Search of human proteins with 157427193

Search of human proteins with 157427193

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|157427193 hypothetical protein LOC340286 [Homo sapiens]
         (135 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|157427193 hypothetical protein LOC340286 [Homo sapiens]            287   2e-78
gi|157837999 hCG23177 [Homo sapiens]                                  245   7e-66
gi|116812610 apolipoprotein O-like [Homo sapiens]                      31   0.35 
gi|153792230 hypothetical protein LOC57670 [Homo sapiens]              30   0.78 
gi|150378505 hypothetical protein LOC285343 isoform 1 [Homo sapi...    28   1.7  
gi|138175847 zinc finger protein 228 isoform 1 [Homo sapiens]          27   3.8  
gi|138175821 zinc finger protein 228 isoform 2 [Homo sapiens]          27   3.8  
gi|23199995 Williams Beuren syndrome chromosome region 22 protei...    27   5.0  
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...    27   6.6  
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...    27   6.6  
gi|197276668 spermatogenesis and centriole associated 1 isoform ...    26   8.6  
gi|24308295 GrpE-like 1, mitochondrial [Homo sapiens]                  26   8.6  

>gi|157427193 hypothetical protein LOC340286 [Homo sapiens]
          Length = 135

 Score =  287 bits (735), Expect = 2e-78
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MAGHPKERVVTDEVHQNQILRELYLKELRTQKLHTQYHVNPLRKVHRITRKPMSWHDNLE 60
           MAGHPKERVVTDEVHQNQILRELYLKELRTQKLHTQYHVNPLRKVHRITRKPMSWHDNLE
Sbjct: 1   MAGHPKERVVTDEVHQNQILRELYLKELRTQKLHTQYHVNPLRKVHRITRKPMSWHDNLE 60

Query: 61  EPADARFLNLIHHAAQGPTKKYPEAQTENQEIGWDSEALVDPERRDHRMNHFRVYSDITL 120
           EPADARFLNLIHHAAQGPTKKYPEAQTENQEIGWDSEALVDPERRDHRMNHFRVYSDITL
Sbjct: 61  EPADARFLNLIHHAAQGPTKKYPEAQTENQEIGWDSEALVDPERRDHRMNHFRVYSDITL 120

Query: 121 YKAKMWSLGEDDRHK 135
           YKAKMWSLGEDDRHK
Sbjct: 121 YKAKMWSLGEDDRHK 135


>gi|157837999 hCG23177 [Homo sapiens]
          Length = 134

 Score =  245 bits (626), Expect = 7e-66
 Identities = 113/135 (83%), Positives = 122/135 (90%), Gaps = 1/135 (0%)

Query: 1   MAGHPKERVVTDEVHQNQILRELYLKELRTQKLHTQYHVNPLRKVHRITRKPMSWHDNLE 60
           MAGHPKE+V+ DEVHQNQILRELYLKELRTQKL+TQYHVNPLRK+H +TRKPMSWHDNLE
Sbjct: 1   MAGHPKEKVIPDEVHQNQILRELYLKELRTQKLYTQYHVNPLRKIHTVTRKPMSWHDNLE 60

Query: 61  EPADARFLNLIHHAAQGPTKKYPEAQTENQEIGWDSEALVDPERRDHRMNHFRVYSDITL 120
           EPADARFLNLIHHAAQGP KKYPE QTENQE+GWD E L++PER D R+NHFRV SDITL
Sbjct: 61  EPADARFLNLIHHAAQGPRKKYPETQTENQEVGWDLEPLINPERHDRRLNHFRVCSDITL 120

Query: 121 YKAKMWSLGEDDRHK 135
           YKAK W LG DD HK
Sbjct: 121 YKAKTWGLG-DDHHK 134


>gi|116812610 apolipoprotein O-like [Homo sapiens]
          Length = 268

 Score = 30.8 bits (68), Expect = 0.35
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 65  ARFLNLIHHAAQGPTKKYPEAQTENQEIGWDSEALVDPERRDHRMNHFRVYSDITLYKAK 124
           A+  +++ H+   PT+   EA+T+++     ++ + DP+  DH  +H     DI +Y  +
Sbjct: 211 AKTTHVLKHSVPLPTELSSEAKTKSESTSGATQFMPDPKLMDHGQSH---PEDIDMYSTR 267


>gi|153792230 hypothetical protein LOC57670 [Homo sapiens]
          Length = 1884

