Search of human proteins with 169163579

Search of human proteins with 169163579

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169163579 PREDICTED: similar to hCG2042412 [Homo sapiens]
         (112 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169163579 PREDICTED: similar to hCG2042412 [Homo sapiens]          237   1e-63
gi|113412765 PREDICTED: similar to hCG2042412 [Homo sapiens]          236   4e-63
gi|239747664 PREDICTED: similar to hCG2042412 [Homo sapiens]          164   1e-41
gi|194239668 SHC (Src homology 2 domain containing) transforming...    28   2.1  
gi|194239664 SHC (Src homology 2 domain containing) transforming...    28   2.1  
gi|194239662 SHC (Src homology 2 domain containing) transforming...    28   2.1  
gi|32261324 SHC (Src homology 2 domain containing) transforming ...    28   2.1  
gi|222446609 rai-like protein [Homo sapiens]                           27   2.7  
gi|208609985 SH2 domain containing 3A [Homo sapiens]                   27   3.5  
gi|53832005 calcium channel, voltage-dependent, R type, alpha 1E...    27   3.5  
gi|118600977 C3 and PZP-like, alpha-2-macroglobulin domain conta...    27   4.6  
gi|20270253 activating signal cointegrator 1 complex subunit 2 [...    27   4.6  
gi|63253298 spermidine synthase [Homo sapiens]                         26   6.0  
gi|224586793 src homology 2 domain-containing transforming prote...    26   7.8  
gi|20149688 TRM2 tRNA methyltransferase 2 homolog B [Homo sapiens]     26   7.8  
gi|221316749 carboxypeptidase A3 precursor [Homo sapiens]              26   7.8  
gi|157384986 transducin-like enhancer protein 3 isoform b [Homo ...    26   7.8  
gi|157384984 transducin-like enhancer protein 3 isoform c [Homo ...    26   7.8  
gi|157384982 transducin-like enhancer protein 3 isoform a [Homo ...    26   7.8  
gi|32698950 hypothetical protein LOC283870 [Homo sapiens]              26   7.8  

>gi|169163579 PREDICTED: similar to hCG2042412 [Homo sapiens]
          Length = 112

 Score =  237 bits (605), Expect = 1e-63
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MPSRGILGRLKFTEHKVQGMDGHLWGWTEEHGLCPATTYVVLLVFQVKRLAAEQRNQDLL 60
           MPSRGILGRLKFTEHKVQGMDGHLWGWTEEHGLCPATTYVVLLVFQVKRLAAEQRNQDLL
Sbjct: 1   MPSRGILGRLKFTEHKVQGMDGHLWGWTEEHGLCPATTYVVLLVFQVKRLAAEQRNQDLL 60

Query: 61  ILSSGDPSSNDIISCCHKDPKSGLLGTSHAPHCSFLHPRDILTLLRLRCAQA 112
           ILSSGDPSSNDIISCCHKDPKSGLLGTSHAPHCSFLHPRDILTLLRLRCAQA
Sbjct: 61  ILSSGDPSSNDIISCCHKDPKSGLLGTSHAPHCSFLHPRDILTLLRLRCAQA 112


>gi|113412765 PREDICTED: similar to hCG2042412 [Homo sapiens]
          Length = 112

 Score =  236 bits (601), Expect = 4e-63
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MPSRGILGRLKFTEHKVQGMDGHLWGWTEEHGLCPATTYVVLLVFQVKRLAAEQRNQDLL 60
           MPSRGILGRLKFTEHKVQGMDGHLWGWTEEHGLCPATTYVVLLVFQVKRLAAEQRNQDLL
Sbjct: 1   MPSRGILGRLKFTEHKVQGMDGHLWGWTEEHGLCPATTYVVLLVFQVKRLAAEQRNQDLL 60

Query: 61  ILSSGDPSSNDIISCCHKDPKSGLLGTSHAPHCSFLHPRDILTLLRLRCAQ 111
           ILSSGDPSSNDIISCCHKDPKSGLLGTSHAPHCSFLHPRDILTLLRLRCAQ
Sbjct: 61  ILSSGDPSSNDIISCCHKDPKSGLLGTSHAPHCSFLHPRDILTLLRLRCAQ 111


