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Search of human proteins with 157837999
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157837999 hCG23177 [Homo sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157837999 hCG23177 [Homo sapiens] 290 3e-79
gi|157427193 hypothetical protein LOC340286 [Homo sapiens] 245 7e-66
gi|170016091 odz, odd Oz/ten-m homolog 2 [Homo sapiens] 28 2.2
gi|153792230 hypothetical protein LOC57670 [Homo sapiens] 28 2.9
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 27 3.8
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 27 3.8
gi|24308295 GrpE-like 1, mitochondrial [Homo sapiens] 27 3.8
gi|118640875 linker for activation of T cells family member 2 [H... 27 4.9
gi|14702182 linker for activation of T cells family member 2 [Ho... 27 4.9
gi|14702184 linker for activation of T cells family member 2 [Ho... 27 4.9
gi|28395045 Bardet-Biedl syndrome 1 [Homo sapiens] 27 6.4
gi|241896926 protein tyrosine phosphatase, receptor type, H isof... 26 8.4
gi|241896924 protein tyrosine phosphatase, receptor type, H isof... 26 8.4
gi|217272863 prolyl 4-hydroxylase, alpha II subunit isoform 1 pr... 26 8.4
gi|4758868 prolyl 4-hydroxylase, alpha II subunit isoform 1 prec... 26 8.4
>gi|157837999 hCG23177 [Homo sapiens]
Length = 134
Score = 290 bits (741), Expect = 3e-79
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MAGHPKEKVIPDEVHQNQILRELYLKELRTQKLYTQYHVNPLRKIHTVTRKPMSWHDNLE 60
MAGHPKEKVIPDEVHQNQILRELYLKELRTQKLYTQYHVNPLRKIHTVTRKPMSWHDNLE
Sbjct: 1 MAGHPKEKVIPDEVHQNQILRELYLKELRTQKLYTQYHVNPLRKIHTVTRKPMSWHDNLE 60
Query: 61 EPADARFLNLIHHAAQGPRKKYPETQTENQEVGWDLEPLINPERHDRRLNHFRVCSDITL 120
EPADARFLNLIHHAAQGPRKKYPETQTENQEVGWDLEPLINPERHDRRLNHFRVCSDITL
Sbjct: 61 EPADARFLNLIHHAAQGPRKKYPETQTENQEVGWDLEPLINPERHDRRLNHFRVCSDITL 120
Query: 121 YKAKTWGLGDDHHK 134
YKAKTWGLGDDHHK
Sbjct: 121 YKAKTWGLGDDHHK 134
>gi|157427193 hypothetical protein LOC340286 [Homo sapiens]
Length = 135
Score = 245 bits (626), Expect = 7e-66
Identities = 113/135 (83%), Positives = 122/135 (90%), Gaps = 1/135 (0%)
Query: 1 MAGHPKEKVIPDEVHQNQILRELYLKELRTQKLYTQYHVNPLRKIHTVTRKPMSWHDNLE 60
MAGHPKE+V+ DEVHQNQILRELYLKELRTQKL+TQYHVNPLRK+H +TRKPMSWHDNLE
Sbjct: 1 MAGHPKERVVTDEVHQNQILRELYLKELRTQKLHTQYHVNPLRKVHRITRKPMSWHDNLE 60
Query: 61 EPADARFLNLIHHAAQGPRKKYPETQTENQEVGWDLEPLINPERHDRRLNHFRVCSDITL 120
EPADARFLNLIHHAAQGP KKYPE QTENQE+GWD E L++PER D R+NHFRV SDITL
Sbjct: 61 EPADARFLNLIHHAAQGPTKKYPEAQTENQEIGWDSEALVDPERRDHRMNHFRVYSDITL 120
Query: 121 YKAKTWGLG-DDHHK 134
YKAK W LG DD HK
Sbjct: 121 YKAKMWSLGEDDRHK 135
>gi|170016091 odz, odd Oz/ten-m homolog 2 [Homo sapiens]
Length = 2765
Score = 28.1 bits (61), Expect = 2.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 14 VHQNQILRELYLKELRTQKLYTQYHVNPLRKIHTVTRKPMSW 55
VH +L Y + +RT+K+Y + LR I+ +P W
Sbjct: 1832 VHGRNLLSIDYDRNIRTEKIYDDHRKFTLRIIYDQVGRPFLW 1873
>gi|153792230 hypothetical protein LOC57670 [Homo sapiens]
Length = 1884
Score = 27.7 bits (60), Expect = 2.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 69 NLIHHAAQGPRKKYPETQTENQEVGWDLEPLINPERHD 106
NL H QGP YP + TE+ + G LI R +
Sbjct: 1831 NLPHRGLQGPGLGYPTSSTEDLQPGHSSASLIKAIREE 1868
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 27.3 bits (59), Expect = 3.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 6 KEKVIPDEVHQNQILRELYLKELRTQKLYTQYHVNPLRKIHTVTRKPMSWHDNLE 60
K++ I E + Q +E L+ K + +YH + KI +++ +WH N E
Sbjct: 434 KQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTE 488
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 27.3 bits (59), Expect = 3.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 6 KEKVIPDEVHQNQILRELYLKELRTQKLYTQYHVNPLRKIHTVTRKPMSWHDNLE 60
K++ I E + Q +E L+ K + +YH + KI +++ +WH N E
Sbjct: 434 KQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTE 488
