Guide to the Human Genome
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Name: LOC390998 Sequence: fasta or formatted (150aa) NCBI GI: 169162466
Description:

PREDICTED: similar to hCG1644589

Referenced in:

Ribosomes

Other entries for this name:
alt mRNA [150aa] PREDICTED: hypothetical protein LOC390998
alt mRNA [150aa] PREDICTED: similar to hCG1644589
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         19           3
 C cysteine            1.3          2           1
 D aspartate           2.7          4           1
 E glutamate           4.0          6           1
 F phenylalanine       4.7          7           1
 G glycine             8.7         13           1
 H histidine           4.7          7           1
 I isoleucine          4.0          6           1
 K lysine              7.3         11           2
 L leucine             5.3          8           1
 M methionine          2.0          3           1
 N asparagine          2.0          3           1
 P proline             8.7         13           1
 Q glutamine           7.3         11           1
 R arginine            5.3          8           3
 S serine              4.7          7           1
 T threonine           4.0          6           1
 V valine              8.0         12           2
 W tryptophan          1.3          2           1
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1644589 
LOC390998             1.000   PREDICTED: similar to hCG1644589 
LOC390998             1.000   PREDICTED: hypothetical protein LOC390998 
RPL10                 0.531   ribosomal protein L10 
RPL10L                0.524   ribosomal protein L10-like protein 
LOC100293539          0.322   PREDICTED: similar to ribosomal protein 10 
LOC100290275          0.322   PREDICTED: hypothetical protein XP_002347030 
LOC100289349          0.322   PREDICTED: hypothetical protein XP_002342871 
LOC645960             0.308   PREDICTED: similar to hCG1644362 
LOC645960             0.308   PREDICTED: similar to hCG1644362 
LOC645960             0.308   PREDICTED: hypothetical protein LOC645960 
LOC100293009          0.220   PREDICTED: similar to hCG1643102 
LOC100291445          0.220   PREDICTED: hypothetical protein XP_002347772 
LOC100287009          0.220   PREDICTED: hypothetical protein XP_002343545 
PPM1E                 0.028   protein phosphatase 1E 
LOC100292629          0.021   PREDICTED: hypothetical protein 
LOC100289960          0.021   PREDICTED: hypothetical protein XP_002346853 
LOC100286905          0.021   PREDICTED: hypothetical protein XP_002342691 
ZNF628                0.021   zinc finger protein 628 
SEMA6B                0.021   semaphorin 6B precursor 
WFS1                  0.021   wolframin 
WFS1                  0.021   wolframin 
C1orf229              0.017   hypothetical protein LOC388759 
QKI                   0.017   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.017   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.017   quaking homolog, KH domain RNA binding isoform HQK-6...
QKI                   0.017   quaking homolog, KH domain RNA binding isoform HQK-5...
SEC24D                0.017   Sec24-related protein D 
ZNF446                0.017   zinc finger protein 446 
MTX1                  0.014   metaxin 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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