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Search of human proteins with 169161059
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161059 PREDICTED: hypothetical protein [Homo sapiens]
(75 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169161059 PREDICTED: hypothetical protein [Homo sapiens] 160 3e-40
gi|169215257 PREDICTED: hypothetical protein [Homo sapiens] 153 3e-38
gi|239741273 PREDICTED: hypothetical protein XP_002342153 [Homo ... 153 3e-38
gi|239752891 PREDICTED: hypothetical protein [Homo sapiens] 151 1e-37
gi|169161055 PREDICTED: hypothetical protein [Homo sapiens] 151 1e-37
gi|169161052 PREDICTED: hypothetical protein [Homo sapiens] 150 2e-37
gi|239758099 PREDICTED: hypothetical protein XP_002346294 [Homo ... 141 1e-34
gi|169178848 PREDICTED: hypothetical protein [Homo sapiens] 141 1e-34
gi|169174738 PREDICTED: hypothetical protein [Homo sapiens] 119 4e-28
gi|239743760 PREDICTED: hypothetical protein XP_002342953 [Homo ... 119 4e-28
gi|239747784 PREDICTED: hypothetical protein [Homo sapiens] 115 8e-27
gi|169163288 PREDICTED: hypothetical protein [Homo sapiens] 115 8e-27
gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo ... 107 3e-24
gi|18201900 T-box 6 [Homo sapiens] 28 1.6
gi|188595677 integrin, beta 2 precursor [Homo sapiens] 26 6.1
gi|89191865 integrin, beta 2 precursor [Homo sapiens] 26 6.1
gi|6552296 ADP-ribosylation factor-like 4C [Homo sapiens] 26 6.1
gi|239748997 PREDICTED: hypothetical protein XP_002346878 [Homo ... 26 6.1
gi|239743019 PREDICTED: hypothetical protein XP_002342720 [Homo ... 26 6.1
>gi|169161059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 160 bits (404), Expect = 3e-40
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDNLPA 75
PCRWRQGGSTDNLPA
Sbjct: 61 PCRWRQGGSTDNLPA 75
>gi|169215257 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 153 bits (387), Expect = 3e-38
Identities = 73/75 (97%), Positives = 73/75 (97%)
Query: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLA SLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDNLPA 75
PCRWRQGGSTDN PA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|239741273 PREDICTED: hypothetical protein XP_002342153 [Homo
sapiens]
Length = 75
Score = 153 bits (387), Expect = 3e-38
Identities = 73/75 (97%), Positives = 73/75 (97%)
Query: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLA SLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDNLPA 75
PCRWRQGGSTDN PA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|239752891 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 151 bits (381), Expect = 1e-37
Identities = 72/75 (96%), Positives = 72/75 (96%)
Query: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLA SLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDNLPA 75
PCRWRQG STDN PA
Sbjct: 61 PCRWRQGASTDNPPA 75
>gi|169161055 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 151 bits (381), Expect = 1e-37
Identities = 72/75 (96%), Positives = 72/75 (96%)
Query: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLA SLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDNLPA 75
PCRWRQG STDN PA
Sbjct: 61 PCRWRQGASTDNPPA 75
>gi|169161052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 150 bits (380), Expect = 2e-37
Identities = 71/75 (94%), Positives = 73/75 (97%)
Query: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGM+TEEGHCIMLRGLA SLGGTQVICKV+GLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGGSTDNLPA 75
PCRWRQGGSTDN PA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|239758099 PREDICTED: hypothetical protein XP_002346294 [Homo
sapiens]
Length = 75
Score = 141 bits (356), Expect = 1e-34
Identities = 69/75 (92%), Positives = 69/75 (92%)
Query: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLA SLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQ A TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
Query: 61 PCRWRQGGSTDNLPA 75
PCRWRQGGSTD PA
Sbjct: 61 PCRWRQGGSTDKPPA 75
>gi|169178848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 141 bits (356), Expect = 1e-34
Identities = 69/75 (92%), Positives = 69/75 (92%)
Query: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLA SLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQ A TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
Query: 61 PCRWRQGGSTDNLPA 75
PCRWRQGGSTD PA
