Search of human proteins with 157388971

Search of human proteins with 157388971

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|157388971 hypothetical protein LOC55007 [Homo sapiens]
         (357 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|157388971 hypothetical protein LOC55007 [Homo sapiens]             720   0.0  
gi|157388973 hypothetical protein LOC55007 [Homo sapiens]             720   0.0  
gi|13375721 hypothetical protein LOC79607 [Homo sapiens]              306   2e-83
gi|198041777 Ran binding protein 11 isoform 1 [Homo sapiens]           35   0.10 
gi|39725950 Ran binding protein 11 isoform 2 [Homo sapiens]            35   0.10 
gi|10864011 sulfide dehydrogenase like [Homo sapiens]                  30   3.3  
gi|14249622 ajuba isoform 1 [Homo sapiens]                             29   5.7  
gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens]         29   5.7  
gi|19923971 coiled-coil domain containing 5 [Homo sapiens]             28   9.7  
gi|70906439 fibrinogen, gamma chain isoform gamma-B precursor [H...    28   9.7  
gi|70906437 fibrinogen, gamma chain isoform gamma-A precursor [H...    28   9.7  

>gi|157388971 hypothetical protein LOC55007 [Homo sapiens]
          Length = 357

 Score =  720 bits (1859), Expect = 0.0
 Identities = 357/357 (100%), Positives = 357/357 (100%)

Query: 1   MDSVEKTTNRSEQKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVI 60
           MDSVEKTTNRSEQKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVI
Sbjct: 1   MDSVEKTTNRSEQKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVI 60

Query: 61  EAAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDD 120
           EAAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDD
Sbjct: 61  EAAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDD 120

Query: 121 LEQHIRSPVVLQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWAR 180
           LEQHIRSPVVLQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWAR
Sbjct: 121 LEQHIRSPVVLQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWAR 180

Query: 181 GHMKYGVLHIHGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRD 240
           GHMKYGVLHIHGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRD
Sbjct: 181 GHMKYGVLHIHGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRD 240

Query: 241 QIFQALFLYSVPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQ 300
           QIFQALFLYSVPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQ
Sbjct: 241 QIFQALFLYSVPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQ 300

Query: 301 DLATQICKQQSPDADRVDSTTLLGNACQDCAKRKLEENGIEVSKKRTQSDTDDAGGS 357
           DLATQICKQQSPDADRVDSTTLLGNACQDCAKRKLEENGIEVSKKRTQSDTDDAGGS
Sbjct: 301 DLATQICKQQSPDADRVDSTTLLGNACQDCAKRKLEENGIEVSKKRTQSDTDDAGGS 357


>gi|157388973 hypothetical protein LOC55007 [Homo sapiens]
          Length = 357

 Score =  720 bits (1859), Expect = 0.0
 Identities = 357/357 (100%), Positives = 357/357 (100%)

Query: 1   MDSVEKTTNRSEQKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVI 60
           MDSVEKTTNRSEQKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVI
Sbjct: 1   MDSVEKTTNRSEQKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVI 60

Query: 61  EAAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDD 120
           EAAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDD
Sbjct: 61  EAAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDD 120

Query: 121 LEQHIRSPVVLQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWAR 180
           LEQHIRSPVVLQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWAR
Sbjct: 121 LEQHIRSPVVLQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWAR 180

Query: 181 GHMKYGVLHIHGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRD 240
           GHMKYGVLHIHGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRD
Sbjct: 181 GHMKYGVLHIHGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRD 240

Query: 241 QIFQALFLYSVPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQ 300
           QIFQALFLYSVPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQ
Sbjct: 241 QIFQALFLYSVPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQ 300

Query: 301 DLATQICKQQSPDADRVDSTTLLGNACQDCAKRKLEENGIEVSKKRTQSDTDDAGGS 357
           DLATQICKQQSPDADRVDSTTLLGNACQDCAKRKLEENGIEVSKKRTQSDTDDAGGS
Sbjct: 301 DLATQICKQQSPDADRVDSTTLLGNACQDCAKRKLEENGIEVSKKRTQSDTDDAGGS 357


>gi|13375721 hypothetical protein LOC79607 [Homo sapiens]
          Length = 351

 Score =  306 bits (783), Expect = 2e-83
 Identities = 155/296 (52%), Positives = 215/296 (72%), Gaps = 2/296 (0%)

Query: 13  QKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVIEAAEQLEVLHPG 72
           +K RK L SL  K+P+EL+LVIGTG+SAAVAP +PAL SW+  I+A+++AA   ++L   
Sbjct: 26  KKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPALKSWKGLIQALLDAAIDFDLLEDE 85

Query: 73  DVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDDLEQHIRSP--VV 130
           +  +F++ + +D++L+ VAHDLI+K+SPRT + + +FF+DCL EVFDDLE  +      +
Sbjct: 86  ESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESKMEDSGKQL 145

Query: 131 LQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWARGHMKYGVLHI 190
           LQS+L LM+ GA+VLTTN+DNLLE +   Q K +ESLDL D+ KVLEWA+   K  VLHI
Sbjct: 146 LQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVLHI 205

Query: 191 HGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYS 250
           HG+YT+P G+VL P+GY++V ++ EVM  +Q LY  KSFLF+GCG T+ D  FQALFL +
Sbjct: 206 HGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTTFQALFLEA 265