>gi|24308295 GrpE-like 1, mitochondrial [Homo sapiens]
Length = 217
Score = 27.3 bits (59), Expect = 3.8
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 5 PKEKVIPDEVHQNQILRELYLKELRTQKLYTQYHVNPLRKI 45
PKE++ D H + L + E++ QK++T++ + L +
Sbjct: 126 PKEEIKDDNPHLKNLYEGLVMTEVQIQKVFTKHGLLKLNPV 166
>gi|118640875 linker for activation of T cells family member 2 [Homo
sapiens]
Length = 243
Score = 26.9 bits (58), Expect = 4.9
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 12 DEVHQNQILRE--LYLKELRTQKLYTQYHVNPLRKIHTVTR-KPMSWHDNLEEPADARFL 68
++++Q + LRE RT L Q PL + + K + ++ +LE+PA +R+
Sbjct: 37 EKIYQQRSLREDQQSFTGSRTYSLVGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQ 96
Query: 69 NLIHHAAQGPRKKY 82
N + G + Y
Sbjct: 97 NFSKGSRHGSEEAY 110
>gi|14702182 linker for activation of T cells family member 2 [Homo
sapiens]
Length = 243
Score = 26.9 bits (58), Expect = 4.9
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 12 DEVHQNQILRE--LYLKELRTQKLYTQYHVNPLRKIHTVTR-KPMSWHDNLEEPADARFL 68
++++Q + LRE RT L Q PL + + K + ++ +LE+PA +R+
Sbjct: 37 EKIYQQRSLREDQQSFTGSRTYSLVGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQ 96
Query: 69 NLIHHAAQGPRKKY 82
N + G + Y
Sbjct: 97 NFSKGSRHGSEEAY 110
>gi|14702184 linker for activation of T cells family member 2 [Homo
sapiens]
Length = 243
Score = 26.9 bits (58), Expect = 4.9
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 12 DEVHQNQILRE--LYLKELRTQKLYTQYHVNPLRKIHTVTR-KPMSWHDNLEEPADARFL 68
++++Q + LRE RT L Q PL + + K + ++ +LE+PA +R+
Sbjct: 37 EKIYQQRSLREDQQSFTGSRTYSLVGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQ 96
Query: 69 NLIHHAAQGPRKKY 82
N + G + Y
Sbjct: 97 NFSKGSRHGSEEAY 110
>gi|28395045 Bardet-Biedl syndrome 1 [Homo sapiens]
Length = 593
Score = 26.6 bits (57), Expect = 6.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 22 ELYLKELRTQKLYTQYHVNPLRKIHTVTRKPMSWH 56
+LYL LR + Y Q + L + T R+P+ H
Sbjct: 455 DLYLLRLRAARAYLQALESSLSPLSTTAREPLKLH 489
>gi|241896926 protein tyrosine phosphatase, receptor type, H isoform
2 precursor [Homo sapiens]
Length = 937
Score = 26.2 bits (56), Expect = 8.4
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 3 GHPKEKVIPDEVHQNQILRELYLKELRTQKLYT--QYH 38
GH + ++ +EV +N +REL L ++ QK + Q+H
Sbjct: 765 GHLRVTLVGEEVMENWTVRELLLLQVEEQKTLSVRQFH 802
>gi|241896924 protein tyrosine phosphatase, receptor type, H isoform
1 precursor [Homo sapiens]
Length = 1115
Score = 26.2 bits (56), Expect = 8.4
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 3 GHPKEKVIPDEVHQNQILRELYLKELRTQKLYT--QYH 38
GH + ++ +EV +N +REL L ++ QK + Q+H
Sbjct: 943 GHLRVTLVGEEVMENWTVRELLLLQVEEQKTLSVRQFH 980
>gi|217272863 prolyl 4-hydroxylase, alpha II subunit isoform 1
precursor [Homo sapiens]
Length = 535
Score = 26.2 bits (56), Expect = 8.4
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 25 LKELRTQKLYTQYHVNPLRKIHTVTR---KPMSWHDNLEEPADARFLNLIHHAAQGPRKK 81
+KE+ KL +P + TV SW + ++P AR + H K
Sbjct: 353 IKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKT 412
Query: 82 YPETQTENQEVGWDLEPLINPERHDRR 108
Q N VG EP + R+D R
Sbjct: 413 AELLQVANYGVGGQYEPHFDFSRNDER 439
>gi|4758868 prolyl 4-hydroxylase, alpha II subunit isoform 1
precursor [Homo sapiens]
Length = 535
Score = 26.2 bits (56), Expect = 8.4
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 25 LKELRTQKLYTQYHVNPLRKIHTVTR---KPMSWHDNLEEPADARFLNLIHHAAQGPRKK 81
+KE+ KL +P + TV SW + ++P AR + H K
Sbjct: 353 IKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKT 412
Query: 82 YPETQTENQEVGWDLEPLINPERHDRR 108
Q N VG EP + R+D R
Sbjct: 413 AELLQVANYGVGGQYEPHFDFSRNDER 439
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,953,526
Number of Sequences: 37866
Number of extensions: 264055
Number of successful extensions: 522
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 15
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.