Sbjct: 61 PCRWRQGGSTDKPPA 75
>gi|169174738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 119 bits (299), Expect = 4e-28
Identities = 59/75 (78%), Positives = 60/75 (80%)
Query: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQ EEGH RGLA LG TQV+CKVVGLPS GFNTSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGGSTDNLPA 75
PCRWRQG STD PA
Sbjct: 61 PCRWRQGDSTDKPPA 75
>gi|239743760 PREDICTED: hypothetical protein XP_002342953 [Homo
sapiens]
Length = 75
Score = 119 bits (299), Expect = 4e-28
Identities = 59/75 (78%), Positives = 60/75 (80%)
Query: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQ EEGH RGLA LG TQV+CKVVGLPS GFNTSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGGSTDNLPA 75
PCRWRQG STD PA
Sbjct: 61 PCRWRQGDSTDKPPA 75
>gi|239747784 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 115 bits (288), Expect = 8e-27
Identities = 58/75 (77%), Positives = 60/75 (80%)
Query: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGH RGLA LG TQV+CKVVG PSS GF+TSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQTEEGHQAQQRGLAPPLGETQVMCKVVGRPSSAGFDTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGGSTDNLPA 75
CRWRQG STD PA
Sbjct: 61 LCRWRQGDSTDKPPA 75
>gi|169163288 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 115 bits (288), Expect = 8e-27
Identities = 58/75 (77%), Positives = 60/75 (80%)
Query: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGH RGLA LG TQV+CKVVG PSS GF+TSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQTEEGHQAQQRGLAPPLGETQVMCKVVGRPSSAGFDTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGGSTDNLPA 75
CRWRQG STD PA
Sbjct: 61 LCRWRQGDSTDKPPA 75
>gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo
sapiens]
Length = 375
Score = 107 bits (266), Expect = 3e-24
Identities = 55/74 (74%), Positives = 57/74 (77%)
Query: 2 VVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHFP 61
VVLGMQTEEG RGLA LGGTQV+CKV GLPSS FNTSSH+LFP TLQGA TH P
Sbjct: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
Query: 62 CRWRQGGSTDNLPA 75
RWRQG STD PA
Sbjct: 362 YRWRQGDSTDKPPA 375
>gi|18201900 T-box 6 [Homo sapiens]
Length = 436
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 40 GFNTSSHLLFPATLQGAPTHFPCR 63
G + ++LL PA GAP+H P R
Sbjct: 343 GPSAEAYLLHPAAFHGAPSHLPTR 366
>gi|188595677 integrin, beta 2 precursor [Homo sapiens]
Length = 769
Score = 26.2 bits (56), Expect = 6.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 7 QTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQG 55
QTE G ++ L GG + +V P IG+ + LL AT G
Sbjct: 218 QTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRNVTRLLVFATDDG 266
>gi|89191865 integrin, beta 2 precursor [Homo sapiens]
Length = 769
Score = 26.2 bits (56), Expect = 6.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 7 QTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQG 55
QTE G ++ L GG + +V P IG+ + LL AT G
Sbjct: 218 QTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRNVTRLLVFATDDG 266
>gi|6552296 ADP-ribosylation factor-like 4C [Homo sapiens]
Length = 192
Score = 26.2 bits (56), Expect = 6.1
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 12 HCIMLRGLAHSLGGTQVICKV-----VGLPSSIGFNTSSHLLFPATLQGAPTHFPCRWRQ 66
H +ML GL S G T V+ ++ V +IGFNT L T +G HF W
Sbjct: 15 HIVML-GL-DSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHF---WDV 69
Query: 67 GG 68
GG
Sbjct: 70 GG 71
>gi|239748997 PREDICTED: hypothetical protein XP_002346878 [Homo
sapiens]
Length = 297
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 5 GMQTEEGHCIMLRGLAHSLGGTQV 28
G+Q EEG C RG A GG Q+
Sbjct: 215 GLQVEEGACRWRRGAADGGGGLQM 238
>gi|239743019 PREDICTED: hypothetical protein XP_002342720 [Homo
sapiens]
Length = 487
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 5 GMQTEEGHCIMLRGLAHSLGGTQV 28
G+Q EEG C RG A GG Q+
Sbjct: 405 GLQVEEGACRWRRGAADGGGGLQM 428
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,427,390
Number of Sequences: 37866
Number of extensions: 142754
Number of successful extensions: 239
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 19
length of query: 75
length of database: 18,247,518
effective HSP length: 47
effective length of query: 28
effective length of database: 16,467,816
effective search space: 461098848
effective search space used: 461098848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.