Query: 251 VPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQDLATQI 306
           V +K DLEH+MLV + + D F K + +ML  GIKV+SYGD +   P Y + L  +I
Sbjct: 266 VKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGDDYADLPEYFKRLTCEI 321


>gi|198041777 Ran binding protein 11 isoform 1 [Homo sapiens]
          Length = 1015

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 97  KMSPRTGDAKPSFFQDCLMEVFDDLEQHIRSPVVLQSILSLMDRGAMVLTTNYDNLLEAF 156
           K++P  G   P  FQ  L  VF  + +  R PVV+ + L +M R  +  T+ + +LL   
Sbjct: 797 KVNPILG---PQMFQPILPYVFKGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEM 853

Query: 157 GRRQNKPMESL 167
             + N+ M+ L
Sbjct: 854 AHKFNQEMDQL 864


>gi|39725950 Ran binding protein 11 isoform 2 [Homo sapiens]
          Length = 975

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 97  KMSPRTGDAKPSFFQDCLMEVFDDLEQHIRSPVVLQSILSLMDRGAMVLTTNYDNLLEAF 156
           K++P  G   P  FQ  L  VF  + +  R PVV+ + L +M R  +  T+ + +LL   
Sbjct: 757 KVNPILG---PQMFQPILPYVFKGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEM 813

Query: 157 GRRQNKPMESL 167
             + N+ M+ L
Sbjct: 814 AHKFNQEMDQL 824


>gi|10864011 sulfide dehydrogenase like [Homo sapiens]
          Length = 450

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 145 LTTNYD-NLLEAFGRRQNKPMESLDLKDKTKVLEWARGHMKYGVLHIHGLYTDPCGVVLD 203
           LT NY  NL+E    +Q    E+LD   +T+V+ +   H+   +     L T P   V D
Sbjct: 255 LTVNYKKNLIEVRADKQEAVFENLDKPGETQVISYEMLHVTPPMSPPDVLKTSP---VAD 311

Query: 204 PSGYKDVTQD 213
            +G+ DV ++
Sbjct: 312 AAGWVDVDKE 321


>gi|14249622 ajuba isoform 1 [Homo sapiens]
          Length = 538

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 208 KDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYSVPNKVDLE 258
           K +   +   + L +LY T+ F+   CG TLR + F     YSV   V  E
Sbjct: 343 KGIYGQSNACQALDSLYHTQCFVCCSCGRTLRCKAF-----YSVNGSVYCE 388


>gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens]
          Length = 1918

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 25/158 (15%)

Query: 5   EKTTNRSEQKSR---KFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVIE 61
           +K T + +Q  +   KFL+SL++K P E+++ + T +      G+  L S  S     +E
Sbjct: 132 QKPTEQPQQAKKLGYKFLESLLQKDPSEVVITLATSL------GLKELLSHSSMKSNFLE 185

Query: 62  AAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDL-IRKMSPRTGDAKPSFFQDCLMEVFDD 120
              Q+           R+  +   D   V H L I K S       P++    + E   D
Sbjct: 186 LICQV----------LRKACSSKMDRQSVLHVLGILKNSKFLKVCLPAYVVGMITEPIPD 235

Query: 121 LE----QHIRSPV-VLQSILSLMDRGAMVLTTNYDNLL 153
           +     +HI + + +LQ ++S+    ++  T+   +LL
Sbjct: 236 IRNQYPEHISNIISLLQDLVSVFPASSVQETSMLVSLL 273


>gi|19923971 coiled-coil domain containing 5 [Homo sapiens]
          Length = 278

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 79  RKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLME 116
           R   +DRD+ +V  DL +K S    +AK  + QD LME
Sbjct: 43  RNRVRDRDVYLVIEDLKQKASEYESEAK--YLQDLLME 78


>gi|70906439 fibrinogen, gamma chain isoform gamma-B precursor [Homo
           sapiens]
          Length = 453

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 250 SVPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQDLATQICKQ 309
           S PN +D     L  ++  +   K++A +L H   +    + ++     + +L  ++ + 
Sbjct: 100 SKPNMIDAA--TLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 157

Query: 310 ----QSPDADRVDSTTLLGNACQDCAKRKLEENGI 340
               Q P  D V    + G  CQD A +  +++G+
Sbjct: 158 EAQCQEPCKDTVQIHDITGKDCQDIANKGAKQSGL 192


>gi|70906437 fibrinogen, gamma chain isoform gamma-A precursor [Homo
           sapiens]
          Length = 437

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 250 SVPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQDLATQICKQ 309
           S PN +D     L  ++  +   K++A +L H   +    + ++     + +L  ++ + 
Sbjct: 100 SKPNMIDAA--TLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 157

Query: 310 ----QSPDADRVDSTTLLGNACQDCAKRKLEENGI 340
               Q P  D V    + G  CQD A +  +++G+
Sbjct: 158 EAQCQEPCKDTVQIHDITGKDCQDIANKGAKQSGL 192


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,581,552
Number of Sequences: 37866
Number of extensions: 588928
Number of successful extensions: 1318
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1311
Number of HSP's gapped (non-prelim): 11
length of query: 357
length of database: 18,247,518
effective HSP length: 103
effective length of query: 254
effective length of database: 14,347,320
effective search space: 3644219280
effective search space used: 3644219280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.