIPVTRKREPCGED----QQGETKMQDKEGILSERVEEPKLKSKYLNLGQEP 100
+APE Y V+ K PC E+ Q+ + Q+K+ S+YL EP
Sbjct: 117 FAPEDHGYGTEVSTKNTPCSENKLDIQEKKLINQEKKMFRIRNRSYIDRDSEYLLQENEP 176
Query: 101 GGS--NFLMKRLQKGKRYFVSGDYNMAKAKMKSKQLPSAEPKKNLV 144
G+ L++ LQK K D + + ++LPS +K LV
Sbjct: 177 DGTLDQKLLEDLQKKK-----NDLRYIEMQHFREKLPSYGMQKELV 217
>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
Length = 1217
Score = 30.8 bits (68), Expect = 0.55
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 74 QDKEGILSERVEE----PKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVSGDYNMAKAKM 129
++KE + +ER E+ KL+ K +L E G++ KRL K ++ + K +
Sbjct: 286 EEKEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLE------KIEE 339
Query: 130 KSKQLPSAEPKKNLV 144
K K+L EPK N V
Sbjct: 340 KQKELAETEPKFNSV 354
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 30.0 bits (66), Expect = 0.94
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 31 YCGLHLEGGLYGPSYAPETQSYHIPVTRKREPCGEDQQGETKMQDKEGILSERVEEPKLK 90
Y L+ GL GP+ P T++ + + E + TK++ K+ L E +E K
Sbjct: 2918 YAASLLQRGLTGPTTVPATKASLLRELDRDLRLVEHES--TKLRKKQAELDEEEKEIDAK 2975
Query: 91 SKYLNLG 97
KYL LG
Sbjct: 2976 LKYLELG 2982
>gi|150417973 supervillin isoform 2 [Homo sapiens]
Length = 2214
Score = 29.6 bits (65), Expect = 1.2
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 54 IPVTRKREPCGEDQQGETKM---QDKEGILSER--VEEPKLKSKYLNLGQEPGGSNFLMK 108
+P ++ P GE +TK+ Q + L+ P+LKS+ + PG + +
Sbjct: 573 LPSSKTEGPYGEISMLDTKVSVAQLRSAFLASANACRRPELKSRVERSAEGPGLPTGVER 632
Query: 109 RL--QKGKRYFVSGDYNMAKAKMKSKQLPSAEPKKN 142
+K +RYF G+ + +++ + SAE K++
Sbjct: 633 ERGSRKPRRYFSPGESRKTSERFRTQPITSAERKES 668
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 29.3 bits (64), Expect = 1.6
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 35 HLEGGLYGPSYAPETQSYHIPVTRKREPCGEDQQGETKMQDKEGILSERVEEPKLKS 91
H + L+ Q Y + + RE C +Q+ ET ++DKE I +EE K+
Sbjct: 621 HQQDALWTEKLQVLKQQYQTEMEKLREKC--EQEKETLLKDKEIIFQAHIEEMNEKT 675
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 28.1 bits (61), Expect = 3.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 106 LMKRLQKGKRYFVSGDYNMAKAKMKSKQLPSAEPKKNL 143
+ +RL++G F +GDY MA +S A+P + L
Sbjct: 23 IAQRLEEGDEAFRAGDYEMAAELFRSMLAGLAQPDRGL 60
>gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Homo
sapiens]
Length = 728
Score = 28.1 bits (61), Expect = 3.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 37 EGGLYGPSYAPETQSYHIPVTRKREPCGEDQQGETKMQ-DKEGILSERVEEP 87
E G + P PE I + + E GE ++ E +++ D+E E+ EEP
Sbjct: 226 EQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEP 277
>gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo
sapiens]
Length = 793
Score = 28.1 bits (61), Expect = 3.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 37 EGGLYGPSYAPETQSYHIPVTRKREPCGEDQQGETKMQ-DKEGILSERVEEP 87
E G + P PE I + + E GE ++ E +++ D+E E+ EEP
Sbjct: 291 EQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEP 342
>gi|148596992 heart alpha-kinase [Homo sapiens]
Length = 2170
Score = 28.1 bits (61), Expect = 3.6
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 60 REPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKGKRYFVS 119
R PC +G + ++S ++EEPK++ + + P S+ K L F+S
Sbjct: 1607 RFPCTSSPEGNVT----DFLISHKMEEPKIEVLQIGETKPPSSSSSSAKTLA-----FIS 1657
Query: 120 GDYNMAKA 127
G+ + KA
Sbjct: 1658 GERELEKA 1665
>gi|148612857 sickle tail isoform 3 [Homo sapiens]
Length = 1309
Score = 27.3 bits (59), Expect = 6.1
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 40 LYGPSYAPETQSYHIPVTRKREPCGEDQQG-ETKMQD 75
L G S AP+T +P++ K P D+ G ++K+QD
Sbjct: 1102 LQGSSGAPQTSRMPVPMSAKNRPGTLDKPGKQSKLQD 1138
>gi|148612813 sickle tail isoform 2 [Homo sapiens]
Length = 1264
Score = 27.3 bits (59), Expect = 6.1
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 40 LYGPSYAPETQSYHIPVTRKREPCGEDQQG-ETKMQD 75
L G S AP+T +P++ K P D+ G ++K+QD
Sbjct: 1057 LQGSSGAPQTSRMPVPMSAKNRPGTLDKPGKQSKLQD 1093
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,955,519
Number of Sequences: 37866
Number of extensions: 326640
Number of successful extensions: 648
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 622
Number of HSP's gapped (non-prelim): 26
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.