Guide to the Human Genome
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Name: LOC727944 Sequence: fasta or formatted (112aa) NCBI GI: 169163579
Description:

PREDICTED: similar to hCG2042412

Not currently referenced in the text

Other entries for this name:
alt prot {112aa} PREDICTED: similar to hCG2042412
alt prot {336aa} PREDICTED: similar to hCG2042412
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          6           2
 C cysteine            4.5          5           2
 D aspartate           5.4          6           1
 E glutamate           3.6          4           2
 F phenylalanine       2.7          3           1
 G glycine             8.0          9           1
 H histidine           6.2          7           1
 I isoleucine          4.5          5           2
 K lysine              4.5          5           1
 L leucine            15.2         17           2
 M methionine          1.8          2           1
 N asparagine          1.8          2           1
 P proline             5.4          6           1
 Q glutamine           4.5          5           1
 R arginine            6.2          7           1
 S serine              8.0          9           2
 T threonine           5.4          6           2
 V valine              4.5          5           2
 W tryptophan          1.8          2           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2042412 
LOC727944             0.995   PREDICTED: similar to hCG2042412 
LOC727944             0.656   PREDICTED: similar to hCG2042412 
SHC1                  0.014   SHC (Src homology 2 domain containing) transforming...
SHC1                  0.014   SHC (Src homology 2 domain containing) transforming...
SHC1                  0.014   SHC (Src homology 2 domain containing) transforming...
SHC1                  0.014   SHC (Src homology 2 domain containing) transforming ...
SHC4                  0.009   rai-like protein 
SH2D3A                0.009   SH2 domain containing 3A 
CACNA1E               0.009   calcium channel, voltage-dependent, R type, alpha 1E...
CPAMD8                0.009   C3 and PZP-like, alpha-2-macroglobulin domain conta...
ASCC2                 0.009   activating signal cointegrator 1 complex subunit 2 [...
SRM                   0.005   spermidine synthase 
SHC3                  0.005   src homology 2 domain-containing transforming prote...
TRMT2B                0.005   TRM2 tRNA methyltransferase 2 homolog B 
CPA3                  0.005   carboxypeptidase A3 precursor 
TLE3                  0.005   transducin-like enhancer protein 3 isoform b 
TLE3                  0.005   transducin-like enhancer protein 3 isoform c 
TLE3                  0.005   transducin-like enhancer protein 3 isoform a 
C16orf79              0.005   hypothetical protein LOC283870 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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