 Score = 29.6 bits (65), Expect = 0.78
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 69   NLIHHAAQGPTKKYPEAQTENQEIGWDSEALVDPERRD 106
            NL H   QGP   YP + TE+ + G  S +L+   R +
Sbjct: 1831 NLPHRGLQGPGLGYPTSSTEDLQPGHSSASLIKAIREE 1868


>gi|150378505 hypothetical protein LOC285343 isoform 1 [Homo
           sapiens]
          Length = 496

 Score = 28.5 bits (62), Expect = 1.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 19  ILRELYLKELRTQKLHTQYHVNPLRKVHRITRKPMSW 55
           IL    L     Q L+T  H  PL++  R+  +P+ W
Sbjct: 127 ILNSCSLSVEHIQSLNTNMHTQPLKEAKRMPDRPIKW 163


>gi|138175847 zinc finger protein 228 isoform 1 [Homo sapiens]
          Length = 913

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 38  HVNPLRKVHRITRKPMSWHDNLEEPADARFLNLIHHAAQGPTKKYPEAQTENQEIGWDSE 97
           H +PL     I    MS+  N+ E A +  L+L +   +  T+  P    EN+ + ++  
Sbjct: 342 HCSPLNTYELIHTGEMSYRHNIYEKAFSHSLDL-NSIFRVHTRDEPHEYEENENV-FNQS 399

Query: 98  ALVDPERRDHRMNHFRVYSDITLYKAKMWSLGEDDRHK 135
           + +   ++ H     ++Y+DI   K+ + S   D +H+
Sbjct: 400 SCLQVHQKIH--TEEKLYTDIEYGKSFICSSNLDIQHR 435


>gi|138175821 zinc finger protein 228 isoform 2 [Homo sapiens]
          Length = 907

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 38  HVNPLRKVHRITRKPMSWHDNLEEPADARFLNLIHHAAQGPTKKYPEAQTENQEIGWDSE 97
           H +PL     I    MS+  N+ E A +  L+L +   +  T+  P    EN+ + ++  
Sbjct: 336 HCSPLNTYELIHTGEMSYRHNIYEKAFSHSLDL-NSIFRVHTRDEPHEYEENENV-FNQS 393

Query: 98  ALVDPERRDHRMNHFRVYSDITLYKAKMWSLGEDDRHK 135
           + +   ++ H     ++Y+DI   K+ + S   D +H+
Sbjct: 394 SCLQVHQKIH--TEEKLYTDIEYGKSFICSSNLDIQHR 429


>gi|23199995 Williams Beuren syndrome chromosome region 22 protein
           [Homo sapiens]
          Length = 281

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 77  GPTKKYPEAQTENQEIGWDSEALVDPERRDHRMNHFRVYSDITLYKAKMWSLGEDDRHK 135
           GP+   PE  +ENQ+     E++   ER   RM+   +     + K++ W L + +RH+
Sbjct: 207 GPSTFIPEGLSENQDEVEPRESVFTNERFPLRMSRRGM-----VRKSRAWVLEKKERHR 260


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 6   KERVVTDEVHQNQILRELYLKELRTQKLHTQYHVNPLRKVHRITRKPMSWHDNLE 60
           K++ +  E  + Q  +E     L+  K   +YH +   K+ ++++   +WH N E
Sbjct: 434 KQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTE 488


>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 6   KERVVTDEVHQNQILRELYLKELRTQKLHTQYHVNPLRKVHRITRKPMSWHDNLE 60
           K++ +  E  + Q  +E     L+  K   +YH +   K+ ++++   +WH N E
Sbjct: 434 KQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTE 488


>gi|197276668 spermatogenesis and centriole associated 1 isoform 1
           [Homo sapiens]
          Length = 591

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 47  RITRKPMSWHDN----LEEPADARFLNLIHHAAQGPTKKYPEAQTENQEIGWD 95
           R +  P S +D+      EP+    + +    A   T K+PE   E++++ W+
Sbjct: 391 RTSSSPASVNDSRGPRTTEPSTKSMMEVERKLAHRKTSKFPENPRESKQLAWE 443


>gi|24308295 GrpE-like 1, mitochondrial [Homo sapiens]
          Length = 217

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 5   PKERVVTDEVHQNQILRELYLKELRTQKLHTQYHVNPLRKV 45
           PKE +  D  H   +   L + E++ QK+ T++ +  L  V
Sbjct: 126 PKEEIKDDNPHLKNLYEGLVMTEVQIQKVFTKHGLLKLNPV 166


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,729,296
Number of Sequences: 37866
Number of extensions: 238948
Number of successful extensions: 504
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 12
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.