>gi|239747664 PREDICTED: similar to hCG2042412 [Homo sapiens]
          Length = 336

 Score =  164 bits (416), Expect = 1e-41
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 33  LCPATTYVVLLVFQVKRLAAEQRNQDLLILSSGDPSSNDIISCCHKDPKSGLLGTSHAPH 92
           LCPATTYVVLLVFQVKRLAAEQRNQDLLILSSGDPSSNDIISCCHKDPKSGLLGTSHAPH
Sbjct: 257 LCPATTYVVLLVFQVKRLAAEQRNQDLLILSSGDPSSNDIISCCHKDPKSGLLGTSHAPH 316

Query: 93  CSFLHPRDILTLLRLRCAQ 111
           CSFLHPRDILTLLRLRCAQ
Sbjct: 317 CSFLHPRDILTLLRLRCAQ 335


>gi|194239668 SHC (Src homology 2 domain containing) transforming
           protein 1 isoform 4 [Homo sapiens]
          Length = 473

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 33  LCPATTYVVLLVFQVKRLAAEQRNQDLLILSSGDPSSNDIISCCHKDP 80
           L  +T+ + L+    K++ A    Q +   S GDP + + ++   KDP
Sbjct: 124 LTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDP 171


>gi|194239664 SHC (Src homology 2 domain containing) transforming
           protein 1 isoform 3 [Homo sapiens]
          Length = 584

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 33  LCPATTYVVLLVFQVKRLAAEQRNQDLLILSSGDPSSNDIISCCHKDP 80
           L  +T+ + L+    K++ A    Q +   S GDP + + ++   KDP
Sbjct: 234 LTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDP 281


>gi|194239662 SHC (Src homology 2 domain containing) transforming
           protein 1 isoform 1 [Homo sapiens]
          Length = 583

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 33  LCPATTYVVLLVFQVKRLAAEQRNQDLLILSSGDPSSNDIISCCHKDP 80
           L  +T+ + L+    K++ A    Q +   S GDP + + ++   KDP
Sbjct: 234 LTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDP 281


>gi|32261324 SHC (Src homology 2 domain containing) transforming
           protein 1 isoform 2 [Homo sapiens]
          Length = 474

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 33  LCPATTYVVLLVFQVKRLAAEQRNQDLLILSSGDPSSNDIISCCHKDP 80
           L  +T+ + L+    K++ A    Q +   S GDP + + ++   KDP
Sbjct: 124 LTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDP 171


>gi|222446609 rai-like protein [Homo sapiens]
          Length = 630

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 36  ATTYVVLLVFQVKRLAAEQRNQDLLILSSGDPSSNDIISCCHKDP 80
           +T  + L+    +++ A    Q +   S GDP + D ++   KDP
Sbjct: 267 STCSLTLMNLDNQQIIANHHMQSISFASGGDPDTTDYVAYVAKDP 311


>gi|208609985 SH2 domain containing 3A [Homo sapiens]
          Length = 576

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 43 LVFQVKRLAAEQRNQDLLILSSGDPSSNDIISC 75
          L+ + K  A  Q+N D L+ +SG    N +ISC
Sbjct: 19 LLSRQKAEALLQQNGDFLVRASGSRGGNPVISC 51


>gi|53832005 calcium channel, voltage-dependent, R type, alpha 1E
            subunit [Homo sapiens]
          Length = 2270

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 78   KDPKSGLLGTSHAPHCSFLHPRDILTL 104
            +DP SGL G S  P  S L P+DI  L
Sbjct: 1923 QDPVSGLSGRSGYPSMSPLSPQDIFQL 1949


>gi|118600977 C3 and PZP-like, alpha-2-macroglobulin domain containing
            8 [Homo sapiens]
          Length = 1932

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 31   HGLCPATTYVVLLVFQVKRLAAEQR---NQDLLILSSGDPSSNDIISCCHKDPKSGLLGT 87
            HG  P T YVV+ + +    + E+R   ++    L S  P + D  SC        LL +
Sbjct: 1313 HGTVPLTAYVVVALLETGTASEEERGSTDKARHFLESAAPLAMDPYSCALTTYALTLLRS 1372

Query: 88   SHAP 91
              AP
Sbjct: 1373 PAAP 1376


>gi|20270253 activating signal cointegrator 1 complex subunit 2
          [Homo sapiens]
          Length = 757

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 71 DIISCCHKDPKSGLLGTSHAPH 92
          D +   HKDPK+G L TS A H
Sbjct: 7  DQLQITHKDPKTGKLRTSPALH 28


>gi|63253298 spermidine synthase [Homo sapiens]
          Length = 302

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 43  LVFQVKRLAAEQRN--QDLLILSSGDPSS----NDIISCCHKDPKSGLLGTSHAPHCSFL 96
           L  QV++L   +R+  QD+L+  S    +    + +I C  +D  S     ++ P CS  
Sbjct: 33  LSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHP 92

Query: 97  HPRDILTL 104
           +PR +L +
Sbjct: 93  NPRKVLII 100


>gi|224586793 src homology 2 domain-containing transforming protein
           C3 [Homo sapiens]
          Length = 594

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 48  KRLAAEQRNQDLLILSSGDPSSNDIISCCHKDP 80
           K++ A    + +   S GDP + D ++   KDP
Sbjct: 242 KQIIANHHMRSISFASGGDPDTTDYVAYVAKDP 274


>gi|20149688 TRM2 tRNA methyltransferase 2 homolog B [Homo sapiens]
          Length = 504

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 13/45 (28%)

Query: 65  GDPSSNDIISCCHKDPKSGLLGT-------------SHAPHCSFL 96
           G+ + N I  CC  DP   LLG               H PHC  +
Sbjct: 455 GESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELV 499


>gi|221316749 carboxypeptidase A3 precursor [Homo sapiens]
          Length = 417

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 6   ILGRLKFTEHKVQGMDGHLWGWTE 29
           +L R+ F    V  +DG++W WT+
Sbjct: 206 LLDRMNFYILPVFNVDGYIWSWTK 229


>gi|157384986 transducin-like enhancer protein 3 isoform b [Homo
           sapiens]
          Length = 769

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/46 (23%), Positives = 25/46 (54%)

Query: 46  QVKRLAAEQRNQDLLILSSGDPSSNDIISCCHKDPKSGLLGTSHAP 91
           + K+  AE+++      S GD S + ++   ++DP +  +  +H+P
Sbjct: 223 EAKKRKAEEKDSLSRYDSDGDKSDDLVVDVSNEDPATPRVSPAHSP 268


>gi|157384984 transducin-like enhancer protein 3 isoform c [Homo
           sapiens]
          Length = 760

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/46 (23%), Positives = 25/46 (54%)

Query: 46  QVKRLAAEQRNQDLLILSSGDPSSNDIISCCHKDPKSGLLGTSHAP 91
           + K+  AE+++      S GD S + ++   ++DP +  +  +H+P
Sbjct: 223 EAKKRKAEEKDSLSRYDSDGDKSDDLVVDVSNEDPATPRVSPAHSP 268


>gi|157384982 transducin-like enhancer protein 3 isoform a [Homo
           sapiens]
          Length = 772

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/46 (23%), Positives = 25/46 (54%)

Query: 46  QVKRLAAEQRNQDLLILSSGDPSSNDIISCCHKDPKSGLLGTSHAP 91
           + K+  AE+++      S GD S + ++   ++DP +  +  +H+P
Sbjct: 223 EAKKRKAEEKDSLSRYDSDGDKSDDLVVDVSNEDPATPRVSPAHSP 268


>gi|32698950 hypothetical protein LOC283870 [Homo sapiens]
          Length = 228

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 74  SCCHKDPKSGLLGTSHAPHCSFLHPRDILTLLRL 107
           SCC + PK G  G    P C       +L LL L
Sbjct: 5   SCCAERPKPGPTGVKTKPSCGGWRAVGLLLLLLL 38


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,566,983
Number of Sequences: 37866
Number of extensions: 180812
Number of successful extensions: 393
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 23
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.